Wall clock time and date at job start Tue Mar 31 2020 19:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47228 * 90.00169 * 9 7 5 11 11 H 1.48497 * 109.47353 * 210.00332 * 9 7 5 12 12 H 1.48512 * 109.47060 * 330.00232 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.08994 * 109.51721 * 175.09902 * 13 2 1 15 15 C 1.53295 * 109.51403 * 295.25837 * 13 2 1 16 16 N 1.47156 * 108.38515 * 172.22339 * 15 13 2 17 17 C 1.34773 * 120.98167 * 129.48720 * 16 15 13 18 18 O 1.21283 * 120.00041 * 359.97423 * 17 16 15 19 19 C 1.50696 * 120.00024 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47398 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47610 * 180.02562 * 20 19 17 22 22 N 1.46493 * 109.47354 * 180.02562 * 21 20 19 23 23 C 1.34429 * 126.82336 * 125.00761 * 22 21 20 24 24 N 1.30829 * 108.08073 * 179.97438 * 23 22 21 25 25 C 1.33245 * 109.82696 * 359.97438 * 24 23 22 26 26 N 1.30710 * 108.94865 * 359.75041 * 25 24 23 27 27 C 1.47146 * 118.03490 * 309.46016 * 16 15 13 28 28 C 1.53299 * 108.38486 * 50.54054 * 27 16 15 29 29 O 1.42963 * 109.21803 * 307.69293 * 28 27 16 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 34 34 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.68153 * 291.94415 * 15 13 2 36 36 H 1.09000 * 109.68537 * 52.50104 * 15 13 2 37 37 H 1.08997 * 109.47726 * 299.99925 * 19 17 16 38 38 H 1.09001 * 109.47287 * 60.00001 * 19 17 16 39 39 H 1.09005 * 109.47035 * 300.00108 * 20 19 17 40 40 H 1.09000 * 109.47152 * 60.00185 * 20 19 17 41 41 H 1.08997 * 109.47046 * 300.00366 * 21 20 19 42 42 H 1.09000 * 109.46798 * 59.99863 * 21 20 19 43 43 H 1.07999 * 125.95960 * 359.91476 * 23 22 21 44 44 H 1.07995 * 125.52910 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.68473 * 290.81409 * 27 16 15 46 46 H 1.09001 * 109.71528 * 170.27683 * 27 16 15 47 47 H 1.09005 * 109.51397 * 187.77787 * 28 27 16 48 48 H 1.08995 * 109.55419 * 67.64371 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 4.1537 0.8554 -5.2021 11 1 2.5816 -0.6611 -6.2554 12 1 1.7813 1.3573 -5.1753 13 6 2.0400 -0.7212 1.2493 14 1 3.1264 -0.7982 1.2072 15 6 1.6295 0.0665 2.4987 16 7 1.9647 -0.7372 3.6849 17 6 2.6672 -0.2076 4.7058 18 8 3.0334 0.9476 4.6551 19 6 2.9979 -1.0506 5.9104 20 6 3.7958 -0.2156 6.9138 21 6 4.1321 -1.0717 8.1366 22 7 4.8956 -0.2720 9.0976 23 6 4.5947 -0.0631 10.3910 24 7 5.5223 0.7030 10.9051 25 6 6.4283 1.0019 9.9750 26 7 6.0911 0.4232 8.8525 27 6 1.5097 -2.1360 3.7238 28 6 1.9262 -2.8164 2.4147 29 8 1.4705 -2.0311 1.3104 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 -1.1525 34 1 3.2490 -2.3961 -4.2418 35 1 2.1708 1.0120 2.5309 36 1 0.5566 0.2577 2.4761 37 1 2.0751 -1.3956 6.3769 38 1 3.5917 -1.9104 5.6002 39 1 4.7187 0.1290 6.4472 40 1 3.2024 0.6444 7.2241 41 1 3.2095 -1.4167 8.6033 42 1 4.7257 -1.9315 7.8259 43 1 3.7363 -0.4579 10.9142 44 1 7.3022 1.6183 10.1253 45 1 0.4248 -2.1666 3.8245 46 1 1.9712 -2.6495 4.5673 47 1 1.4808 -3.8100 2.3631 48 1 3.0121 -2.9018 2.3773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330422786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:38 Heat of formation + Delta-G solvation = 1.879633 kcal Electronic energy + Delta-G solvation = -28924.919088 eV Core-core repulsion = 24823.528134 eV Total energy + Delta-G solvation = -4101.390954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94514 -41.49523 -39.72740 -37.13261 -36.52956 -35.73883 -34.36685 -33.23013 -32.14958 -31.84216 -29.96141 -29.19328 -27.66330 -26.37563 -24.96735 -24.25464 -23.24705 -22.86068 -22.01911 -21.19048 -20.12339 -19.31523 -18.53944 -17.96346 -17.58525 -17.18865 -16.96189 -16.63803 -16.53584 -16.06064 -15.94659 -15.83478 -15.42318 -15.23539 -15.06744 -14.89155 -14.39686 -14.30790 -14.01354 -13.81664 -13.55175 -13.34517 -13.28806 -13.02189 -12.84848 -12.64154 -12.58472 -12.44582 -12.35767 -12.19316 -11.85043 -11.83520 -11.65439 -11.56876 -11.17529 -10.98942 -10.94497 -10.84084 -10.78539 -10.58487 -9.58546 -9.01996 -7.93770 -5.22359 0.73520 1.45779 1.46501 1.47828 1.55510 1.56346 1.86832 2.03424 2.55389 2.80358 3.34311 3.40011 3.55943 3.57556 3.61284 3.85759 3.91971 3.96481 4.01859 4.08322 4.13710 4.18484 4.28690 4.35058 4.39551 4.42231 4.48205 4.56344 4.61006 4.63423 4.64116 4.84206 4.87162 4.97958 4.99418 5.08172 5.19546 5.23629 5.32545 5.33321 5.48258 5.50104 5.60803 5.99362 6.26082 6.28514 6.34062 7.08787 7.14860 7.34241 8.09767 8.34803 9.29620 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.001901 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.633102 B =14724.673432 C =15245.196724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.054 0.946 4 N -0.732 5.732 5 C -0.240 4.240 6 H 0.075 0.925 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.269 1.269 13 C 0.093 3.907 14 H 0.036 0.964 15 C 0.092 3.908 16 N -0.616 5.616 17 C 0.505 3.495 18 O -0.593 6.593 19 C -0.124 4.124 20 C -0.109 4.109 21 C 0.128 3.872 22 N -0.383 5.383 23 C 0.260 3.740 24 N -0.584 5.584 25 C 0.187 3.813 26 N -0.359 5.359 27 C 0.076 3.924 28 C 0.032 3.968 29 O -0.384 6.384 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.266 0.734 44 H 0.232 0.768 45 H 0.095 0.905 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -4.641 30.637 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 H 0.072 0.928 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.194 1.194 13 C 0.033 3.967 14 H 0.054 0.946 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.296 3.704 18 O -0.473 6.473 19 C -0.164 4.164 20 C -0.148 4.148 21 C 0.008 3.992 22 N -0.174 5.174 23 C -0.035 4.035 24 N -0.312 5.312 25 C -0.116 4.116 26 N -0.187 5.187 27 C -0.046 4.046 28 C -0.045 4.045 29 O -0.302 6.302 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.172 0.828 42 H 0.123 0.877 43 H 0.281 0.719 44 H 0.248 0.752 45 H 0.114 0.886 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.178 -3.855 29.972 30.385 hybrid contribution 0.608 0.366 -1.426 1.593 sum -2.569 -3.488 28.546 28.873 Atomic orbital electron populations 1.22196 0.96752 1.01256 1.00415 1.20438 0.94015 0.94370 0.84679 0.92846 1.42509 1.78323 1.10449 1.05940 1.19643 1.34999 0.94177 0.88391 0.90664 1.25550 1.03003 0.96921 1.01431 1.69831 1.52540 1.10174 1.29351 0.85158 0.77800 0.77459 0.79448 1.21612 1.22148 1.19434 1.22495 0.95722 0.84002 0.94448 0.94638 1.22154 1.02046 0.95025 0.83989 1.48342 1.54773 1.13858 1.17944 1.21574 0.76129 0.87784 0.84940 1.90718 1.54672 1.20744 1.81214 1.21666 1.04400 0.98664 0.91682 1.21435 1.00067 0.98362 0.94913 1.22190 0.97041 0.91988 0.87998 1.50756 1.17818 1.38136 1.10676 1.27002 0.99680 0.93981 0.82879 1.70537 1.06237 1.20150 1.34282 1.26464 1.00228 0.99038 0.85866 1.78028 1.00592 1.15092 1.25005 1.22759 1.02289 0.79584 0.99921 1.23282 0.99459 0.96056 0.85665 1.88056 1.67919 1.25462 1.48798 0.93284 0.94567 0.91171 0.79238 0.94113 0.90223 0.89042 0.83831 0.85565 0.93705 0.92582 0.82838 0.87728 0.71859 0.75166 0.88639 0.84347 0.85246 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.06 71.98 0.65 -4.61 16 2 C 0.17 7.05 2.77 44.99 0.12 7.17 16 3 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 4 N -0.73 -38.05 5.10 -322.94 -1.65 -39.70 16 5 C -0.24 -13.64 9.93 84.03 0.83 -12.81 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 8 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 9 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.09 3.15 2.61 30.69 0.08 3.23 16 14 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 15 C 0.09 2.53 5.82 86.35 0.50 3.04 16 16 N -0.62 -12.87 3.02 -817.35 -2.47 -15.34 16 17 C 0.50 10.90 7.71 87.66 0.68 11.57 16 18 O -0.59 -19.40 15.45 -3.04 -0.05 -19.44 16 19 C -0.12 -1.06 4.07 29.85 0.12 -0.94 16 20 C -0.11 -1.41 4.72 30.59 0.14 -1.27 16 21 C 0.13 0.70 6.55 86.38 0.57 1.26 16 22 N -0.38 -5.18 3.69 -352.08 -1.30 -6.48 16 23 C 0.26 2.82 12.63 180.36 2.28 5.10 16 24 N -0.58 -10.48 11.19 -204.01 -2.28 -12.76 16 25 C 0.19 3.50 13.03 180.76 2.36 5.86 16 26 N -0.36 -7.62 12.58 -61.25 -0.77 -8.39 16 27 C 0.08 0.94 6.54 86.36 0.56 1.51 16 28 C 0.03 0.64 6.99 72.08 0.50 1.14 16 29 O -0.38 -12.14 9.24 -148.98 -1.38 -13.52 16 30 H 0.05 1.83 7.56 -2.39 -0.02 1.82 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.99 6.41 -2.38 -0.02 1.98 16 33 H 0.38 21.21 7.58 -92.71 -0.70 20.51 16 34 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 35 H 0.08 2.52 7.08 -2.38 -0.02 2.50 16 36 H 0.09 2.30 6.26 -2.39 -0.01 2.29 16 37 H 0.14 -0.01 8.02 -2.39 -0.02 -0.03 16 38 H 0.13 0.47 7.66 -2.39 -0.02 0.45 16 39 H 0.04 0.98 8.10 -2.38 -0.02 0.96 16 40 H 0.06 0.96 8.10 -2.39 -0.02 0.95 16 41 H 0.15 -0.69 8.09 -2.39 -0.02 -0.71 16 42 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.27 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.14 0.40 6.06 -2.39 -0.01 0.39 16 47 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -90.13 392.23 2.55 -87.58 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.27 Total: 22.82 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 9.87 Total: 16.22 kcal Atomic # 7 Polarization: -134.55 SS G_CDS: -8.19 Total: -142.73 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.42 Total: -32.96 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -90.13 2.55 -87.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.456 kcal (2) G-P(sol) polarization free energy of solvation -90.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds