Wall clock time and date at job start Tue Mar 31 2020 19:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47192 * 2 1 4 4 N 1.46498 * 109.47177 * 120.00029 * 2 1 3 5 5 C 1.36937 * 119.99924 * 275.00022 * 4 2 1 6 6 H 1.07997 * 120.00339 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99539 * 179.97438 * 5 4 2 8 8 N 1.31612 * 120.00350 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46935 * 60.00370 * 9 7 5 11 11 H 1.48497 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47252 * 300.00692 * 9 7 5 13 13 C 1.52996 * 109.47001 * 240.00119 * 2 1 3 14 14 H 1.09005 * 109.51341 * 184.89950 * 13 2 1 15 15 C 1.52881 * 109.62683 * 64.90902 * 13 2 1 16 16 N 1.47145 * 108.61002 * 187.89495 * 15 13 2 17 17 C 1.34779 * 120.98276 * 230.49853 * 16 15 13 18 18 O 1.21273 * 120.00093 * 359.72084 * 17 16 15 19 19 C 1.50706 * 119.99767 * 179.71561 * 17 16 15 20 20 C 1.53000 * 109.46735 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47060 * 180.02562 * 20 19 17 22 22 N 1.46500 * 109.47473 * 180.02562 * 21 20 19 23 23 C 1.34432 * 126.82486 * 124.70718 * 22 21 20 24 24 N 1.30828 * 108.08020 * 179.89762 * 23 22 21 25 25 C 1.33243 * 109.82701 * 0.38275 * 24 23 22 26 26 N 1.30716 * 108.94395 * 359.76073 * 25 24 23 27 27 C 1.47157 * 118.03601 * 50.22528 * 16 15 13 28 28 C 1.53297 * 108.38286 * 309.71659 * 27 16 15 29 29 O 1.42958 * 109.51452 * 305.00049 * 13 2 1 30 30 H 1.09002 * 109.47151 * 299.99797 * 1 2 3 31 31 H 1.08998 * 109.47032 * 59.99778 * 1 2 3 32 32 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99840 * 95.00016 * 4 2 1 34 34 H 0.97001 * 120.00463 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.61785 * 68.07611 * 15 13 2 36 36 H 1.08998 * 109.52030 * 307.66379 * 15 13 2 37 37 H 1.09001 * 109.46797 * 60.00350 * 19 17 16 38 38 H 1.08992 * 109.47518 * 300.00347 * 19 17 16 39 39 H 1.09002 * 109.47398 * 300.00410 * 20 19 17 40 40 H 1.09001 * 109.47194 * 60.00591 * 20 19 17 41 41 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 42 42 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 43 43 H 1.08003 * 125.95564 * 0.04530 * 23 22 21 44 44 H 1.08001 * 125.52890 * 179.80297 * 25 24 23 45 45 H 1.09003 * 109.67864 * 69.43949 * 27 16 15 46 46 H 1.08999 * 109.68310 * 189.98948 * 27 16 15 47 47 H 1.09007 * 109.51011 * 172.22129 * 28 27 16 48 48 H 1.08996 * 109.51424 * 292.32540 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6114 -0.6621 3.5092 8 7 2.9244 -1.9390 3.4501 9 14 2.7905 0.2700 5.1182 10 1 1.4684 0.8077 5.5285 11 1 3.2993 -0.6484 6.1683 12 1 3.7464 1.3918 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 3.1265 -0.7982 -1.2072 15 6 1.6354 0.0644 -2.4968 16 7 1.9668 -0.7380 -3.6849 17 6 2.6710 -0.2090 -4.7051 18 8 3.0371 0.9460 -4.6545 19 6 3.0035 -1.0529 -5.9086 20 6 3.8031 -0.2185 -6.9112 21 6 4.1402 -1.0750 -8.1334 22 7 4.9064 -0.2763 -9.0932 23 6 6.1104 -0.5755 -9.6109 24 7 6.4516 0.3874 -10.4283 25 6 5.4990 1.3187 -10.4522 26 7 4.5318 0.9571 -9.6507 27 6 1.5118 -2.1369 -3.7237 28 6 1.9270 -2.8168 -2.4140 29 8 1.4705 -2.0310 -1.3104 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1525 34 1 3.2477 -2.3964 4.2420 35 1 2.1800 1.0081 -2.5277 36 1 0.5633 0.2593 -2.4727 37 1 2.0814 -1.3981 -6.3762 38 1 3.5967 -1.9125 -5.5970 39 1 3.2103 0.6414 -7.2230 40 1 4.7253 0.1263 -6.4433 41 1 4.7329 -1.9351 -7.8220 42 1 3.2180 -1.4195 -8.6012 43 1 6.6932 -1.4581 -9.3921 44 1 5.5219 2.2249 -11.0393 45 1 0.4269 -2.1674 -3.8253 46 1 1.9745 -2.6503 -4.5666 47 1 1.4816 -3.8104 -2.3624 48 1 3.0130 -2.9023 -2.3765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330422782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:37 Heat of formation + Delta-G solvation = 28.186000 kcal Electronic energy + Delta-G solvation = -28924.459126 eV Core-core repulsion = 24824.208902 eV Total energy + Delta-G solvation = -4100.250225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39520 -40.53043 -38.62663 -35.99555 -35.57946 -34.60717 -32.81618 -32.34467 -31.55207 -30.38421 -28.68698 -28.14318 -26.74865 -24.83185 -23.54748 -23.49674 -22.37702 -22.14800 -21.42353 -19.72420 -19.27733 -17.92044 -17.35228 -17.12809 -16.59534 -16.40326 -15.91408 -15.83566 -15.33701 -15.07799 -15.01113 -14.56459 -14.44285 -14.39985 -13.89908 -13.56091 -13.35494 -13.25989 -12.85305 -12.73976 -12.65769 -12.40894 -12.11618 -12.07531 -11.90924 -11.37653 -11.32514 -11.16695 -10.85665 -10.74553 -10.57833 -10.38202 -10.33049 -10.17120 -10.13125 -10.07280 -9.88318 -9.84001 -9.65893 -8.90409 -8.56722 -6.94974 -5.74742 -3.03546 1.26303 1.89009 2.41374 2.62087 2.70757 3.44887 3.49289 3.50130 3.87590 3.90723 3.95236 4.10900 4.32970 4.53779 4.56022 4.60587 4.65838 4.68465 4.73799 4.83516 4.91831 5.01446 5.03247 5.14706 5.27992 5.39388 5.51358 5.57718 5.62037 5.64833 5.76761 5.78856 5.86139 5.95007 5.96014 6.06480 6.16868 6.30532 6.39969 6.43640 6.62947 6.80123 7.13145 7.18175 7.42274 7.70360 7.71147 7.95710 8.43446 9.55331 10.12545 10.49241 11.47590 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001894 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.844271 B =14781.276806 C =15172.008679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.062 0.938 15 C 0.082 3.918 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.537 6.537 19 C -0.137 4.137 20 C -0.116 4.116 21 C 0.129 3.871 22 N -0.378 5.378 23 C 0.253 3.747 24 N -0.549 5.549 25 C 0.196 3.804 26 N -0.314 5.314 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.219 0.781 44 H 0.217 0.783 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -3.906 -27.001 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 H 0.080 0.920 15 C -0.041 4.041 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.414 6.414 19 C -0.178 4.178 20 C -0.155 4.155 21 C 0.007 3.993 22 N -0.169 5.169 23 C -0.044 4.044 24 N -0.276 5.276 25 C -0.107 4.107 26 N -0.142 5.142 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.235 0.765 44 H 0.233 0.767 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.122 0.878 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.103 -2.854 -26.703 26.855 hybrid contribution 0.336 -0.158 0.877 0.952 sum 0.439 -3.012 -25.826 26.005 Atomic orbital electron populations 1.22415 0.98642 1.01609 0.99563 1.20193 0.92841 0.94620 0.84955 0.92304 1.42337 1.77881 1.10937 1.04866 1.19206 1.36704 0.93853 0.87358 0.91211 1.24737 1.02172 0.95967 0.98022 1.69662 1.50728 1.08639 1.28913 0.86277 0.77780 0.78592 0.83582 1.21277 1.21732 1.21296 1.22893 0.97613 0.83011 0.94785 0.91953 1.22412 1.02054 0.95890 0.83734 1.48205 1.54857 1.12790 1.18946 1.20513 0.77529 0.87900 0.83810 1.90732 1.52822 1.17912 1.79937 1.21595 1.02284 0.99372 0.94504 1.21595 1.02053 0.98790 0.93076 1.21894 0.96932 0.92472 0.88012 1.50566 1.15821 1.16407 1.34079 1.26106 0.86321 0.99706 0.92296 1.70543 1.30466 1.03692 1.22941 1.26042 0.87717 0.99647 0.97295 1.78081 1.24383 0.96606 1.15115 1.22527 1.00932 0.81700 1.00004 1.22904 0.99481 0.95266 0.85668 1.88115 1.67661 1.25695 1.46050 0.92870 0.94687 0.92441 0.77691 0.93521 0.88238 0.90115 0.88399 0.88442 0.89416 0.90339 0.87824 0.89046 0.76499 0.76707 0.90301 0.89184 0.87827 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.06 37.16 0.34 -2.61 16 2 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.08 5.10 -53.43 -0.27 -18.35 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 9 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.08 1.27 2.59 -26.79 -0.07 1.20 16 14 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.08 1.15 5.81 -3.75 -0.02 1.13 16 16 N -0.61 -7.08 3.03 -172.53 -0.52 -7.60 16 17 C 0.51 5.98 7.71 -10.98 -0.08 5.90 16 18 O -0.54 -8.60 15.45 5.56 0.09 -8.51 16 19 C -0.14 -0.86 4.07 -27.88 -0.11 -0.97 16 20 C -0.12 -0.86 4.71 -26.73 -0.13 -0.99 16 21 C 0.13 0.59 6.55 -4.04 -0.03 0.56 16 22 N -0.38 -2.92 3.69 -62.63 -0.23 -3.15 16 23 C 0.25 1.74 12.63 -90.65 -1.14 0.60 16 24 N -0.55 -5.25 11.19 -15.83 -0.18 -5.42 16 25 C 0.20 1.80 13.03 -91.81 -1.20 0.60 16 26 N -0.31 -3.25 12.57 29.29 0.37 -2.88 16 27 C 0.07 0.60 6.54 -3.53 -0.02 0.57 16 28 C 0.04 0.49 6.98 37.31 0.26 0.75 16 29 O -0.36 -5.74 9.24 -35.23 -0.33 -6.06 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 32 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 33 H 0.39 10.53 7.58 -40.82 -0.31 10.22 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 36 H 0.08 1.09 6.25 -51.93 -0.32 0.77 16 37 H 0.10 0.40 8.01 -51.93 -0.42 -0.02 16 38 H 0.10 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.10 0.13 8.09 -51.93 -0.42 -0.29 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.22 0.48 8.06 -52.48 -0.42 0.06 16 44 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.42 6.05 -51.93 -0.31 0.11 16 47 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -37.72 392.20 -9.57 -47.29 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.46 Total: 5.88 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.64 Total: 2.92 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.11 Total: -64.85 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.24 Total: -14.57 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.72 -9.57 -47.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.476 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds