Wall clock time and date at job start Tue Mar 31 2020 19:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47885 * 2 1 4 4 C 1.53001 * 109.47110 * 120.00345 * 2 1 3 5 5 C 1.53005 * 109.46854 * 294.71069 * 4 2 1 6 6 N 1.46499 * 109.47011 * 185.22167 * 5 4 2 7 7 C 1.34773 * 119.99608 * 179.97438 * 6 5 4 8 8 O 1.21367 * 120.00586 * 0.02562 * 7 6 5 9 9 C 1.49344 * 119.99734 * 180.02562 * 7 6 5 10 10 O 1.21388 * 119.99996 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00070 * 180.02562 * 9 7 6 12 12 C 1.39928 * 119.99938 * 179.97438 * 11 9 7 13 13 C 1.40461 * 125.98183 * 0.02562 * 12 11 9 14 14 C 1.35217 * 107.86623 * 179.70976 * 13 12 11 15 15 N 1.34990 * 107.87772 * 0.43000 * 14 13 12 16 16 C 1.46495 * 125.97367 * 179.83448 * 15 14 13 17 17 C 1.50698 * 109.47151 * 124.71255 * 16 15 14 18 18 H 1.07996 * 120.00085 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99974 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00113 * 179.72230 * 19 17 16 21 21 Si 1.86796 * 120.00105 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47249 * 269.72285 * 21 19 17 23 23 H 1.48500 * 109.47041 * 29.72380 * 21 19 17 24 24 H 1.48502 * 109.47607 * 149.72346 * 21 19 17 25 25 N 1.31270 * 125.97864 * 179.97438 * 12 11 9 26 26 N 1.46904 * 109.47152 * 239.99871 * 2 1 3 27 27 C 1.46896 * 110.99980 * 58.17918 * 26 2 1 28 28 C 1.46897 * 111.00333 * 182.14023 * 26 2 1 29 29 H 1.09001 * 109.47214 * 59.99613 * 1 2 3 30 30 H 1.08999 * 109.47885 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47355 * 300.00222 * 1 2 3 32 32 H 1.08998 * 109.47647 * 174.71324 * 4 2 1 33 33 H 1.08999 * 109.47094 * 54.70483 * 4 2 1 34 34 H 1.09002 * 109.46711 * 65.22746 * 5 4 2 35 35 H 1.08993 * 109.47260 * 305.22658 * 5 4 2 36 36 H 0.96998 * 120.00209 * 0.02562 * 6 5 4 37 37 H 0.97003 * 119.99565 * 359.97438 * 11 9 7 38 38 H 1.07998 * 126.06421 * 359.97438 * 13 12 11 39 39 H 1.07999 * 126.06247 * 180.25749 * 14 13 12 40 40 H 1.08999 * 109.47158 * 4.71569 * 16 15 14 41 41 H 1.09003 * 109.46959 * 244.71290 * 16 15 14 42 42 H 0.97000 * 120.00328 * 180.27492 * 20 19 17 43 43 H 1.09005 * 109.46936 * 60.00130 * 27 26 2 44 44 H 1.09001 * 109.47119 * 180.02562 * 27 26 2 45 45 H 1.08997 * 109.47821 * 300.00389 * 27 26 2 46 46 H 1.08995 * 109.47397 * 66.30851 * 28 26 2 47 47 H 1.08997 * 109.47306 * 186.32079 * 28 26 2 48 48 H 1.09008 * 109.46932 * 306.31853 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0726 2.4950 6 7 2.2348 -0.5496 3.6811 7 6 2.0185 -0.0178 4.9004 8 8 1.3318 0.9762 5.0160 9 6 2.6239 -0.6517 6.1096 10 8 3.3111 -1.6456 5.9941 11 7 2.4072 -0.1203 7.3291 12 6 2.9740 -0.7145 8.4620 13 6 3.7855 -1.8609 8.4740 14 6 4.1349 -2.1086 9.7565 15 7 3.5612 -1.1642 10.5320 16 6 3.6771 -1.0599 11.9886 17 6 4.1904 0.3088 12.3550 18 1 4.4081 1.0291 11.5803 19 6 4.3811 0.6419 13.6792 20 7 4.8343 1.8345 13.9987 21 14 4.0040 -0.6036 15.0193 22 1 2.5904 -0.4553 15.4493 23 1 4.2204 -1.9759 14.4946 24 1 4.9013 -0.3700 16.1792 25 7 2.8411 -0.2977 9.6997 26 7 2.0196 -0.6925 -1.1994 27 6 1.5134 -0.0521 -2.4207 28 6 3.4872 -0.7567 -1.2081 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.1258 -0.8041 1.2032 33 1 1.6013 -1.7180 1.2978 34 1 0.5556 0.0763 2.5914 35 1 2.0015 1.0972 2.4034 36 1 2.7839 -1.3438 3.5888 37 1 1.8583 0.6742 7.4213 38 1 4.0817 -2.4392 7.6113 39 1 4.7595 -2.9199 10.1000 40 1 4.3708 -1.8175 12.3531 41 1 2.6985 -1.2145 12.4430 42 1 4.9722 2.0675 14.9301 43 1 1.8497 0.9843 -2.4536 44 1 1.8907 -0.5849 -3.2935 45 1 0.4238 -0.0805 -2.4211 46 1 3.8280 -1.3912 -0.3900 47 1 3.8271 -1.1726 -2.1566 48 1 3.8954 0.2464 -1.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330333283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:42 Heat of formation + Delta-G solvation = 1.260654 kcal Electronic energy + Delta-G solvation = -27867.432818 eV Core-core repulsion = 23766.015022 eV Total energy + Delta-G solvation = -4101.417795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46368 -41.53770 -39.87460 -39.25641 -36.88444 -36.09276 -35.20036 -33.33015 -33.14125 -31.05731 -30.25524 -29.25917 -28.28686 -26.52555 -25.47810 -24.36943 -23.51311 -22.59239 -21.84454 -21.23364 -20.70421 -19.45806 -19.12050 -18.28459 -17.84346 -17.33979 -17.18573 -16.88831 -16.50066 -16.18286 -16.10539 -15.72506 -15.68958 -15.38571 -15.06157 -14.85819 -14.82370 -14.45596 -14.15495 -13.90543 -13.83126 -13.45190 -13.21673 -13.10809 -12.82473 -12.76966 -12.73193 -12.64878 -12.56391 -12.21439 -12.16319 -11.87281 -11.82582 -11.72425 -11.54859 -11.47686 -10.87724 -10.80580 -10.36144 -9.84975 -9.28740 -9.21104 -8.37251 -6.48204 0.03455 0.84375 1.12357 1.37095 1.40723 1.49383 1.73434 1.81951 2.25007 2.29481 2.55381 2.95588 2.96640 3.24303 3.86934 3.87295 3.89883 4.01333 4.17484 4.30667 4.34361 4.43425 4.51576 4.55490 4.56242 4.66068 4.70294 4.75012 4.81656 4.84741 4.85779 4.93718 4.95750 4.97821 5.04110 5.08879 5.14214 5.23881 5.24464 5.39840 5.74689 5.78837 5.98299 6.09672 6.11739 6.14710 6.38364 6.54685 6.58155 6.77769 6.93093 7.14873 8.79833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.001589 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.955825 B =17614.420530 C =17875.843680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.119 4.119 5 C 0.118 3.882 6 N -0.680 5.680 7 C 0.523 3.477 8 O -0.537 6.537 9 C 0.518 3.482 10 O -0.506 6.506 11 N -0.603 5.603 12 C 0.258 3.742 13 C -0.288 4.288 14 C 0.066 3.934 15 N -0.340 5.340 16 C 0.238 3.762 17 C -0.550 4.550 18 H 0.025 0.975 19 C 0.014 3.986 20 N -0.943 5.943 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.226 1.226 24 H -0.279 1.279 25 N -0.345 5.345 26 N -0.553 5.553 27 C 0.020 3.980 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.423 0.577 37 H 0.427 0.573 38 H 0.178 0.822 39 H 0.216 0.784 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.272 0.728 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -10.278 -30.854 33.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 H 0.060 0.940 4 C -0.157 4.157 5 C -0.005 4.005 6 N -0.333 5.333 7 C 0.302 3.698 8 O -0.415 6.415 9 C 0.298 3.702 10 O -0.379 6.379 11 N -0.252 5.252 12 C 0.004 3.996 13 C -0.319 4.319 14 C -0.082 4.082 15 N -0.122 5.122 16 C 0.118 3.882 17 C -0.588 4.588 18 H 0.043 0.957 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.192 1.192 23 H -0.149 1.149 24 H -0.204 1.204 25 N -0.175 5.175 26 N -0.278 5.278 27 C -0.128 4.128 28 C -0.131 4.131 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.261 0.739 37 H 0.265 0.735 38 H 0.195 0.805 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.551 -9.766 -29.892 32.122 hybrid contribution 0.657 0.814 0.330 1.097 sum -5.894 -8.952 -29.562 31.445 Atomic orbital electron populations 1.21981 0.93543 1.02867 1.02451 1.21555 0.96320 0.95209 0.89371 0.94050 1.21811 1.02573 1.00087 0.91220 1.21654 0.99082 0.97265 0.82483 1.45666 1.51349 1.31614 1.04704 1.19443 0.81576 0.84222 0.84549 1.90807 1.38786 1.25539 1.86335 1.20348 0.81559 0.84400 0.83843 1.90681 1.36981 1.24490 1.85724 1.42152 1.49592 1.30649 1.02829 1.19381 0.98352 0.95152 0.86765 1.21804 1.09678 1.02032 0.98372 1.23335 0.98744 0.95645 0.90517 1.48581 1.36538 1.19359 1.07697 1.19947 0.98706 0.97984 0.71519 1.21253 1.45696 0.98556 0.93305 0.95658 1.25942 0.93579 0.97782 1.01167 1.70055 1.46035 1.22569 1.19485 0.85604 0.78774 0.80178 0.77713 1.19207 1.14869 1.20401 1.77382 1.22399 1.18076 0.99685 1.62036 1.09990 1.53366 1.02379 1.22479 1.01578 0.96790 0.91968 1.22500 0.86803 1.00360 1.03419 0.91949 0.91716 0.91488 0.89989 0.89524 0.90187 0.91035 0.73869 0.73490 0.80481 0.76694 0.89437 0.93642 0.91896 0.95744 0.90796 0.90517 0.90513 0.90844 0.95679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.66 71.98 0.62 -0.71 16 2 C 0.08 0.81 2.13 44.91 0.10 0.91 16 3 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 4 C -0.12 -1.05 4.65 30.60 0.14 -0.90 16 5 C 0.12 1.46 5.30 86.38 0.46 1.91 16 6 N -0.68 -10.78 5.55 -464.51 -2.58 -13.35 16 7 C 0.52 12.21 7.89 87.24 0.69 12.90 16 8 O -0.54 -15.09 16.48 -3.30 -0.05 -15.14 16 9 C 0.52 14.41 7.85 87.24 0.69 15.09 16 10 O -0.51 -14.65 13.60 -3.36 -0.05 -14.69 16 11 N -0.60 -19.66 5.43 -308.88 -1.68 -21.34 16 12 C 0.26 10.17 8.10 133.40 1.08 11.25 16 13 C -0.29 -10.22 9.60 22.11 0.21 -10.01 16 14 C 0.07 2.28 11.43 83.51 0.95 3.23 16 15 N -0.34 -14.87 3.67 -351.85 -1.29 -16.16 16 16 C 0.24 10.80 5.33 85.63 0.46 11.26 16 17 C -0.55 -31.66 9.79 25.60 0.25 -31.41 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 19 C 0.01 0.80 5.47 84.65 0.46 1.26 16 20 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 21 Si 0.96 40.35 27.47 68.60 1.88 42.23 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.23 -8.09 6.54 99.48 0.65 -7.44 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 25 N -0.34 -16.06 12.42 -54.54 -0.68 -16.73 16 26 N -0.55 -5.71 4.89 -923.29 -4.51 -10.23 16 27 C 0.02 0.17 9.15 127.69 1.17 1.34 16 28 C 0.02 0.15 9.02 127.69 1.15 1.30 16 29 H 0.06 0.50 6.37 -2.39 -0.02 0.49 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.58 6.69 -2.39 -0.02 0.56 16 32 H 0.08 0.65 6.22 -2.39 -0.01 0.64 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.02 6.83 -2.39 -0.02 1.01 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 5.39 7.94 -92.71 -0.74 4.66 16 37 H 0.43 13.22 8.29 -92.71 -0.77 12.45 16 38 H 0.18 5.69 5.91 -2.91 -0.02 5.68 16 39 H 0.22 5.22 8.06 -2.91 -0.02 5.20 16 40 H 0.09 3.39 7.13 -2.39 -0.02 3.37 16 41 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.02 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.07 0.53 8.05 -2.39 -0.02 0.51 16 45 H 0.08 0.58 6.27 -2.39 -0.01 0.57 16 46 H 0.08 0.61 6.52 -2.39 -0.02 0.59 16 47 H 0.07 0.56 8.01 -2.39 -0.02 0.54 16 48 H 0.02 0.23 8.12 -2.38 -0.02 0.21 16 Total: -1.00 -76.11 393.66 -0.78 -76.89 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.56 Total: 29.05 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 8.43 Total: 17.41 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -10.44 Total: -135.75 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.10 Total: -29.83 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.23 kcal Total: -76.11 -0.78 -76.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330333283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.149 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds