Wall clock time and date at job start Tue Mar 31 2020 19:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47380 * 2 1 4 4 N 1.46504 * 109.47143 * 239.99955 * 2 1 3 5 5 C 1.36940 * 119.99939 * 85.00096 * 4 2 1 6 6 H 1.07991 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00101 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99838 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00193 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47078 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47326 * 120.00086 * 9 7 5 12 12 H 1.48503 * 109.47147 * 240.00039 * 9 7 5 13 13 C 1.52996 * 109.47113 * 120.00268 * 2 1 3 14 14 H 1.08998 * 109.51205 * 299.89652 * 13 2 1 15 15 C 1.53299 * 109.55733 * 179.77098 * 13 2 1 16 16 N 1.47152 * 108.38544 * 187.74872 * 15 13 2 17 17 C 1.34773 * 120.98149 * 230.51326 * 16 15 13 18 18 O 1.21289 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00213 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47146 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46989 * 180.02562 * 20 19 17 22 22 C 1.35350 * 126.75276 * 125.00152 * 21 20 19 23 23 N 1.35306 * 106.17583 * 179.97438 * 22 21 20 24 24 C 1.46504 * 125.87177 * 179.97438 * 23 22 21 25 25 N 1.28717 * 108.26505 * 0.02562 * 23 22 21 26 26 N 1.28636 * 110.17304 * 359.71839 * 25 23 22 27 27 C 1.47263 * 118.06134 * 50.53095 * 16 15 13 28 28 C 1.53300 * 108.32670 * 309.49293 * 27 16 15 29 29 O 1.42961 * 109.26618 * 52.28303 * 28 27 16 30 30 H 1.09010 * 109.47107 * 60.00118 * 1 2 3 31 31 H 1.08991 * 109.47701 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47442 * 300.00299 * 1 2 3 33 33 H 0.97000 * 119.99853 * 265.00714 * 4 2 1 34 34 H 0.96999 * 120.00241 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.67859 * 307.47062 * 15 13 2 36 36 H 1.08993 * 109.68127 * 68.02378 * 15 13 2 37 37 H 1.09000 * 109.46852 * 300.00096 * 19 17 16 38 38 H 1.09003 * 109.46363 * 59.99848 * 19 17 16 39 39 H 1.08998 * 109.47147 * 300.00320 * 20 19 17 40 40 H 1.09002 * 109.47216 * 59.99772 * 20 19 17 41 41 H 1.08001 * 126.91167 * 359.96346 * 22 21 20 42 42 H 1.09004 * 109.46727 * 89.99766 * 24 23 22 43 43 H 1.08992 * 109.47379 * 210.00293 * 24 23 22 44 44 H 1.08995 * 109.46964 * 330.00403 * 24 23 22 45 45 H 1.08995 * 109.74687 * 189.76839 * 27 16 15 46 46 H 1.09004 * 109.67476 * 69.17490 * 27 16 15 47 47 H 1.09002 * 109.51290 * 292.33299 * 28 27 16 48 48 H 1.08997 * 109.51158 * 172.23397 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8927 1.0404 -2.4242 7 6 2.6113 -0.6620 -3.5093 8 7 2.9234 -1.9393 -3.4505 9 14 2.7905 0.2701 -5.1182 10 1 2.3765 1.6825 -4.9208 11 1 4.2073 0.2262 -5.5607 12 1 1.9293 -0.3577 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 1.6785 -0.2070 2.1396 15 6 3.5729 -0.7274 1.2483 16 7 4.0343 -1.5828 2.3533 17 6 4.9526 -1.1414 3.2354 18 8 5.4119 -0.0242 3.1249 19 6 5.4090 -2.0358 4.3592 20 6 6.4467 -1.2989 5.2083 21 6 6.9035 -2.1936 6.3316 22 6 8.1785 -2.5439 6.6206 23 7 8.1110 -3.3527 7.7032 24 6 9.2498 -3.9804 8.3782 25 7 6.8742 -3.4768 8.0376 26 7 6.1290 -2.7933 7.2426 27 6 3.4635 -2.9355 2.4670 28 6 1.9360 -2.8207 2.4080 29 8 1.5638 -2.0693 1.2501 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2489 -1.6318 -1.1526 34 1 3.2460 -2.3967 -4.2426 35 1 3.9379 -1.1234 0.3006 36 1 3.9442 0.2875 1.3900 37 1 4.5543 -2.3034 4.9805 38 1 5.8547 -2.9404 3.9453 39 1 7.3012 -1.0317 4.5866 40 1 6.0013 -0.3941 5.6220 41 1 9.0703 -2.2393 6.0931 42 1 9.6177 -3.3181 9.1619 43 1 8.9345 -4.9258 8.8196 44 1 10.0444 -4.1642 7.6552 45 1 3.7617 -3.3825 3.4153 46 1 3.8173 -3.5537 1.6419 47 1 1.5741 -2.3140 3.3026 48 1 1.4979 -3.8172 2.3517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:14 Heat of formation + Delta-G solvation = 36.393549 kcal Electronic energy + Delta-G solvation = -29322.368162 eV Core-core repulsion = 25222.473843 eV Total energy + Delta-G solvation = -4099.894319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57446 -40.21796 -38.37726 -35.49856 -35.43631 -34.41673 -33.75094 -32.25875 -30.75059 -30.00445 -28.39079 -28.34662 -27.62204 -25.28427 -23.87770 -23.42616 -22.43364 -22.20404 -21.08610 -19.67187 -18.89164 -17.70946 -17.31079 -17.01426 -16.93741 -16.21157 -15.89795 -15.57365 -15.23279 -14.82400 -14.63311 -14.37002 -14.27823 -14.02021 -13.69833 -13.59688 -13.31142 -13.15445 -12.84937 -12.71559 -12.56462 -12.28562 -11.90545 -11.84890 -11.68726 -11.55200 -11.30743 -11.12049 -10.94382 -10.81860 -10.74736 -10.42711 -10.39738 -10.23097 -9.97689 -9.82294 -9.62310 -9.53327 -9.41421 -8.88898 -8.29329 -6.88269 -5.70458 -2.98480 1.23529 1.97839 2.20522 2.71828 3.03597 3.47059 3.53042 3.54894 3.91238 4.05070 4.16051 4.37912 4.43217 4.63960 4.65187 4.72366 4.74174 4.89415 4.93362 5.05783 5.10728 5.19671 5.29170 5.39628 5.41832 5.46991 5.56951 5.66059 5.73297 5.77584 5.83995 5.88259 5.92690 5.99080 6.07426 6.17753 6.26883 6.42625 6.46886 6.63393 6.71983 6.83223 7.18465 7.49361 7.54393 7.76576 8.18195 8.25151 8.47975 9.60257 10.17846 10.55222 11.51919 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002183 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.324869 B =12824.703745 C =13444.712214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.612 5.612 17 C 0.515 3.485 18 O -0.544 6.544 19 C -0.132 4.132 20 C -0.016 4.016 21 C -0.015 4.015 22 C -0.048 4.048 23 N -0.297 5.297 24 C 0.081 3.919 25 N -0.088 5.088 26 N -0.264 5.264 27 C 0.071 3.929 28 C 0.048 3.952 29 O -0.359 6.359 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.390 0.610 34 H 0.253 0.747 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.192 0.808 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 -5.424 23.993 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.036 4.036 16 N -0.346 5.346 17 C 0.303 3.697 18 O -0.422 6.422 19 C -0.172 4.172 20 C -0.056 4.056 21 C -0.154 4.154 22 C -0.199 4.199 23 N -0.090 5.090 24 C -0.060 4.060 25 N -0.068 5.068 26 N -0.131 5.131 27 C -0.053 4.053 28 C -0.031 4.031 29 O -0.277 6.277 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.225 0.775 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.209 0.791 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.264 -5.444 24.662 27.261 hybrid contribution 1.267 0.423 -1.357 1.904 sum 11.531 -5.020 23.304 26.481 Atomic orbital electron populations 1.22347 0.98542 1.01550 0.99599 1.20263 0.92736 0.94652 0.85225 0.92250 1.42393 1.77635 1.11012 1.04899 1.19297 1.36209 0.93825 0.87412 0.91159 1.24720 1.02376 0.95940 0.97943 1.69684 1.51035 1.08576 1.28592 0.86152 0.77201 0.78819 0.84234 1.20601 1.22008 1.22027 1.22914 0.92329 0.83391 0.99498 0.92775 1.22422 0.94867 0.96563 0.89778 1.48265 1.41565 1.15626 1.29162 1.20590 0.78774 0.87683 0.82649 1.90693 1.56234 1.20780 1.74514 1.21597 1.00734 0.99090 0.95824 1.19614 0.99206 0.95555 0.91200 1.22064 0.90027 1.03280 0.99980 1.23443 1.01435 1.00844 0.94143 1.47238 1.08079 1.32549 1.21156 1.22269 0.85101 0.99879 0.98738 1.78318 0.86970 1.20005 1.21462 1.75051 1.26208 1.08542 1.03286 1.22514 0.95424 0.84057 1.03282 1.22880 0.93030 0.97559 0.89581 1.88106 1.75133 1.23721 1.40714 0.92801 0.92553 0.94860 0.77527 0.93706 0.88557 0.88628 0.88192 0.88991 0.89214 0.89185 0.79138 0.89075 0.88011 0.88239 0.89214 0.90030 0.93228 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.35 37.16 0.35 -2.67 16 2 C 0.18 3.67 2.74 -67.93 -0.19 3.48 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.82 4.29 -53.43 -0.23 -18.05 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C 0.08 1.35 2.53 -26.58 -0.07 1.29 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.52 5.87 -3.53 -0.02 1.49 16 16 N -0.61 -9.04 3.02 -172.18 -0.52 -9.56 16 17 C 0.51 7.40 7.71 -10.98 -0.08 7.32 16 18 O -0.54 -9.62 15.45 5.55 0.09 -9.54 16 19 C -0.13 -1.39 4.05 -27.88 -0.11 -1.50 16 20 C -0.02 -0.16 5.08 -27.89 -0.14 -0.30 16 21 C -0.02 -0.16 6.50 -82.78 -0.54 -0.69 16 22 C -0.05 -0.35 11.54 -17.05 -0.20 -0.55 16 23 N -0.30 -2.22 3.74 -68.06 -0.25 -2.48 16 24 C 0.08 0.18 11.39 59.85 0.68 0.86 16 25 N -0.09 -0.99 13.17 60.35 0.79 -0.19 16 26 N -0.26 -3.25 12.40 33.29 0.41 -2.84 16 27 C 0.07 0.84 6.55 -3.47 -0.02 0.82 16 28 C 0.05 0.60 6.98 37.31 0.26 0.86 16 29 O -0.36 -6.19 9.22 -35.23 -0.32 -6.51 16 30 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.39 10.47 7.20 -40.82 -0.29 10.17 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 2.01 7.26 -51.93 -0.38 1.63 16 36 H 0.10 1.77 7.08 -51.93 -0.37 1.40 16 37 H 0.10 1.00 7.66 -51.93 -0.40 0.60 16 38 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 39 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.09 0.99 8.10 -51.93 -0.42 0.56 16 41 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 45 H 0.09 0.80 6.06 -51.93 -0.31 0.49 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -36.25 393.62 -6.33 -42.58 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.60 Total: 7.25 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.33 Total: 3.25 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.93 Total: -60.49 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.24 Total: -16.05 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.25 -6.33 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.975 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds