Wall clock time and date at job start Tue Mar 31 2020 19:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47296 * 2 1 4 4 N 1.46498 * 109.47526 * 240.00081 * 2 1 3 5 5 C 1.36937 * 120.00327 * 85.00013 * 4 2 1 6 6 H 1.08001 * 119.99200 * 0.02562 * 5 4 2 7 7 C 1.38802 * 120.00212 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00376 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46984 * 89.99696 * 9 7 5 11 11 H 1.48494 * 109.47183 * 209.99965 * 9 7 5 12 12 H 1.48494 * 109.46851 * 330.00197 * 9 7 5 13 13 C 1.53008 * 109.46888 * 119.99851 * 2 1 3 14 14 H 1.08994 * 109.51365 * 300.10622 * 13 2 1 15 15 C 1.53293 * 109.51266 * 179.97438 * 13 2 1 16 16 N 1.47144 * 108.38635 * 187.72417 * 15 13 2 17 17 C 1.34779 * 120.98310 * 230.51392 * 16 15 13 18 18 O 1.21273 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99767 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.46735 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47060 * 180.02562 * 20 19 17 22 22 N 1.46500 * 109.47473 * 180.02562 * 21 20 19 23 23 C 1.34432 * 126.82486 * 124.70718 * 22 21 20 24 24 N 1.30828 * 108.08020 * 179.89762 * 23 22 21 25 25 C 1.33243 * 109.82701 * 0.38275 * 24 23 22 26 26 N 1.30716 * 108.94395 * 359.76073 * 25 24 23 27 27 C 1.47152 * 118.03550 * 50.79005 * 16 15 13 28 28 C 1.53714 * 108.15995 * 309.15875 * 27 16 15 29 29 O 1.42960 * 109.55039 * 60.23311 * 13 2 1 30 30 H 1.09004 * 109.47013 * 60.00452 * 1 2 3 31 31 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47509 * 299.99919 * 1 2 3 33 33 H 0.97000 * 119.99846 * 265.00264 * 4 2 1 34 34 H 0.96997 * 120.00513 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.67726 * 68.00156 * 15 13 2 36 36 H 1.08997 * 109.71286 * 307.47147 * 15 13 2 37 37 H 1.09001 * 109.46797 * 60.00350 * 19 17 16 38 38 H 1.08992 * 109.47518 * 300.00347 * 19 17 16 39 39 H 1.09002 * 109.47398 * 300.00410 * 20 19 17 40 40 H 1.09001 * 109.47194 * 60.00591 * 20 19 17 41 41 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 42 42 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 43 43 H 1.08003 * 125.95564 * 0.04530 * 23 22 21 44 44 H 1.08001 * 125.52890 * 179.80297 * 25 24 23 45 45 H 1.09001 * 109.68725 * 68.93396 * 27 16 15 46 46 H 1.09000 * 109.68597 * 189.49249 * 27 16 15 47 47 H 1.09005 * 109.65659 * 292.57224 * 28 27 16 48 48 H 1.09002 * 109.48381 * 172.40065 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8928 1.0405 -2.4240 7 6 2.6115 -0.6619 -3.5091 8 7 2.9246 -1.9389 -3.4501 9 14 2.7894 0.2698 -5.1185 10 1 4.1516 0.8549 -5.2038 11 1 2.5786 -0.6617 -6.2556 12 1 1.7793 1.3568 -5.1752 13 6 2.0400 -0.7213 1.2493 14 1 1.6755 -0.2091 2.1397 15 6 3.5729 -0.7224 1.2500 16 7 4.0359 -1.5769 2.3548 17 6 4.9519 -1.1331 3.2383 18 8 5.4069 -0.0142 3.1296 19 6 5.4100 -2.0270 4.3619 20 6 6.4434 -1.2868 5.2133 21 6 6.9090 -2.1944 6.3537 22 7 7.8981 -1.4855 7.1694 23 6 7.8453 -1.2728 8.4957 24 7 8.9160 -0.6061 8.8429 25 6 9.6685 -0.3686 7.7693 26 7 9.0869 -0.8878 6.7201 27 6 3.4738 -2.9326 2.4630 28 6 1.9417 -2.8219 2.4064 29 8 1.5688 -2.0710 1.2483 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2491 -1.6317 -1.1526 34 1 3.2473 -2.3964 -4.2422 35 1 3.9406 0.2937 1.3929 36 1 3.9407 -1.1160 0.3025 37 1 5.8592 -2.9297 3.9479 38 1 4.5556 -2.2978 4.9821 39 1 7.2979 -1.0155 4.5933 40 1 5.9939 -0.3843 5.6273 41 1 6.0547 -2.4660 6.9737 42 1 7.3587 -3.0968 5.9394 43 1 7.0576 -1.5980 9.1592 44 1 10.6072 0.1655 7.7665 45 1 3.8312 -3.5454 1.6355 46 1 3.7759 -3.3808 3.4096 47 1 1.5772 -2.3170 3.3010 48 1 1.5070 -3.8198 2.3488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330422788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:41 Heat of formation + Delta-G solvation = 2.382169 kcal Electronic energy + Delta-G solvation = -29188.932754 eV Core-core repulsion = 25087.563591 eV Total energy + Delta-G solvation = -4101.369163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.94615 -41.45529 -39.69505 -37.09268 -36.52942 -35.75480 -34.18999 -33.23759 -32.14834 -31.62582 -30.14988 -29.34164 -27.78039 -25.91355 -25.04020 -24.24508 -23.18324 -22.85643 -22.00227 -21.24953 -20.10980 -19.32995 -18.54866 -17.96075 -17.55661 -17.25653 -16.79453 -16.62221 -16.46855 -16.06811 -15.97253 -15.73048 -15.40101 -15.12291 -15.03602 -14.85365 -14.56182 -14.24142 -13.99949 -13.77307 -13.46050 -13.35060 -13.22186 -13.04433 -12.78143 -12.62127 -12.57464 -12.50517 -12.47225 -12.18468 -11.85444 -11.78762 -11.69168 -11.50887 -11.08903 -10.98889 -10.95674 -10.82982 -10.78240 -10.58339 -9.58052 -8.95708 -7.91396 -5.18224 0.73598 1.46246 1.46490 1.47504 1.55395 1.57099 1.88937 2.03458 2.56393 2.83354 3.35155 3.42372 3.55899 3.59825 3.71612 3.85111 3.93848 3.98327 4.00948 4.10892 4.14620 4.22147 4.25101 4.32390 4.38810 4.45193 4.51987 4.55710 4.62918 4.63944 4.81381 4.86126 4.89444 4.98212 5.04487 5.09074 5.19170 5.21874 5.32727 5.35126 5.48441 5.52420 5.60178 5.99336 6.27970 6.34198 6.37737 7.10232 7.14845 7.37781 8.14099 8.39560 9.31754 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.002130 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.604441 B =13144.774265 C =13954.256293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.170 3.830 3 H 0.054 0.946 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.073 0.927 7 C -0.076 4.076 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.270 1.270 13 C 0.097 3.903 14 H 0.077 0.923 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.503 3.497 18 O -0.596 6.596 19 C -0.123 4.123 20 C -0.108 4.108 21 C 0.129 3.871 22 N -0.383 5.383 23 C 0.261 3.739 24 N -0.584 5.584 25 C 0.187 3.813 26 N -0.359 5.359 27 C 0.069 3.931 28 C 0.039 3.961 29 O -0.387 6.387 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.155 0.845 42 H 0.105 0.895 43 H 0.266 0.734 44 H 0.233 0.767 45 H 0.068 0.932 46 H 0.144 0.856 47 H 0.072 0.928 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -6.891 27.672 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.061 3.939 3 H 0.072 0.928 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.091 0.909 7 C -0.268 4.268 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.219 1.219 11 H -0.223 1.223 12 H -0.195 1.195 13 C 0.037 3.963 14 H 0.095 0.905 15 C -0.030 4.030 16 N -0.347 5.347 17 C 0.294 3.706 18 O -0.477 6.477 19 C -0.162 4.162 20 C -0.147 4.147 21 C 0.009 3.991 22 N -0.174 5.174 23 C -0.035 4.035 24 N -0.312 5.312 25 C -0.116 4.116 26 N -0.188 5.188 27 C -0.053 4.053 28 C -0.038 4.038 29 O -0.305 6.305 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.172 0.828 42 H 0.123 0.877 43 H 0.282 0.718 44 H 0.249 0.751 45 H 0.087 0.913 46 H 0.162 0.838 47 H 0.090 0.910 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.700 -6.165 26.901 27.731 hybrid contribution 0.464 0.475 -1.535 1.672 sum 3.164 -5.690 25.367 26.189 Atomic orbital electron populations 1.22162 0.96883 1.01187 1.00486 1.20521 0.93777 0.94516 0.85070 0.92776 1.42466 1.77990 1.10473 1.05678 1.19610 1.34582 0.94046 0.88458 0.90858 1.25465 1.03313 0.96860 1.01158 1.69816 1.52737 1.10021 1.29141 0.85231 0.77652 0.77513 0.79930 1.21926 1.22294 1.19535 1.22541 0.91278 0.84117 0.98340 0.90541 1.21981 0.95595 0.95924 0.89537 1.48362 1.42031 1.16310 1.27994 1.21640 0.77640 0.87807 0.83555 1.90705 1.57558 1.23536 1.75853 1.21660 1.01579 0.98549 0.94441 1.21432 0.98365 0.98511 0.96425 1.22184 0.90235 0.93750 0.92956 1.50754 1.16826 1.41752 1.08057 1.27009 0.98079 0.93809 0.84625 1.70535 1.06645 1.22047 1.31939 1.26470 1.01321 0.98717 0.85089 1.78027 0.97860 1.17998 1.24896 1.22867 0.94940 0.81866 1.05616 1.23352 0.93518 0.98335 0.88586 1.88066 1.75639 1.23289 1.43537 0.94467 0.93415 0.91377 0.78933 0.94265 0.90865 0.92805 0.85620 0.83758 0.93766 0.92603 0.82768 0.87686 0.71830 0.75132 0.91328 0.83804 0.91003 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.35 71.98 0.67 -4.57 16 2 C 0.17 6.73 2.73 44.99 0.12 6.86 16 3 H 0.05 2.18 8.08 -2.39 -0.02 2.16 16 4 N -0.73 -36.50 4.29 -322.94 -1.39 -37.89 16 5 C -0.23 -13.12 9.93 84.03 0.83 -12.29 16 6 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 8 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.10 3.14 2.53 30.70 0.08 3.22 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.09 3.29 5.86 86.35 0.51 3.80 16 16 N -0.61 -15.84 3.01 -816.55 -2.46 -18.30 16 17 C 0.50 12.70 7.71 87.66 0.68 13.37 16 18 O -0.60 -21.75 15.45 -3.01 -0.05 -21.80 16 19 C -0.12 -1.34 4.07 29.85 0.12 -1.22 16 20 C -0.11 -1.61 4.71 30.59 0.14 -1.46 16 21 C 0.13 0.86 6.55 86.38 0.57 1.43 16 22 N -0.38 -5.57 3.69 -352.06 -1.30 -6.87 16 23 C 0.26 3.04 12.63 180.36 2.28 5.32 16 24 N -0.58 -10.89 11.19 -204.00 -2.28 -13.17 16 25 C 0.19 3.65 13.03 180.76 2.36 6.00 16 26 N -0.36 -7.99 12.57 -61.24 -0.77 -8.76 16 27 C 0.07 1.16 6.57 86.50 0.57 1.72 16 28 C 0.04 0.71 7.00 72.22 0.51 1.22 16 29 O -0.39 -11.96 9.23 -148.98 -1.37 -13.33 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.38 20.69 7.21 -92.71 -0.67 20.02 16 34 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.07 2.84 7.08 -2.39 -0.02 2.83 16 36 H 0.05 2.35 7.28 -2.39 -0.02 2.33 16 37 H 0.13 0.79 8.00 -2.39 -0.02 0.77 16 38 H 0.14 0.26 7.67 -2.39 -0.02 0.24 16 39 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.15 -0.52 8.09 -2.39 -0.02 -0.54 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.27 -0.04 8.06 -2.91 -0.02 -0.06 16 44 H 0.23 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.14 0.79 6.05 -2.39 -0.01 0.78 16 47 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.13 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -89.29 394.12 2.88 -86.41 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.29 Total: 24.45 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 9.89 Total: 19.45 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -7.92 Total: -144.32 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.42 Total: -35.13 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -89.29 2.88 -86.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330422788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.791 kcal (2) G-P(sol) polarization free energy of solvation -89.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds