Wall clock time and date at job start Tue Mar 31 2020 19:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47217 * 2 1 4 4 C 1.52997 * 109.47463 * 240.00127 * 2 1 3 5 5 C 1.53000 * 109.47477 * 63.39475 * 4 2 1 6 6 N 1.46493 * 109.47493 * 174.18724 * 5 4 2 7 7 C 1.34774 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21359 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.49339 * 120.00303 * 180.02562 * 7 6 5 10 10 O 1.21389 * 119.99762 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00303 * 179.97438 * 9 7 6 12 12 C 1.39932 * 120.00005 * 180.02562 * 11 9 7 13 13 C 1.40456 * 125.98194 * 359.71422 * 12 11 9 14 14 C 1.35215 * 107.86633 * 179.86611 * 13 12 11 15 15 N 1.34986 * 107.88011 * 0.39438 * 14 13 12 16 16 C 1.46497 * 125.97735 * 179.73167 * 15 14 13 17 17 C 1.50698 * 109.47285 * 124.99558 * 16 15 14 18 18 H 1.07992 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99579 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99510 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00375 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47033 * 89.99283 * 21 19 17 23 23 H 1.48498 * 109.47485 * 209.99641 * 21 19 17 24 24 H 1.48502 * 109.47041 * 329.99609 * 21 19 17 25 25 N 1.31279 * 125.97598 * 180.02562 * 12 11 9 26 26 N 1.46901 * 109.47554 * 119.99641 * 2 1 3 27 27 C 1.46902 * 111.00097 * 303.11166 * 26 2 1 28 28 C 1.46897 * 111.00390 * 179.15555 * 26 2 1 29 29 H 1.08998 * 109.46704 * 300.00169 * 1 2 3 30 30 H 1.08998 * 109.47238 * 60.00448 * 1 2 3 31 31 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47460 * 183.39570 * 4 2 1 33 33 H 1.09000 * 109.46554 * 303.39801 * 4 2 1 34 34 H 1.09000 * 109.47075 * 294.19299 * 5 4 2 35 35 H 1.09006 * 109.46702 * 54.18730 * 5 4 2 36 36 H 0.97002 * 120.00147 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00357 * 359.97438 * 11 9 7 38 38 H 1.08004 * 126.06924 * 0.02562 * 13 12 11 39 39 H 1.08006 * 126.06050 * 180.11159 * 14 13 12 40 40 H 1.08998 * 109.46869 * 245.00296 * 16 15 14 41 41 H 1.09002 * 109.46652 * 4.99717 * 16 15 14 42 42 H 0.97002 * 120.00248 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.47506 * 59.99215 * 27 26 2 44 44 H 1.09004 * 109.46838 * 299.99566 * 27 26 2 45 45 H 1.08998 * 109.47498 * 179.97438 * 27 26 2 46 46 H 1.09002 * 109.47189 * 176.64888 * 28 26 2 47 47 H 1.09000 * 109.46850 * 296.64687 * 28 26 2 48 48 H 1.08997 * 109.47400 * 56.64513 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6011 0.0476 -2.4970 6 7 2.2042 -0.5630 -3.6843 7 6 1.9569 -0.0494 -4.9055 8 8 1.2343 0.9186 -5.0218 9 6 2.5712 -0.6723 -6.1159 10 8 3.2937 -1.6408 -5.9996 11 7 2.3235 -0.1590 -7.3372 12 6 2.8988 -0.7430 -8.4713 13 6 3.7534 -1.8576 -8.4822 14 6 4.0886 -2.1108 -9.7674 15 7 3.4798 -1.1895 -10.5437 16 6 3.5774 -1.0931 -12.0023 17 6 2.1944 -1.1128 -12.6007 18 1 1.3293 -1.1890 -11.9588 19 6 2.0336 -1.0324 -13.9677 20 7 0.8268 -1.0501 -14.4899 21 14 3.5299 -0.8999 -15.0780 22 1 3.9842 -2.2608 -15.4609 23 1 3.1736 -0.1349 -16.2998 24 1 4.6216 -0.1986 -14.3557 25 7 2.7386 -0.3414 -9.7109 26 7 2.0198 -0.6924 1.1995 27 6 1.4890 -0.0706 2.4200 28 6 3.4881 -0.7295 1.2233 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1284 -0.7742 -1.2193 33 1 1.6278 -1.7298 -1.2801 34 1 0.5150 0.0123 -2.5822 35 1 1.9257 1.0852 -2.4174 36 1 2.7815 -1.3370 -3.5914 37 1 1.7459 0.6147 -7.4302 38 1 4.0822 -2.4152 -7.6176 39 1 4.7333 -2.9061 -10.1114 40 1 4.0770 -0.1628 -12.2722 41 1 4.1507 -1.9377 -12.3846 42 1 0.7136 -0.9939 -15.4517 43 1 0.4001 -0.1190 2.4085 44 1 1.8058 0.9715 2.4641 45 1 1.8669 -0.6028 3.2929 46 1 3.8248 -1.1946 2.1499 47 1 3.8507 -1.3081 0.3737 48 1 3.8783 0.2865 1.1640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330333282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:40 Heat of formation + Delta-G solvation = 27.779759 kcal Electronic energy + Delta-G solvation = -27863.958275 eV Core-core repulsion = 23763.690434 eV Total energy + Delta-G solvation = -4100.267841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13926 -40.29565 -39.08464 -38.43055 -35.93409 -34.87468 -33.32061 -32.73770 -31.34836 -29.73340 -29.52286 -27.94358 -27.31457 -25.65199 -24.78429 -23.07520 -22.41334 -21.38398 -20.69309 -20.17332 -19.69597 -18.35552 -17.25664 -16.97863 -16.54431 -16.44180 -16.37206 -15.74584 -15.44169 -15.22787 -15.14292 -15.05138 -14.55350 -14.18779 -14.09214 -13.73561 -13.41469 -13.22088 -13.02430 -12.82005 -12.59199 -12.43032 -12.35518 -12.30869 -12.23643 -12.17173 -11.73614 -11.66648 -11.40750 -11.19550 -11.10951 -10.78441 -10.73055 -10.12305 -10.05724 -9.64237 -9.56909 -9.55806 -8.86857 -8.78409 -8.31064 -7.66079 -6.24963 -4.27892 1.16499 1.99578 2.57549 2.97223 3.05694 3.14839 3.21100 3.24217 3.39035 3.60381 3.76401 4.21345 4.29545 4.31673 4.37377 4.52126 4.69203 4.83824 4.87064 4.89949 5.02091 5.03446 5.10926 5.12760 5.29165 5.31520 5.35120 5.42860 5.45609 5.52164 5.59812 5.66536 5.80422 5.88368 6.00645 6.22499 6.31755 6.38198 6.49986 6.52772 6.60341 6.84061 7.16302 7.18623 7.34762 7.59973 7.72730 7.90217 8.29667 8.44783 8.84501 9.29379 10.87666 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.001596 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.720926 B =17541.564179 C =18035.785732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.085 3.915 3 H 0.045 0.955 4 C -0.129 4.129 5 C 0.118 3.882 6 N -0.700 5.700 7 C 0.516 3.484 8 O -0.514 6.514 9 C 0.513 3.487 10 O -0.500 6.500 11 N -0.598 5.598 12 C 0.254 3.746 13 C -0.282 4.282 14 C 0.053 3.947 15 N -0.314 5.314 16 C 0.231 3.769 17 C -0.537 4.537 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.886 5.886 21 Si 0.873 3.127 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.287 5.287 26 N -0.543 5.543 27 C 0.021 3.979 28 C 0.018 3.982 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.424 0.576 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.269 0.731 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 0.567 31.406 31.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.354 5.354 7 C 0.296 3.704 8 O -0.389 6.389 9 C 0.293 3.707 10 O -0.373 6.373 11 N -0.247 5.247 12 C 0.000 4.000 13 C -0.313 4.313 14 C -0.096 4.096 15 N -0.096 5.096 16 C 0.112 3.888 17 C -0.575 4.575 18 H 0.104 0.896 19 C -0.127 4.127 20 N -0.523 5.523 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.189 1.189 25 N -0.118 5.118 26 N -0.267 5.267 27 C -0.128 4.128 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.262 0.738 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.223 0.973 30.332 30.640 hybrid contribution 1.289 0.338 -0.228 1.352 sum 5.511 1.311 30.104 30.632 Atomic orbital electron populations 1.22014 0.93822 1.03067 1.02239 1.21557 0.96082 0.95397 0.89389 0.93702 1.21892 1.01978 1.00610 0.92221 1.21520 0.98916 0.97371 0.82768 1.45672 1.50486 1.34039 1.05221 1.19859 0.81932 0.84158 0.84449 1.90802 1.36111 1.25744 1.86241 1.19919 0.82440 0.84436 0.83882 1.90706 1.35655 1.25257 1.85705 1.42000 1.47485 1.32359 1.02812 1.19022 0.98438 0.95946 0.86555 1.21536 1.09113 1.03050 0.97619 1.22578 0.99957 0.96155 0.90910 1.48699 1.32938 1.20278 1.07706 1.20095 1.00110 0.98361 0.70212 1.21101 0.91001 1.52627 0.92801 0.89589 1.24829 0.96057 0.94207 0.97595 1.69871 1.21224 1.48833 1.12380 0.86904 0.83205 0.78926 0.81048 1.19691 1.20491 1.18870 1.77478 1.18534 1.17812 0.97937 1.62008 1.08838 1.53785 1.02086 1.22450 1.01239 0.96941 0.92125 1.22468 0.87223 1.00241 1.03031 0.92291 0.91511 0.91400 0.90646 0.89804 0.90343 0.90911 0.74906 0.73815 0.81960 0.81121 0.93868 0.93171 0.92133 0.90801 0.95647 0.91346 0.91331 0.90817 0.95539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.59 37.16 0.32 -0.47 16 2 C 0.08 0.46 2.16 -67.71 -0.15 0.32 16 3 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 4 C -0.13 -0.68 4.65 -26.73 -0.12 -0.81 16 5 C 0.12 0.82 5.24 -4.05 -0.02 0.80 16 6 N -0.70 -6.12 5.55 -60.77 -0.34 -6.46 16 7 C 0.52 6.27 7.89 -11.64 -0.09 6.17 16 8 O -0.51 -7.32 16.48 5.49 0.09 -7.23 16 9 C 0.51 7.35 7.85 -11.64 -0.09 7.25 16 10 O -0.50 -7.63 13.60 5.46 0.07 -7.56 16 11 N -0.60 -9.69 5.43 -11.58 -0.06 -9.75 16 12 C 0.25 4.99 8.10 -154.55 -1.25 3.74 16 13 C -0.28 -5.21 9.60 -39.82 -0.38 -5.59 16 14 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 15 N -0.31 -6.97 3.67 -62.56 -0.23 -7.20 16 16 C 0.23 5.38 5.33 -5.20 -0.03 5.35 16 17 C -0.54 -15.06 9.79 -34.44 -0.34 -15.39 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 21 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 25 N -0.29 -6.53 12.43 31.41 0.39 -6.14 16 26 N -0.54 -3.18 4.89 -243.17 -1.19 -4.37 16 27 C 0.02 0.10 9.13 60.07 0.55 0.65 16 28 C 0.02 0.09 9.11 60.06 0.55 0.64 16 29 H 0.06 0.28 6.36 -51.93 -0.33 -0.05 16 30 H 0.07 0.34 6.65 -51.93 -0.35 -0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 6.28 -51.93 -0.33 0.04 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.57 6.82 -51.93 -0.35 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.41 3.08 7.94 -40.82 -0.32 2.76 16 37 H 0.42 6.36 8.29 -40.82 -0.34 6.02 16 38 H 0.16 2.79 5.91 -52.48 -0.31 2.48 16 39 H 0.17 2.43 8.06 -52.48 -0.42 2.00 16 40 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 41 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.33 6.25 -51.93 -0.32 0.00 16 44 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 46 H 0.07 0.30 8.06 -51.93 -0.42 -0.12 16 47 H 0.07 0.34 6.40 -51.93 -0.33 0.01 16 48 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -33.63 393.58 -7.72 -41.35 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.14 Total: 6.35 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.35 Total: 5.50 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.65 Total: -59.61 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.63 -7.72 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330333282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.132 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds