Wall clock time and date at job start Tue Mar 31 2020 19:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47228 * 90.00169 * 9 7 5 11 11 H 1.48497 * 109.47353 * 210.00332 * 9 7 5 12 12 H 1.48512 * 109.47060 * 330.00232 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.08994 * 109.51721 * 175.09902 * 13 2 1 15 15 C 1.53295 * 109.51403 * 295.25837 * 13 2 1 16 16 N 1.47156 * 108.38515 * 172.22339 * 15 13 2 17 17 C 1.34773 * 120.98167 * 129.48720 * 16 15 13 18 18 O 1.21283 * 120.00041 * 359.97423 * 17 16 15 19 19 C 1.50696 * 120.00024 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47398 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47610 * 180.02562 * 20 19 17 22 22 N 1.46493 * 109.47354 * 180.02562 * 21 20 19 23 23 C 1.34429 * 126.82336 * 125.00761 * 22 21 20 24 24 N 1.30829 * 108.08073 * 179.97438 * 23 22 21 25 25 C 1.33245 * 109.82696 * 359.97438 * 24 23 22 26 26 N 1.30710 * 108.94865 * 359.75041 * 25 24 23 27 27 C 1.47146 * 118.03490 * 309.46016 * 16 15 13 28 28 C 1.53299 * 108.38486 * 50.54054 * 27 16 15 29 29 O 1.42963 * 109.21803 * 307.69293 * 28 27 16 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 34 34 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.68153 * 291.94415 * 15 13 2 36 36 H 1.09000 * 109.68537 * 52.50104 * 15 13 2 37 37 H 1.08997 * 109.47726 * 299.99925 * 19 17 16 38 38 H 1.09001 * 109.47287 * 60.00001 * 19 17 16 39 39 H 1.09005 * 109.47035 * 300.00108 * 20 19 17 40 40 H 1.09000 * 109.47152 * 60.00185 * 20 19 17 41 41 H 1.08997 * 109.47046 * 300.00366 * 21 20 19 42 42 H 1.09000 * 109.46798 * 59.99863 * 21 20 19 43 43 H 1.07999 * 125.95960 * 359.91476 * 23 22 21 44 44 H 1.07995 * 125.52910 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.68473 * 290.81409 * 27 16 15 46 46 H 1.09001 * 109.71528 * 170.27683 * 27 16 15 47 47 H 1.09005 * 109.51397 * 187.77787 * 28 27 16 48 48 H 1.08995 * 109.55419 * 67.64371 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 4.1537 0.8554 -5.2021 11 1 2.5816 -0.6611 -6.2554 12 1 1.7813 1.3573 -5.1753 13 6 2.0400 -0.7212 1.2493 14 1 3.1264 -0.7982 1.2072 15 6 1.6295 0.0665 2.4987 16 7 1.9647 -0.7372 3.6849 17 6 2.6672 -0.2076 4.7058 18 8 3.0334 0.9476 4.6551 19 6 2.9979 -1.0506 5.9104 20 6 3.7958 -0.2156 6.9138 21 6 4.1321 -1.0717 8.1366 22 7 4.8956 -0.2720 9.0976 23 6 4.5947 -0.0631 10.3910 24 7 5.5223 0.7030 10.9051 25 6 6.4283 1.0019 9.9750 26 7 6.0911 0.4232 8.8525 27 6 1.5097 -2.1360 3.7238 28 6 1.9262 -2.8164 2.4147 29 8 1.4705 -2.0311 1.3104 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 -1.1525 34 1 3.2490 -2.3961 -4.2418 35 1 2.1708 1.0120 2.5309 36 1 0.5566 0.2577 2.4761 37 1 2.0751 -1.3956 6.3769 38 1 3.5917 -1.9104 5.6002 39 1 4.7187 0.1290 6.4472 40 1 3.2024 0.6444 7.2241 41 1 3.2095 -1.4167 8.6033 42 1 4.7257 -1.9315 7.8259 43 1 3.7363 -0.4579 10.9142 44 1 7.3022 1.6183 10.1253 45 1 0.4248 -2.1666 3.8245 46 1 1.9712 -2.6495 4.5673 47 1 1.4808 -3.8100 2.3631 48 1 3.0121 -2.9018 2.3773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330422786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:40 Heat of formation + Delta-G solvation = 28.176598 kcal Electronic energy + Delta-G solvation = -28923.778766 eV Core-core repulsion = 24823.528134 eV Total energy + Delta-G solvation = -4100.250632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39525 -40.52195 -38.61576 -35.99553 -35.57524 -34.60436 -32.81066 -32.34027 -31.55286 -30.37238 -28.68310 -28.14146 -26.73459 -24.83392 -23.54410 -23.49372 -22.37803 -22.15163 -21.42438 -19.71907 -19.27907 -17.92408 -17.34536 -17.11914 -16.60915 -16.38580 -15.91726 -15.83780 -15.33474 -15.08777 -14.96521 -14.62320 -14.48495 -14.29341 -13.92993 -13.54708 -13.35668 -13.24995 -12.89201 -12.70803 -12.65361 -12.38024 -12.13140 -12.08920 -11.89609 -11.39050 -11.31319 -11.16409 -10.86866 -10.73744 -10.57944 -10.38224 -10.31460 -10.17075 -10.12294 -10.06532 -9.87461 -9.83749 -9.65894 -8.90553 -8.56362 -6.94445 -5.74430 -3.03221 1.26466 1.88881 2.41251 2.61961 2.71048 3.44624 3.49867 3.51361 3.87419 3.91242 3.94245 4.10593 4.33644 4.53779 4.56221 4.59027 4.65615 4.69325 4.75720 4.81618 4.93139 5.01688 5.02984 5.13730 5.28385 5.39698 5.51036 5.58210 5.62435 5.65496 5.77160 5.79331 5.86216 5.95089 5.96072 6.06635 6.17040 6.30634 6.39961 6.43959 6.62959 6.80319 7.13180 7.18205 7.42729 7.71065 7.71173 7.95703 8.43730 9.55704 10.12942 10.49593 11.47970 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.001901 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.633102 B =14724.673432 C =15245.196724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.537 6.537 19 C -0.137 4.137 20 C -0.116 4.116 21 C 0.129 3.871 22 N -0.378 5.378 23 C 0.251 3.749 24 N -0.549 5.549 25 C 0.196 3.804 26 N -0.313 5.313 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.218 0.782 44 H 0.217 0.783 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -3.166 28.100 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.414 6.414 19 C -0.178 4.178 20 C -0.155 4.155 21 C 0.007 3.993 22 N -0.169 5.169 23 C -0.045 4.045 24 N -0.277 5.277 25 C -0.107 4.107 26 N -0.140 5.140 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.235 0.765 44 H 0.233 0.767 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.122 0.878 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.269 -2.373 27.399 27.531 hybrid contribution 0.056 -0.072 -0.718 0.724 sum -1.212 -2.446 26.681 26.820 Atomic orbital electron populations 1.22415 0.98650 1.01596 0.99548 1.20198 0.92836 0.94628 0.84970 0.92305 1.42345 1.77865 1.10943 1.04885 1.19251 1.36575 0.93863 0.87356 0.91158 1.24738 1.02187 0.95970 0.98042 1.69674 1.50784 1.08633 1.28825 0.86202 0.77776 0.78587 0.83688 1.21767 1.21811 1.20768 1.22979 0.97619 0.82965 0.94749 0.91872 1.22502 1.01938 0.95877 0.83745 1.48210 1.54865 1.12728 1.19008 1.20512 0.77513 0.87889 0.83846 1.90734 1.52725 1.17940 1.80020 1.21593 1.02128 0.99500 0.94536 1.21593 1.02316 0.98121 0.93471 1.21891 0.95092 0.93051 0.89284 1.50568 1.18467 1.38146 1.09694 1.26088 0.99534 0.95671 0.83250 1.70541 1.05147 1.18558 1.33416 1.26048 0.99587 0.99053 0.86016 1.78110 0.98506 1.13523 1.23879 1.22520 1.00874 0.81709 1.00037 1.22906 0.99526 0.95254 0.85653 1.88114 1.67710 1.25719 1.45998 0.92445 0.92868 0.94709 0.77691 0.93574 0.88237 0.90108 0.88500 0.88345 0.89348 0.90413 0.87873 0.89004 0.76539 0.76690 0.90320 0.89185 0.87831 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.06 37.16 0.34 -2.61 16 2 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.14 5.10 -53.43 -0.27 -18.41 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 9 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.27 2.61 -26.58 -0.07 1.20 16 14 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 15 C 0.08 1.15 5.82 -3.53 -0.02 1.13 16 16 N -0.61 -7.07 3.02 -172.28 -0.52 -7.59 16 17 C 0.51 5.98 7.71 -10.99 -0.08 5.89 16 18 O -0.54 -8.59 15.45 5.56 0.09 -8.51 16 19 C -0.14 -0.86 4.07 -27.89 -0.11 -0.97 16 20 C -0.12 -0.86 4.72 -26.73 -0.13 -0.98 16 21 C 0.13 0.59 6.55 -4.04 -0.03 0.56 16 22 N -0.38 -2.92 3.69 -62.64 -0.23 -3.15 16 23 C 0.25 1.69 12.63 -90.66 -1.14 0.54 16 24 N -0.55 -5.20 11.19 -15.83 -0.18 -5.37 16 25 C 0.20 1.82 13.03 -91.81 -1.20 0.62 16 26 N -0.31 -3.30 12.58 29.29 0.37 -2.93 16 27 C 0.07 0.60 6.54 -3.53 -0.02 0.58 16 28 C 0.04 0.49 6.99 37.31 0.26 0.75 16 29 O -0.36 -5.76 9.24 -35.23 -0.33 -6.09 16 30 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.52 6.41 -51.93 -0.33 0.19 16 33 H 0.39 10.58 7.58 -40.82 -0.31 10.27 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 36 H 0.08 1.08 6.26 -51.93 -0.33 0.76 16 37 H 0.10 0.33 8.02 -51.93 -0.42 -0.08 16 38 H 0.10 0.45 7.66 -51.93 -0.40 0.05 16 39 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.10 0.10 8.09 -51.93 -0.42 -0.32 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.22 0.41 8.06 -52.49 -0.42 -0.02 16 44 H 0.22 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.43 6.06 -51.93 -0.31 0.11 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -37.89 392.23 -9.57 -47.46 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.47 Total: 5.84 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.64 Total: 2.89 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.11 Total: -65.00 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.24 Total: -14.60 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.89 -9.57 -47.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.632 kcal (2) G-P(sol) polarization free energy of solvation -37.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds