Wall clock time and date at job start Tue Mar 31 2020 20:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 C 1.35842 * 126.13329 * 269.99738 * 3 2 1 5 5 N 1.30175 * 109.00116 * 179.76526 * 4 3 2 6 6 C 1.35762 * 108.86665 * 0.37790 * 5 4 3 7 7 C 1.47325 * 126.23422 * 179.88316 * 6 5 4 8 8 O 1.21624 * 120.00111 * 179.69407 * 7 6 5 9 9 N 1.34777 * 119.99836 * 359.69262 * 7 6 5 10 10 C 1.46507 * 119.99542 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46822 * 35.00535 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00190 * 10 9 7 13 13 C 1.53002 * 109.46688 * 155.00029 * 10 9 7 14 14 H 1.09002 * 109.47070 * 60.00104 * 13 10 9 15 15 C 1.53000 * 109.47233 * 299.99730 * 13 10 9 16 16 N 1.46901 * 109.46860 * 180.02562 * 13 10 9 17 17 C 1.46903 * 110.99880 * 205.00557 * 16 13 10 18 18 C 1.50697 * 109.46959 * 180.02562 * 17 16 13 19 19 O 1.21293 * 120.00499 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00053 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99662 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00341 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00073 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47235 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46986 * 120.00408 * 25 23 21 28 28 H 1.48502 * 109.47266 * 239.99901 * 25 23 21 29 29 C 1.35374 * 126.13581 * 89.99965 * 3 2 1 30 30 H 1.09007 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47582 * 300.00217 * 1 2 3 32 32 H 1.09001 * 109.47007 * 60.00097 * 1 2 3 33 33 H 1.08996 * 109.47162 * 239.99478 * 2 1 3 34 34 H 1.09000 * 109.46843 * 119.99375 * 2 1 3 35 35 H 1.08000 * 125.50130 * 0.02562 * 4 3 2 36 36 H 0.96997 * 120.00436 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47140 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 39 39 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 40 40 H 1.09001 * 109.47194 * 179.97438 * 15 13 10 41 41 H 1.08992 * 109.47399 * 300.00166 * 15 13 10 42 42 H 1.09004 * 109.46724 * 60.00652 * 15 13 10 43 43 H 1.00904 * 110.99967 * 328.95217 * 16 13 10 44 44 H 1.09003 * 109.46525 * 299.99167 * 17 16 13 45 45 H 1.08991 * 109.47692 * 59.99249 * 17 16 13 46 46 H 0.97000 * 119.99778 * 359.97438 * 20 18 17 47 47 H 0.97003 * 119.99792 * 179.97438 * 24 23 21 48 48 H 1.08001 * 126.56649 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2853 2.1365 -1.0971 5 7 2.6951 3.3110 -0.7137 6 6 2.7136 3.3481 0.6433 7 6 3.1175 4.4931 1.4777 8 8 3.0850 4.4034 2.6902 9 7 3.5231 5.6399 0.8975 10 6 3.9243 6.7787 1.7273 11 1 4.4202 6.4154 2.6274 12 6 2.6851 7.5864 2.1184 13 6 4.8864 7.6700 0.9393 14 1 4.3905 8.0332 0.0392 15 6 6.1256 6.8622 0.5484 16 7 5.2891 8.8115 1.7716 17 6 5.6930 9.9530 0.9397 18 6 6.0990 11.1019 1.8264 19 8 6.0557 10.9820 3.0326 20 7 6.5102 12.2629 1.2790 21 6 6.8791 13.3083 2.0855 22 1 6.8397 13.2017 3.1595 23 6 7.3035 14.5051 1.5212 24 7 7.3508 14.6349 0.2144 25 14 7.8054 15.9297 2.6202 26 1 7.6624 15.5312 4.0436 27 1 9.2197 16.2908 2.3475 28 1 6.9337 17.0996 2.3432 29 6 2.2843 2.1339 1.0933 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.1716 1.8157 -2.1221 36 1 3.5494 5.7114 -0.0695 37 1 2.9837 8.4339 2.7354 38 1 2.1892 7.9496 1.2182 39 1 1.9997 6.9514 2.6796 40 1 6.8108 7.4971 -0.0134 41 1 6.6214 6.4991 1.4485 42 1 5.8270 6.0150 -0.0691 43 1 4.5519 9.0719 2.4095 44 1 6.5354 9.6643 0.3112 45 1 4.8572 10.2573 0.3099 46 1 6.5451 12.3587 0.3143 47 1 7.6468 15.4705 -0.1796 48 1 2.1769 1.8313 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329171718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:25 Heat of formation + Delta-G solvation = -40.471801 kcal Electronic energy + Delta-G solvation = -28236.819920 eV Core-core repulsion = 24133.592470 eV Total energy + Delta-G solvation = -4103.227450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.14616 -40.79112 -40.11067 -38.41449 -36.03770 -35.92646 -35.26085 -33.26850 -32.08293 -31.24183 -30.91496 -30.27080 -28.02907 -25.91625 -25.57505 -24.42430 -23.48816 -21.84273 -21.47592 -21.08373 -21.02111 -19.91710 -18.95605 -17.87861 -17.47744 -17.23759 -16.78686 -16.55301 -16.40898 -15.97846 -15.79093 -15.48028 -15.43955 -15.04261 -14.93910 -14.74267 -14.62804 -14.53018 -14.15978 -14.10936 -13.57601 -13.50764 -13.43531 -13.13113 -12.96868 -12.89711 -12.67974 -12.60176 -12.39378 -12.33048 -12.20893 -12.10731 -11.62977 -11.50389 -11.37040 -11.06635 -10.74325 -10.33324 -10.17984 -10.00255 -9.60044 -9.35766 -8.45795 -5.94310 0.57467 1.37327 1.42608 1.46489 1.56936 1.69494 2.05980 2.17882 2.32189 2.54716 2.98846 3.21548 3.42716 3.51563 3.59177 3.79190 3.91478 3.96080 4.11368 4.16267 4.18675 4.31925 4.41562 4.43101 4.45600 4.47062 4.57731 4.60384 4.70942 4.72868 4.85231 4.85572 4.95511 4.99716 5.13593 5.18216 5.24256 5.37197 5.42327 5.44514 5.45317 5.90163 6.10722 6.13081 6.37783 6.50265 6.61379 6.88235 7.13863 7.25138 7.57232 8.12872 8.71818 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.001627 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.323019 B =17202.083663 C =17499.089189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.196 3.804 5 N -0.495 5.495 6 C -0.098 4.098 7 C 0.600 3.400 8 O -0.583 6.583 9 N -0.696 5.696 10 C 0.149 3.851 11 H 0.074 0.926 12 C -0.163 4.163 13 C 0.085 3.915 14 H 0.068 0.932 15 C -0.135 4.135 16 N -0.676 5.676 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.039 3.961 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.346 0.654 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 -32.279 -9.681 36.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.088 4.088 5 N -0.214 5.214 6 C -0.226 4.226 7 C 0.388 3.612 8 O -0.464 6.464 9 N -0.347 5.347 10 C 0.044 3.956 11 H 0.092 0.908 12 C -0.222 4.222 13 C -0.025 4.025 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.312 5.312 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.102 4.102 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.265 0.735 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.168 0.832 44 H 0.123 0.877 45 H 0.089 0.911 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.526 -31.940 -8.584 35.732 hybrid contribution -0.674 0.793 -0.002 1.041 sum -14.200 -31.147 -8.587 35.291 Atomic orbital electron populations 1.22167 0.93546 1.04410 1.02497 1.22336 0.95939 0.77201 1.07218 1.45797 1.47177 1.14296 1.05711 1.25942 1.01269 0.86420 0.95185 1.70539 1.19690 1.21412 1.09733 1.20408 1.15117 0.95805 0.91245 1.17255 0.75876 0.81863 0.86179 1.90776 1.56801 1.83754 1.15052 1.45629 1.66145 1.11975 1.10956 1.20867 0.94575 0.85994 0.94202 0.90821 1.22188 0.97722 1.00037 1.02243 1.21726 0.95269 0.90655 0.94825 0.91422 1.21775 0.96929 0.99457 1.01165 1.60176 1.45943 1.05859 1.19261 1.21586 1.01960 0.88919 0.94138 1.20861 0.82729 0.84686 0.89200 1.90499 1.60076 1.83384 1.17028 1.41914 1.58343 1.11212 1.09467 1.19711 1.42703 0.92204 0.91763 0.90402 1.26022 0.96805 1.00755 0.97581 1.69679 1.47591 1.28253 1.10519 0.84875 0.78213 0.77370 0.77889 1.19913 1.19609 1.19519 1.22748 1.01580 0.91466 0.94423 0.88366 0.93329 0.91951 0.85519 0.87509 0.73472 0.74860 0.91499 0.91105 0.92615 0.92161 0.93507 0.90984 0.83172 0.87688 0.91143 0.76912 0.91304 0.78882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.16 10.24 71.98 0.74 0.58 16 2 C 0.09 0.04 6.84 86.38 0.59 0.64 16 3 N -0.45 -4.08 2.72 -528.40 -1.44 -5.52 16 4 C 0.20 2.08 12.55 180.10 2.26 4.34 16 5 N -0.49 -9.37 11.01 -188.82 -2.08 -11.45 16 6 C -0.10 -2.16 6.98 40.50 0.28 -1.88 16 7 C 0.60 16.41 7.78 86.63 0.67 17.08 16 8 O -0.58 -19.72 16.54 -4.11 -0.07 -19.79 16 9 N -0.70 -16.65 4.38 -445.87 -1.95 -18.60 16 10 C 0.15 3.92 2.29 44.99 0.10 4.02 16 11 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 12 C -0.16 -4.17 9.25 71.98 0.67 -3.50 16 13 C 0.09 2.18 2.28 44.92 0.10 2.29 16 14 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 15 C -0.14 -3.33 9.26 71.98 0.67 -2.66 16 16 N -0.68 -22.59 5.93 -495.57 -2.94 -25.53 16 17 C 0.07 2.33 5.96 85.56 0.51 2.84 16 18 C 0.44 21.38 7.82 87.66 0.69 22.07 16 19 O -0.62 -35.64 15.78 -3.07 -0.05 -35.69 16 20 N -0.57 -29.89 5.29 -306.98 -1.62 -31.52 16 21 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 25 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 C 0.04 0.63 11.26 83.72 0.94 1.58 16 30 H 0.10 -0.25 8.14 -2.38 -0.02 -0.26 16 31 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 33 H 0.13 -0.58 8.14 -2.39 -0.02 -0.59 16 34 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.25 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.41 8.58 8.10 -92.71 -0.75 7.83 16 37 H 0.07 1.79 6.21 -2.39 -0.01 1.78 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.51 7.45 -2.39 -0.02 1.49 16 43 H 0.35 12.18 5.87 -89.69 -0.53 11.65 16 44 H 0.11 3.35 7.44 -2.39 -0.02 3.33 16 45 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 46 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -80.00 403.82 0.65 -79.34 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -1.01 Total: 44.17 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 9.50 Total: 28.67 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -9.75 Total: -142.40 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.12 Total: -55.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -80.00 0.65 -79.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329171718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.872 kcal (2) G-P(sol) polarization free energy of solvation -79.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds