Wall clock time and date at job start Tue Mar 31 2020 19:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47192 * 2 1 4 4 N 1.46498 * 109.47177 * 120.00029 * 2 1 3 5 5 C 1.36937 * 119.99924 * 275.00022 * 4 2 1 6 6 H 1.07997 * 120.00339 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99539 * 179.97438 * 5 4 2 8 8 N 1.31612 * 120.00350 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46935 * 60.00370 * 9 7 5 11 11 H 1.48497 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47252 * 300.00692 * 9 7 5 13 13 C 1.52996 * 109.47001 * 240.00119 * 2 1 3 14 14 H 1.09005 * 109.51341 * 184.89950 * 13 2 1 15 15 C 1.52881 * 109.62683 * 64.90902 * 13 2 1 16 16 N 1.47145 * 108.61002 * 187.89495 * 15 13 2 17 17 C 1.34779 * 120.98276 * 230.49853 * 16 15 13 18 18 O 1.21273 * 120.00093 * 359.72084 * 17 16 15 19 19 C 1.50706 * 119.99767 * 179.71561 * 17 16 15 20 20 C 1.53000 * 109.46735 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47060 * 180.02562 * 20 19 17 22 22 N 1.46500 * 109.47473 * 180.02562 * 21 20 19 23 23 C 1.34432 * 126.82486 * 124.70718 * 22 21 20 24 24 N 1.30828 * 108.08020 * 179.89762 * 23 22 21 25 25 C 1.33243 * 109.82701 * 0.38275 * 24 23 22 26 26 N 1.30716 * 108.94395 * 359.76073 * 25 24 23 27 27 C 1.47157 * 118.03601 * 50.22528 * 16 15 13 28 28 C 1.53297 * 108.38286 * 309.71659 * 27 16 15 29 29 O 1.42958 * 109.51452 * 305.00049 * 13 2 1 30 30 H 1.09002 * 109.47151 * 299.99797 * 1 2 3 31 31 H 1.08998 * 109.47032 * 59.99778 * 1 2 3 32 32 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99840 * 95.00016 * 4 2 1 34 34 H 0.97001 * 120.00463 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.61785 * 68.07611 * 15 13 2 36 36 H 1.08998 * 109.52030 * 307.66379 * 15 13 2 37 37 H 1.09001 * 109.46797 * 60.00350 * 19 17 16 38 38 H 1.08992 * 109.47518 * 300.00347 * 19 17 16 39 39 H 1.09002 * 109.47398 * 300.00410 * 20 19 17 40 40 H 1.09001 * 109.47194 * 60.00591 * 20 19 17 41 41 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 42 42 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 43 43 H 1.08003 * 125.95564 * 0.04530 * 23 22 21 44 44 H 1.08001 * 125.52890 * 179.80297 * 25 24 23 45 45 H 1.09003 * 109.67864 * 69.43949 * 27 16 15 46 46 H 1.08999 * 109.68310 * 189.98948 * 27 16 15 47 47 H 1.09007 * 109.51011 * 172.22129 * 28 27 16 48 48 H 1.08996 * 109.51424 * 292.32540 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6114 -0.6621 3.5092 8 7 2.9244 -1.9390 3.4501 9 14 2.7905 0.2700 5.1182 10 1 1.4684 0.8077 5.5285 11 1 3.2993 -0.6484 6.1683 12 1 3.7464 1.3918 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 3.1265 -0.7982 -1.2072 15 6 1.6354 0.0644 -2.4968 16 7 1.9668 -0.7380 -3.6849 17 6 2.6710 -0.2090 -4.7051 18 8 3.0371 0.9460 -4.6545 19 6 3.0035 -1.0529 -5.9086 20 6 3.8031 -0.2185 -6.9112 21 6 4.1402 -1.0750 -8.1334 22 7 4.9064 -0.2763 -9.0932 23 6 6.1104 -0.5755 -9.6109 24 7 6.4516 0.3874 -10.4283 25 6 5.4990 1.3187 -10.4522 26 7 4.5318 0.9571 -9.6507 27 6 1.5118 -2.1369 -3.7237 28 6 1.9270 -2.8168 -2.4140 29 8 1.4705 -2.0310 -1.3104 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1525 34 1 3.2477 -2.3964 4.2420 35 1 2.1800 1.0081 -2.5277 36 1 0.5633 0.2593 -2.4727 37 1 2.0814 -1.3981 -6.3762 38 1 3.5967 -1.9125 -5.5970 39 1 3.2103 0.6414 -7.2230 40 1 4.7253 0.1263 -6.4433 41 1 4.7329 -1.9351 -7.8220 42 1 3.2180 -1.4195 -8.6012 43 1 6.6932 -1.4581 -9.3921 44 1 5.5219 2.2249 -11.0393 45 1 0.4269 -2.1674 -3.8253 46 1 1.9745 -2.6503 -4.5666 47 1 1.4816 -3.8104 -2.3624 48 1 3.0130 -2.9023 -2.3765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330422782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:36 Heat of formation + Delta-G solvation = 2.170055 kcal Electronic energy + Delta-G solvation = -28925.587263 eV Core-core repulsion = 24824.208902 eV Total energy + Delta-G solvation = -4101.378361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.94672 -41.50331 -39.73275 -37.13021 -36.53116 -35.73735 -34.36857 -33.23079 -32.14769 -31.84888 -29.95996 -29.19851 -27.67353 -26.37008 -24.96009 -24.25434 -23.24005 -22.86771 -22.01667 -21.18886 -20.12119 -19.30982 -18.54132 -17.96416 -17.58862 -17.19506 -16.98104 -16.60338 -16.50385 -16.08596 -16.02552 -15.75078 -15.42344 -15.24022 -15.07836 -14.88618 -14.39968 -14.30144 -14.01553 -13.81939 -13.53926 -13.35090 -13.28761 -13.03966 -12.81467 -12.64244 -12.58350 -12.44326 -12.36094 -12.22512 -11.85211 -11.82983 -11.65000 -11.56916 -11.16671 -10.99247 -10.93143 -10.84406 -10.78093 -10.58279 -9.58718 -9.01547 -7.93101 -5.21673 0.72809 1.45785 1.46668 1.49503 1.55198 1.56095 1.86299 2.03343 2.55955 2.80926 3.34145 3.40443 3.55892 3.58433 3.61054 3.84521 3.93076 3.96434 4.02214 4.10068 4.13515 4.17211 4.28659 4.35617 4.39054 4.41649 4.51787 4.53281 4.61058 4.63450 4.64480 4.84785 4.87238 4.97973 4.99460 5.08073 5.19416 5.23433 5.32572 5.33084 5.48624 5.50359 5.60442 5.98115 6.26785 6.29053 6.34114 7.08686 7.14724 7.34876 8.10296 8.35580 9.30024 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001894 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.844271 B =14781.276806 C =15172.008679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.054 0.946 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.094 3.906 14 H 0.038 0.962 15 C 0.091 3.909 16 N -0.616 5.616 17 C 0.505 3.495 18 O -0.593 6.593 19 C -0.124 4.124 20 C -0.109 4.109 21 C 0.128 3.872 22 N -0.383 5.383 23 C 0.259 3.741 24 N -0.584 5.584 25 C 0.187 3.813 26 N -0.356 5.356 27 C 0.075 3.925 28 C 0.033 3.967 29 O -0.384 6.384 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.263 0.737 44 H 0.233 0.767 45 H 0.092 0.908 46 H 0.140 0.860 47 H 0.129 0.871 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -5.810 -28.854 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.065 3.935 3 H 0.072 0.928 4 N -0.372 5.372 5 C -0.374 4.374 6 H 0.093 0.907 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.034 3.966 14 H 0.056 0.944 15 C -0.033 4.033 16 N -0.349 5.349 17 C 0.296 3.704 18 O -0.473 6.473 19 C -0.164 4.164 20 C -0.148 4.148 21 C 0.008 3.992 22 N -0.173 5.173 23 C -0.037 4.037 24 N -0.312 5.312 25 C -0.116 4.116 26 N -0.184 5.184 27 C -0.046 4.046 28 C -0.044 4.044 29 O -0.303 6.303 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.167 0.833 42 H 0.128 0.872 43 H 0.279 0.721 44 H 0.250 0.750 45 H 0.110 0.890 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.457 -4.763 -28.594 28.991 hybrid contribution 0.493 0.408 1.390 1.530 sum 0.035 -4.355 -27.204 27.550 Atomic orbital electron populations 1.22201 0.96885 1.01230 1.00359 1.20426 0.93922 0.94393 0.84732 0.92843 1.42492 1.78325 1.10452 1.05892 1.19602 1.35175 0.94180 0.88410 0.90730 1.25544 1.02970 0.96917 1.01381 1.69821 1.52451 1.10147 1.29405 0.85235 0.77930 0.77292 0.79434 1.20438 1.22122 1.20576 1.22400 0.95844 0.83993 0.94324 0.94437 1.22063 1.02022 0.95111 0.84094 1.48337 1.54751 1.13924 1.17879 1.21576 0.76176 0.87796 0.84868 1.90715 1.54813 1.20686 1.81117 1.21667 1.04303 0.98884 0.91557 1.21437 1.00265 0.98526 0.94553 1.22190 0.98565 0.92361 0.86103 1.50759 1.16391 1.15847 1.34347 1.26972 0.85943 1.00048 0.90741 1.70537 1.31293 1.04742 1.24666 1.26482 0.87549 1.00344 0.97231 1.77998 1.25671 0.98544 1.16224 1.22767 1.02170 0.79615 1.00075 1.23280 0.99622 0.95972 0.85502 1.88058 1.67933 1.25440 1.48860 0.94583 0.91284 0.93300 0.79197 0.94089 0.90188 0.89322 0.84776 0.84609 0.93120 0.93156 0.83298 0.87249 0.72117 0.75044 0.88989 0.84255 0.85283 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.06 71.98 0.65 -4.65 16 2 C 0.17 7.03 2.77 44.99 0.12 7.16 16 3 H 0.05 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -37.79 5.10 -322.95 -1.65 -39.44 16 5 C -0.24 -13.67 9.93 84.03 0.83 -12.84 16 6 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 8 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 9 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.09 3.15 2.59 30.55 0.08 3.23 16 14 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 15 C 0.09 2.52 5.81 86.22 0.50 3.02 16 16 N -0.62 -12.90 3.03 -818.15 -2.48 -15.37 16 17 C 0.50 10.91 7.71 87.66 0.68 11.58 16 18 O -0.59 -19.40 15.45 -3.01 -0.05 -19.44 16 19 C -0.12 -1.06 4.07 29.85 0.12 -0.94 16 20 C -0.11 -1.41 4.71 30.59 0.14 -1.27 16 21 C 0.13 0.70 6.55 86.38 0.57 1.26 16 22 N -0.38 -5.18 3.69 -352.06 -1.30 -6.48 16 23 C 0.26 2.97 12.63 180.36 2.28 5.24 16 24 N -0.58 -10.65 11.19 -204.00 -2.28 -12.93 16 25 C 0.19 3.44 13.03 180.76 2.36 5.79 16 26 N -0.36 -7.32 12.57 -61.24 -0.77 -8.09 16 27 C 0.08 0.94 6.54 86.35 0.57 1.51 16 28 C 0.03 0.64 6.98 72.08 0.50 1.14 16 29 O -0.38 -12.05 9.24 -148.98 -1.38 -13.43 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.99 6.42 -2.39 -0.02 1.98 16 32 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 33 H 0.38 21.07 7.58 -92.71 -0.70 20.36 16 34 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.08 2.53 7.08 -2.39 -0.02 2.52 16 36 H 0.09 2.29 6.25 -2.39 -0.01 2.27 16 37 H 0.13 0.28 8.01 -2.39 -0.02 0.26 16 38 H 0.14 0.21 7.66 -2.39 -0.02 0.19 16 39 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.15 -0.52 8.09 -2.39 -0.02 -0.54 16 42 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.26 0.08 8.06 -2.91 -0.02 0.05 16 44 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.14 0.39 6.05 -2.39 -0.01 0.37 16 47 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -89.07 392.20 2.54 -86.52 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.27 Total: 23.18 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 9.87 Total: 16.29 kcal Atomic # 7 Polarization: -133.74 SS G_CDS: -8.19 Total: -141.94 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.42 Total: -32.87 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -89.07 2.54 -86.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.691 kcal (2) G-P(sol) polarization free energy of solvation -89.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds