Wall clock time and date at job start Tue Mar 31 2020 19:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46252 * 2 1 4 4 N 1.46494 * 109.47012 * 119.99867 * 2 1 3 5 5 C 1.36934 * 120.00124 * 275.00211 * 4 2 1 6 6 H 1.08002 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99758 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46999 * 90.00355 * 9 7 5 11 11 H 1.48497 * 109.47181 * 210.00289 * 9 7 5 12 12 H 1.48505 * 109.47230 * 330.00511 * 9 7 5 13 13 C 1.52992 * 109.47105 * 240.00211 * 2 1 3 14 14 H 1.09005 * 109.51595 * 65.09675 * 13 2 1 15 15 C 1.53296 * 109.55408 * 185.22736 * 13 2 1 16 16 N 1.47157 * 108.38524 * 172.25058 * 15 13 2 17 17 C 1.34773 * 120.97732 * 129.45232 * 16 15 13 18 18 O 1.21280 * 120.00817 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47373 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47335 * 180.02562 * 20 19 17 22 22 N 1.46498 * 109.46992 * 179.97438 * 21 20 19 23 23 C 1.34438 * 126.82219 * 124.99536 * 22 21 20 24 24 N 1.30828 * 108.07526 * 179.97438 * 23 22 21 25 25 C 1.33241 * 109.83072 * 0.02562 * 24 23 22 26 26 N 1.30704 * 108.94759 * 359.74737 * 25 24 23 27 27 C 1.47164 * 118.07636 * 309.49736 * 16 15 13 28 28 C 1.53300 * 108.37481 * 50.45392 * 27 16 15 29 29 O 1.42961 * 109.26618 * 307.77372 * 28 27 16 30 30 H 1.08995 * 109.47520 * 299.99662 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.00176 * 1 2 3 32 32 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 33 33 H 0.97004 * 119.99469 * 95.00343 * 4 2 1 34 34 H 0.97002 * 119.99613 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.68127 * 291.96981 * 15 13 2 36 36 H 1.08996 * 109.68407 * 52.48917 * 15 13 2 37 37 H 1.08996 * 109.47208 * 299.99899 * 19 17 16 38 38 H 1.09000 * 109.47161 * 59.99875 * 19 17 16 39 39 H 1.09009 * 109.47188 * 299.99996 * 20 19 17 40 40 H 1.09000 * 109.47058 * 59.99838 * 20 19 17 41 41 H 1.08998 * 109.46405 * 299.99940 * 21 20 19 42 42 H 1.09002 * 109.46765 * 59.99785 * 21 20 19 43 43 H 1.08002 * 125.95667 * 359.93488 * 23 22 21 44 44 H 1.08005 * 125.52346 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.64217 * 290.76056 * 27 16 15 46 46 H 1.08999 * 109.72598 * 170.19708 * 27 16 15 47 47 H 1.09002 * 109.51290 * 187.82368 * 28 27 16 48 48 H 1.08997 * 109.51158 * 67.72466 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8918 1.0404 2.4244 7 6 2.6113 -0.6620 3.5093 8 7 2.9243 -1.9391 3.4501 9 14 2.7903 0.2700 5.1182 10 1 1.5225 0.1798 5.8862 11 1 3.8944 -0.3238 5.9140 12 1 3.0962 1.6950 4.8334 13 6 2.0400 -0.7212 -1.2492 14 1 1.7535 -0.1579 -2.1374 15 6 3.5673 -0.8373 -1.1871 16 7 4.0134 -1.6926 -2.2983 17 6 4.9965 -1.2936 -3.1294 18 8 5.5272 -0.2152 -2.9675 19 6 5.4364 -2.1876 -4.2601 20 6 6.5567 -1.5028 -5.0455 21 6 7.0029 -2.4102 -6.1938 22 7 8.0752 -1.7542 -6.9461 23 6 9.2951 -2.2530 -7.2112 24 7 9.9555 -1.3626 -7.9060 25 6 9.1939 -0.2872 -8.1029 26 7 8.0312 -0.4814 -7.5382 27 6 3.3542 -2.9962 -2.4767 28 6 1.8372 -2.7749 -2.4749 29 8 1.4705 -2.0311 -1.3104 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 3.2476 -2.3963 4.2422 35 1 4.0149 0.1520 -1.2828 36 1 3.8632 -1.2837 -0.2378 37 1 5.8004 -3.1321 -3.8559 38 1 4.5921 -2.3773 -4.9228 39 1 6.1922 -0.5584 -5.4497 40 1 7.4011 -1.3127 -4.3830 41 1 7.3671 -3.3548 -5.7899 42 1 6.1582 -2.5999 -6.8562 43 1 9.6655 -3.2197 -6.9036 44 1 9.4882 0.5996 -8.6447 45 1 3.6292 -3.6610 -1.6579 46 1 3.6598 -3.4362 -3.4260 47 1 1.3287 -3.7390 -2.4661 48 1 1.5492 -2.2195 -3.3674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330422762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:33 Heat of formation + Delta-G solvation = 3.094615 kcal Electronic energy + Delta-G solvation = -29208.579090 eV Core-core repulsion = 25107.240821 eV Total energy + Delta-G solvation = -4101.338269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.94705 -41.46185 -39.70458 -37.10930 -36.52967 -35.76402 -34.18452 -33.23805 -32.14798 -31.62662 -30.15800 -29.35977 -27.79529 -25.89029 -25.06117 -24.24068 -23.20392 -22.86322 -22.00561 -21.21943 -20.12310 -19.33573 -18.55497 -17.96055 -17.56240 -17.18931 -16.91414 -16.66471 -16.40556 -16.00236 -15.96836 -15.79272 -15.41759 -15.11683 -15.03045 -14.89160 -14.53444 -14.25637 -13.98767 -13.78433 -13.47602 -13.33409 -13.21442 -13.01043 -12.78903 -12.63544 -12.60189 -12.49674 -12.47384 -12.19442 -11.85259 -11.77579 -11.69409 -11.51853 -11.10087 -10.99153 -10.95129 -10.82770 -10.78116 -10.58487 -9.58111 -8.96217 -7.91760 -5.18567 0.72948 1.46010 1.46626 1.47536 1.55558 1.57447 1.88918 2.03328 2.56436 2.82693 3.34907 3.42350 3.55712 3.59845 3.70676 3.85621 3.93214 3.98344 4.00245 4.09168 4.14058 4.22380 4.28307 4.30973 4.38449 4.44758 4.50535 4.56076 4.62893 4.64207 4.81741 4.84990 4.89206 4.97934 5.04110 5.10057 5.19004 5.22004 5.32642 5.35610 5.48685 5.52545 5.60594 5.98153 6.27820 6.32519 6.37838 7.10638 7.14602 7.37365 8.12711 8.38419 9.31395 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.002151 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.869739 B =13016.695912 C =13799.385754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.171 3.829 3 H 0.054 0.946 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.073 0.927 7 C -0.075 4.075 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.273 1.273 13 C 0.095 3.905 14 H 0.074 0.926 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.502 3.498 18 O -0.596 6.596 19 C -0.122 4.122 20 C -0.108 4.108 21 C 0.129 3.871 22 N -0.383 5.383 23 C 0.259 3.741 24 N -0.584 5.584 25 C 0.187 3.813 26 N -0.356 5.356 27 C 0.069 3.931 28 C 0.038 3.962 29 O -0.385 6.385 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.150 0.850 42 H 0.110 0.890 43 H 0.264 0.736 44 H 0.234 0.766 45 H 0.072 0.928 46 H 0.144 0.856 47 H 0.130 0.870 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -8.595 -25.312 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.072 0.928 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.091 0.909 7 C -0.267 4.267 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.198 1.198 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.293 3.707 18 O -0.477 6.477 19 C -0.162 4.162 20 C -0.147 4.147 21 C 0.009 3.991 22 N -0.174 5.174 23 C -0.037 4.037 24 N -0.312 5.312 25 C -0.116 4.116 26 N -0.185 5.185 27 C -0.053 4.053 28 C -0.039 4.039 29 O -0.304 6.304 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.168 0.832 42 H 0.128 0.872 43 H 0.279 0.721 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.161 0.839 47 H 0.147 0.853 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.667 -7.525 -25.063 26.581 hybrid contribution 0.389 0.487 1.496 1.621 sum 5.056 -7.038 -23.566 25.109 Atomic orbital electron populations 1.22136 0.96867 1.01218 1.00384 1.20507 0.93821 0.94489 0.85006 0.92766 1.42484 1.78005 1.10425 1.05695 1.19606 1.34625 0.94084 0.88423 0.90868 1.25464 1.03255 0.96876 1.01127 1.69817 1.52700 1.10032 1.29134 0.85230 0.76798 0.77999 0.80288 1.21524 1.22422 1.19797 1.22534 0.90643 0.84958 0.98253 0.90818 1.21969 0.95573 0.95876 0.89512 1.48370 1.36928 1.19966 1.29453 1.21647 0.78189 0.87229 0.83626 1.90709 1.56651 1.25913 1.74437 1.21657 1.00771 0.99194 0.94582 1.21433 0.98080 0.98988 0.96236 1.22180 0.89272 0.95611 0.92049 1.50758 1.14041 1.12141 1.40438 1.26979 0.82188 1.01014 0.93489 1.70535 1.34644 1.03322 1.22700 1.26482 0.87492 0.99070 0.98564 1.78002 1.23983 0.99021 1.17478 1.22788 0.93607 0.83403 1.05473 1.23275 0.94120 0.98283 0.88245 1.88068 1.70930 1.27064 1.44352 0.94458 0.91541 0.93343 0.78983 0.94235 0.91089 0.92438 0.84655 0.84682 0.93165 0.93256 0.83246 0.87182 0.72071 0.75024 0.90950 0.83875 0.85267 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.30 71.98 0.67 -4.59 16 2 C 0.17 6.79 2.81 44.99 0.13 6.92 16 3 H 0.05 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -36.41 4.24 -322.95 -1.37 -37.78 16 5 C -0.24 -13.12 9.93 84.04 0.83 -12.28 16 6 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 7 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 9 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.10 3.14 2.57 30.69 0.08 3.22 16 14 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 15 C 0.09 3.36 5.82 86.35 0.50 3.87 16 16 N -0.61 -15.97 3.02 -817.30 -2.47 -18.44 16 17 C 0.50 12.85 7.71 87.66 0.68 13.52 16 18 O -0.60 -22.06 15.45 -3.03 -0.05 -22.11 16 19 C -0.12 -1.36 4.07 29.85 0.12 -1.24 16 20 C -0.11 -1.63 4.72 30.60 0.14 -1.49 16 21 C 0.13 0.88 6.55 86.38 0.57 1.45 16 22 N -0.38 -5.63 3.69 -352.05 -1.30 -6.93 16 23 C 0.26 3.20 12.63 180.36 2.28 5.48 16 24 N -0.58 -11.12 11.19 -204.00 -2.28 -13.40 16 25 C 0.19 3.61 13.03 180.77 2.36 5.97 16 26 N -0.36 -7.74 12.57 -61.25 -0.77 -8.51 16 27 C 0.07 1.15 6.54 86.35 0.56 1.71 16 28 C 0.04 0.69 6.98 72.08 0.50 1.20 16 29 O -0.39 -11.88 9.24 -148.98 -1.38 -13.26 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.82 7.56 -2.38 -0.02 1.80 16 33 H 0.38 20.55 7.07 -92.71 -0.66 19.89 16 34 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.07 2.82 7.08 -2.38 -0.02 2.81 16 36 H 0.06 2.51 6.93 -2.39 -0.02 2.49 16 37 H 0.14 0.58 8.02 -2.39 -0.02 0.56 16 38 H 0.14 0.55 7.65 -2.39 -0.02 0.53 16 39 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 40 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 41 H 0.15 -0.32 8.09 -2.39 -0.02 -0.34 16 42 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.26 0.28 8.06 -2.91 -0.02 0.26 16 44 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.14 0.80 6.05 -2.39 -0.01 0.78 16 47 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -88.33 393.48 2.89 -85.44 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.31 Total: 25.14 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 9.89 Total: 19.87 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.91 Total: -144.04 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.42 Total: -35.37 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -88.33 2.89 -85.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.530 kcal (2) G-P(sol) polarization free energy of solvation -88.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds