Wall clock time and date at job start Tue Mar 31 2020 19:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47885 * 2 1 4 4 C 1.53001 * 109.47110 * 120.00345 * 2 1 3 5 5 C 1.53005 * 109.46854 * 294.71069 * 4 2 1 6 6 N 1.46499 * 109.47011 * 185.22167 * 5 4 2 7 7 C 1.34773 * 119.99608 * 179.97438 * 6 5 4 8 8 O 1.21367 * 120.00586 * 0.02562 * 7 6 5 9 9 C 1.49344 * 119.99734 * 180.02562 * 7 6 5 10 10 O 1.21388 * 119.99996 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00070 * 180.02562 * 9 7 6 12 12 C 1.39928 * 119.99938 * 179.97438 * 11 9 7 13 13 C 1.40461 * 125.98183 * 0.02562 * 12 11 9 14 14 C 1.35217 * 107.86623 * 179.70976 * 13 12 11 15 15 N 1.34990 * 107.87772 * 0.43000 * 14 13 12 16 16 C 1.46495 * 125.97367 * 179.83448 * 15 14 13 17 17 C 1.50698 * 109.47151 * 124.71255 * 16 15 14 18 18 H 1.07996 * 120.00085 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99974 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00113 * 179.72230 * 19 17 16 21 21 Si 1.86796 * 120.00105 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47249 * 269.72285 * 21 19 17 23 23 H 1.48500 * 109.47041 * 29.72380 * 21 19 17 24 24 H 1.48502 * 109.47607 * 149.72346 * 21 19 17 25 25 N 1.31270 * 125.97864 * 179.97438 * 12 11 9 26 26 N 1.46904 * 109.47152 * 239.99871 * 2 1 3 27 27 C 1.46896 * 110.99980 * 58.17918 * 26 2 1 28 28 C 1.46897 * 111.00333 * 182.14023 * 26 2 1 29 29 H 1.09001 * 109.47214 * 59.99613 * 1 2 3 30 30 H 1.08999 * 109.47885 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47355 * 300.00222 * 1 2 3 32 32 H 1.08998 * 109.47647 * 174.71324 * 4 2 1 33 33 H 1.08999 * 109.47094 * 54.70483 * 4 2 1 34 34 H 1.09002 * 109.46711 * 65.22746 * 5 4 2 35 35 H 1.08993 * 109.47260 * 305.22658 * 5 4 2 36 36 H 0.96998 * 120.00209 * 0.02562 * 6 5 4 37 37 H 0.97003 * 119.99565 * 359.97438 * 11 9 7 38 38 H 1.07998 * 126.06421 * 359.97438 * 13 12 11 39 39 H 1.07999 * 126.06247 * 180.25749 * 14 13 12 40 40 H 1.08999 * 109.47158 * 4.71569 * 16 15 14 41 41 H 1.09003 * 109.46959 * 244.71290 * 16 15 14 42 42 H 0.97000 * 120.00328 * 180.27492 * 20 19 17 43 43 H 1.09005 * 109.46936 * 60.00130 * 27 26 2 44 44 H 1.09001 * 109.47119 * 180.02562 * 27 26 2 45 45 H 1.08997 * 109.47821 * 300.00389 * 27 26 2 46 46 H 1.08995 * 109.47397 * 66.30851 * 28 26 2 47 47 H 1.08997 * 109.47306 * 186.32079 * 28 26 2 48 48 H 1.09008 * 109.46932 * 306.31853 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0726 2.4950 6 7 2.2348 -0.5496 3.6811 7 6 2.0185 -0.0178 4.9004 8 8 1.3318 0.9762 5.0160 9 6 2.6239 -0.6517 6.1096 10 8 3.3111 -1.6456 5.9941 11 7 2.4072 -0.1203 7.3291 12 6 2.9740 -0.7145 8.4620 13 6 3.7855 -1.8609 8.4740 14 6 4.1349 -2.1086 9.7565 15 7 3.5612 -1.1642 10.5320 16 6 3.6771 -1.0599 11.9886 17 6 4.1904 0.3088 12.3550 18 1 4.4081 1.0291 11.5803 19 6 4.3811 0.6419 13.6792 20 7 4.8343 1.8345 13.9987 21 14 4.0040 -0.6036 15.0193 22 1 2.5904 -0.4553 15.4493 23 1 4.2204 -1.9759 14.4946 24 1 4.9013 -0.3700 16.1792 25 7 2.8411 -0.2977 9.6997 26 7 2.0196 -0.6925 -1.1994 27 6 1.5134 -0.0521 -2.4207 28 6 3.4872 -0.7567 -1.2081 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.1258 -0.8041 1.2032 33 1 1.6013 -1.7180 1.2978 34 1 0.5556 0.0763 2.5914 35 1 2.0015 1.0972 2.4034 36 1 2.7839 -1.3438 3.5888 37 1 1.8583 0.6742 7.4213 38 1 4.0817 -2.4392 7.6113 39 1 4.7595 -2.9199 10.1000 40 1 4.3708 -1.8175 12.3531 41 1 2.6985 -1.2145 12.4430 42 1 4.9722 2.0675 14.9301 43 1 1.8497 0.9843 -2.4536 44 1 1.8907 -0.5849 -3.2935 45 1 0.4238 -0.0805 -2.4211 46 1 3.8280 -1.3912 -0.3900 47 1 3.8271 -1.1726 -2.1566 48 1 3.8954 0.2464 -1.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330333283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:42 Heat of formation + Delta-G solvation = 27.558353 kcal Electronic energy + Delta-G solvation = -27866.292464 eV Core-core repulsion = 23766.015022 eV Total energy + Delta-G solvation = -4100.277442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13909 -40.29531 -39.08269 -38.42996 -35.93108 -34.87337 -33.32157 -32.73490 -31.34876 -29.74151 -29.52312 -27.94635 -27.31801 -25.64158 -24.77605 -23.07583 -22.41434 -21.38721 -20.69986 -20.17384 -19.69782 -18.35723 -17.25684 -16.97756 -16.53613 -16.43962 -16.37637 -15.74751 -15.42388 -15.22359 -15.14650 -15.04566 -14.56373 -14.21006 -14.08056 -13.72666 -13.41545 -13.21548 -13.01887 -12.82374 -12.61165 -12.45527 -12.36402 -12.29442 -12.21524 -12.15487 -11.74248 -11.66706 -11.40910 -11.20180 -11.10389 -10.90097 -10.59819 -10.17314 -10.03230 -9.64289 -9.57109 -9.55851 -8.86443 -8.78641 -8.31083 -7.66600 -6.25118 -4.28111 1.16388 1.99499 2.57449 2.97104 3.06046 3.15441 3.19703 3.24172 3.39152 3.60323 3.76386 4.21085 4.29474 4.32052 4.37102 4.52446 4.69074 4.83803 4.87365 4.90378 5.02151 5.03122 5.11195 5.13999 5.28865 5.31505 5.35090 5.43108 5.45387 5.52185 5.60328 5.66457 5.80036 5.88111 6.00766 6.23066 6.31924 6.38846 6.50138 6.52961 6.58200 6.84030 7.16348 7.18792 7.34523 7.59860 7.72725 7.90147 8.29527 8.44778 8.84230 9.29209 10.87477 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.001589 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.955825 B =17614.420530 C =17875.843680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.084 3.916 3 H 0.045 0.955 4 C -0.129 4.129 5 C 0.118 3.882 6 N -0.700 5.700 7 C 0.516 3.484 8 O -0.514 6.514 9 C 0.513 3.487 10 O -0.500 6.500 11 N -0.598 5.598 12 C 0.254 3.746 13 C -0.282 4.282 14 C 0.054 3.946 15 N -0.315 5.315 16 C 0.231 3.769 17 C -0.537 4.537 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.886 5.886 21 Si 0.875 3.125 22 H -0.271 1.271 23 H -0.265 1.265 24 H -0.280 1.280 25 N -0.287 5.287 26 N -0.543 5.543 27 C 0.021 3.979 28 C 0.018 3.982 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.424 0.576 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.269 0.731 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -7.362 -30.071 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.354 5.354 7 C 0.296 3.704 8 O -0.389 6.389 9 C 0.293 3.707 10 O -0.373 6.373 11 N -0.247 5.247 12 C 0.000 4.000 13 C -0.313 4.313 14 C -0.095 4.095 15 N -0.096 5.096 16 C 0.112 3.888 17 C -0.575 4.575 18 H 0.104 0.896 19 C -0.127 4.127 20 N -0.523 5.523 21 Si 0.701 3.299 22 H -0.197 1.197 23 H -0.190 1.190 24 H -0.206 1.206 25 N -0.118 5.118 26 N -0.267 5.267 27 C -0.127 4.127 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.262 0.738 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.470 -6.813 -29.024 30.507 hybrid contribution 0.604 -0.151 0.320 0.700 sum -5.866 -6.965 -28.704 30.114 Atomic orbital electron populations 1.21999 0.93834 1.03007 1.02198 1.21563 0.96081 0.95440 0.89360 0.93659 1.21902 1.02219 1.00374 0.92252 1.21518 0.99066 0.97165 0.82822 1.45670 1.52408 1.31939 1.05395 1.19863 0.81637 0.84458 0.84443 1.90804 1.37466 1.24471 1.86160 1.19922 0.82150 0.84743 0.83861 1.90706 1.36807 1.24214 1.85589 1.42003 1.49330 1.30343 1.02987 1.19020 0.99093 0.95137 0.86700 1.21538 1.09800 1.02308 0.97676 1.22575 0.99952 0.95975 0.91033 1.48703 1.34959 1.18062 1.07919 1.20102 0.98105 1.00348 0.70227 1.21104 1.45211 0.96975 0.94247 0.89596 1.24830 0.94324 0.95364 0.98176 1.69871 1.44248 1.19627 1.18578 0.86887 0.79099 0.81792 0.82137 1.19679 1.18960 1.20560 1.77473 1.20080 1.16065 0.98176 1.62011 1.09545 1.53124 1.02050 1.22449 1.01337 0.96840 0.92124 1.22469 0.87158 1.00388 1.02951 0.92312 0.91442 0.91562 0.90572 0.89853 0.90393 0.90882 0.74901 0.73815 0.81959 0.81127 0.92734 0.94297 0.92132 0.95630 0.91337 0.90847 0.90818 0.91365 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.66 37.16 0.32 -0.45 16 2 C 0.08 0.46 2.13 -67.71 -0.14 0.32 16 3 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 4 C -0.13 -0.68 4.65 -26.73 -0.12 -0.81 16 5 C 0.12 0.82 5.30 -4.04 -0.02 0.80 16 6 N -0.70 -6.12 5.55 -60.76 -0.34 -6.46 16 7 C 0.52 6.27 7.89 -11.64 -0.09 6.17 16 8 O -0.51 -7.32 16.48 5.48 0.09 -7.23 16 9 C 0.51 7.34 7.85 -11.63 -0.09 7.25 16 10 O -0.50 -7.63 13.60 5.46 0.07 -7.55 16 11 N -0.60 -9.69 5.43 -11.58 -0.06 -9.75 16 12 C 0.25 4.99 8.10 -154.56 -1.25 3.74 16 13 C -0.28 -5.21 9.60 -39.82 -0.38 -5.59 16 14 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 15 N -0.31 -6.97 3.67 -62.56 -0.23 -7.20 16 16 C 0.23 5.38 5.33 -5.20 -0.03 5.35 16 17 C -0.54 -15.06 9.79 -34.44 -0.34 -15.39 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 21 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.26 -5.58 6.54 56.52 0.37 -5.22 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.29 -6.54 12.42 31.41 0.39 -6.15 16 26 N -0.54 -3.19 4.89 -243.18 -1.19 -4.38 16 27 C 0.02 0.10 9.15 60.06 0.55 0.65 16 28 C 0.02 0.09 9.02 60.06 0.54 0.64 16 29 H 0.06 0.27 6.37 -51.93 -0.33 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 6.69 -51.93 -0.35 -0.02 16 32 H 0.08 0.38 6.22 -51.93 -0.32 0.06 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.56 6.83 -51.93 -0.35 0.20 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.41 3.08 7.94 -40.82 -0.32 2.76 16 37 H 0.42 6.36 8.29 -40.82 -0.34 6.02 16 38 H 0.16 2.79 5.91 -52.49 -0.31 2.48 16 39 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 41 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.07 0.29 8.05 -51.93 -0.42 -0.13 16 45 H 0.07 0.32 6.27 -51.93 -0.33 0.00 16 46 H 0.07 0.35 6.52 -51.93 -0.34 0.02 16 47 H 0.07 0.31 8.01 -51.93 -0.42 -0.11 16 48 H 0.03 0.14 8.12 -51.92 -0.42 -0.28 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -33.58 393.66 -7.72 -41.30 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.14 Total: 6.35 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.35 Total: 5.53 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.65 Total: -59.62 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.58 -7.72 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330333283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.859 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds