Wall clock time and date at job start Tue Mar 31 2020 19:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.51531 * 64.90303 * 13 2 1 15 15 C 1.53303 * 109.50900 * 184.99705 * 13 2 1 16 16 N 1.47157 * 108.38134 * 172.22834 * 15 13 2 17 17 C 1.34774 * 120.97757 * 129.49142 * 16 15 13 18 18 O 1.21277 * 120.00366 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99622 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47194 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46941 * 180.02562 * 20 19 17 22 22 C 1.35343 * 126.75056 * 125.00779 * 21 20 19 23 23 N 1.35316 * 106.17669 * 179.97438 * 22 21 20 24 24 C 1.46495 * 125.87036 * 180.02562 * 23 22 21 25 25 N 1.28713 * 108.26091 * 359.97438 * 23 22 21 26 26 N 1.28641 * 110.18024 * 359.72953 * 25 23 22 27 27 C 1.47152 * 118.03641 * 309.46491 * 16 15 13 28 28 C 1.53294 * 108.38638 * 50.53734 * 27 16 15 29 29 O 1.42954 * 109.51813 * 304.74402 * 13 2 1 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 34 34 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.68521 * 291.95226 * 15 13 2 36 36 H 1.09003 * 109.68024 * 52.47220 * 15 13 2 37 37 H 1.09004 * 109.47432 * 299.99976 * 19 17 16 38 38 H 1.09005 * 109.46981 * 60.00061 * 19 17 16 39 39 H 1.08995 * 109.46885 * 300.00392 * 20 19 17 40 40 H 1.08998 * 109.46681 * 60.00015 * 20 19 17 41 41 H 1.08006 * 126.91682 * 0.02562 * 22 21 20 42 42 H 1.08997 * 109.47578 * 89.99407 * 24 23 22 43 43 H 1.09002 * 109.47123 * 209.99379 * 24 23 22 44 44 H 1.08998 * 109.47328 * 329.99435 * 24 23 22 45 45 H 1.08995 * 109.68150 * 170.26357 * 27 16 15 46 46 H 1.08999 * 109.68291 * 290.81345 * 27 16 15 47 47 H 1.09005 * 109.51115 * 67.61753 * 28 27 16 48 48 H 1.09002 * 109.51568 * 187.72201 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 1 1.7504 -0.1598 -2.1375 15 6 3.5678 -0.8318 -1.1889 16 7 4.0154 -1.6876 -2.2992 17 6 4.9965 -1.2870 -3.1319 18 8 5.5240 -0.2067 -2.9722 19 6 5.4380 -2.1815 -4.2615 20 6 6.5555 -1.4945 -5.0491 21 6 6.9965 -2.3888 -6.1791 22 6 7.0462 -2.0686 -7.4932 23 7 7.4996 -3.1713 -8.1330 24 6 7.7177 -3.2975 -9.5762 25 7 7.7074 -4.0899 -7.2557 26 7 7.4226 -3.6529 -6.0797 27 6 3.3605 -2.9939 -2.4730 28 6 1.8429 -2.7780 -2.4708 29 8 1.4751 -2.0332 -1.3073 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.2478 -2.3964 4.2420 35 1 4.0117 0.1588 -1.2870 36 1 3.8665 -1.2755 -0.2392 37 1 5.8053 -3.1243 -3.8562 38 1 4.5935 -2.3748 -4.9232 39 1 6.1878 -0.5519 -5.4544 40 1 7.3999 -1.3009 -4.3877 41 1 6.7786 -1.1228 -7.9410 42 1 8.7381 -2.9994 -9.8169 43 1 7.5609 -4.3331 -9.8781 44 1 7.0163 -2.6541 -10.1073 45 1 3.6672 -3.4349 -3.4214 46 1 3.6384 -3.6558 -1.6529 47 1 1.5525 -2.2247 -3.3640 48 1 1.3377 -3.7439 -2.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:16 Heat of formation + Delta-G solvation = 37.431293 kcal Electronic energy + Delta-G solvation = -29341.036346 eV Core-core repulsion = 25241.187027 eV Total energy + Delta-G solvation = -4099.849319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57058 -40.22160 -38.38669 -35.49607 -35.44580 -34.43190 -33.74645 -32.24565 -30.74396 -30.00069 -28.39607 -28.33456 -27.63681 -25.28605 -23.84495 -23.44623 -22.43264 -22.22655 -21.08864 -19.64907 -18.89698 -17.70932 -17.31476 -17.01812 -16.93090 -16.21743 -15.89558 -15.56081 -15.12561 -15.03083 -14.64631 -14.34295 -14.17555 -14.02841 -13.71336 -13.61158 -13.33029 -13.11883 -12.98294 -12.62227 -12.53372 -12.26660 -11.92749 -11.86248 -11.64616 -11.55296 -11.28352 -11.14299 -10.94859 -10.78538 -10.73874 -10.41309 -10.39151 -10.26398 -10.00574 -9.83037 -9.63089 -9.52677 -9.40588 -8.87224 -8.28649 -6.88279 -5.69452 -2.97893 1.23543 1.97847 2.21318 2.73005 3.04749 3.49196 3.53645 3.54392 3.90967 4.03453 4.15807 4.37926 4.42722 4.64184 4.64972 4.71712 4.74314 4.89471 4.94495 5.02217 5.10899 5.17537 5.31339 5.37944 5.42424 5.45616 5.56349 5.65931 5.73690 5.75614 5.85721 5.88692 5.93268 5.99641 6.07267 6.17849 6.26788 6.44309 6.46347 6.64860 6.72411 6.83459 7.18779 7.50292 7.53218 7.76038 8.19028 8.26464 8.48738 9.60767 10.17636 10.54579 11.52751 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002179 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.121155 B =12847.757634 C =13382.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.612 5.612 17 C 0.515 3.485 18 O -0.544 6.544 19 C -0.132 4.132 20 C -0.016 4.016 21 C -0.015 4.015 22 C -0.049 4.049 23 N -0.297 5.297 24 C 0.082 3.918 25 N -0.087 5.087 26 N -0.262 5.262 27 C 0.070 3.930 28 C 0.048 3.952 29 O -0.359 6.359 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.191 0.809 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -2.308 -28.990 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.346 5.346 17 C 0.303 3.697 18 O -0.422 6.422 19 C -0.172 4.172 20 C -0.056 4.056 21 C -0.153 4.153 22 C -0.200 4.200 23 N -0.091 5.091 24 C -0.060 4.060 25 N -0.067 5.067 26 N -0.129 5.129 27 C -0.053 4.053 28 C -0.030 4.030 29 O -0.277 6.277 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.208 0.792 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.428 -3.157 -28.418 29.103 hybrid contribution -0.049 1.177 0.240 1.202 sum 5.379 -1.980 -28.178 28.755 Atomic orbital electron populations 1.22328 0.98522 1.01578 0.99506 1.20262 0.92791 0.94622 0.85186 0.92266 1.42396 1.77674 1.10948 1.04944 1.19192 1.36619 0.93793 0.87419 0.91264 1.24722 1.02244 0.95929 0.97946 1.69658 1.50732 1.08592 1.28882 0.86296 0.77698 0.78609 0.83734 1.21388 1.21811 1.21318 1.22912 0.91747 0.84056 0.99398 0.92849 1.22437 0.94797 0.96690 0.89736 1.48243 1.36812 1.18908 1.30657 1.20582 0.79102 0.87133 0.82886 1.90692 1.55141 1.23074 1.73251 1.21601 0.99540 1.00030 0.96072 1.19617 0.98352 0.95158 0.92474 1.22072 1.04997 0.93840 0.94397 1.23426 1.08163 0.94890 0.93513 1.47244 1.42618 1.09328 1.09868 1.22263 1.04212 1.05995 0.73509 1.78331 1.20029 1.15446 0.92896 1.75082 1.14344 1.10012 1.13511 1.22489 0.94240 0.85371 1.03200 1.22877 0.93380 0.97409 0.89336 1.88106 1.70891 1.27167 1.41584 0.92848 0.94934 0.92485 0.77594 0.93548 0.88601 0.88372 0.88042 0.89164 0.89297 0.89082 0.79179 0.89080 0.88017 0.88273 0.89292 0.89922 0.93412 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.30 37.16 0.35 -2.63 16 2 C 0.18 3.65 2.80 -67.93 -0.19 3.46 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.83 4.24 -53.42 -0.23 -18.06 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 9 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.08 1.34 2.57 -26.58 -0.07 1.28 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.53 5.82 -3.53 -0.02 1.50 16 16 N -0.61 -9.10 3.02 -172.27 -0.52 -9.62 16 17 C 0.51 7.48 7.71 -10.99 -0.08 7.39 16 18 O -0.54 -9.72 15.45 5.56 0.09 -9.63 16 19 C -0.13 -1.40 4.05 -27.88 -0.11 -1.51 16 20 C -0.02 -0.17 5.08 -27.88 -0.14 -0.31 16 21 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 22 C -0.05 -0.36 11.54 -17.05 -0.20 -0.55 16 23 N -0.30 -2.21 3.74 -68.06 -0.25 -2.47 16 24 C 0.08 0.17 11.39 59.84 0.68 0.85 16 25 N -0.09 -0.99 13.16 60.35 0.79 -0.20 16 26 N -0.26 -3.31 12.40 33.29 0.41 -2.90 16 27 C 0.07 0.84 6.54 -3.53 -0.02 0.82 16 28 C 0.05 0.59 6.99 37.31 0.26 0.85 16 29 O -0.36 -6.09 9.24 -35.23 -0.33 -6.42 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.12 7.57 -51.93 -0.39 0.72 16 33 H 0.39 10.45 7.08 -40.82 -0.29 10.16 16 34 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.10 1.81 7.08 -51.93 -0.37 1.44 16 36 H 0.10 2.09 6.94 -51.93 -0.36 1.73 16 37 H 0.10 1.09 8.02 -51.93 -0.42 0.67 16 38 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 39 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.19 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 45 H 0.09 0.79 6.05 -51.93 -0.31 0.47 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -36.42 393.04 -6.32 -42.74 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.57 Total: 7.26 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.33 Total: 3.25 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.93 Total: -60.75 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.24 Total: -16.05 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.42 -6.32 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.170 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds