Wall clock time and date at job start Tue Mar 31 2020 19:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.51531 * 64.90303 * 13 2 1 15 15 C 1.53303 * 109.50900 * 184.99705 * 13 2 1 16 16 N 1.47157 * 108.38134 * 172.22834 * 15 13 2 17 17 C 1.34774 * 120.97757 * 129.49142 * 16 15 13 18 18 O 1.21277 * 120.00366 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99622 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47194 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46941 * 180.02562 * 20 19 17 22 22 C 1.35343 * 126.75056 * 125.00779 * 21 20 19 23 23 N 1.35316 * 106.17669 * 179.97438 * 22 21 20 24 24 C 1.46495 * 125.87036 * 180.02562 * 23 22 21 25 25 N 1.28713 * 108.26091 * 359.97438 * 23 22 21 26 26 N 1.28641 * 110.18024 * 359.72953 * 25 23 22 27 27 C 1.47152 * 118.03641 * 309.46491 * 16 15 13 28 28 C 1.53294 * 108.38638 * 50.53734 * 27 16 15 29 29 O 1.42954 * 109.51813 * 304.74402 * 13 2 1 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 34 34 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.68521 * 291.95226 * 15 13 2 36 36 H 1.09003 * 109.68024 * 52.47220 * 15 13 2 37 37 H 1.09004 * 109.47432 * 299.99976 * 19 17 16 38 38 H 1.09005 * 109.46981 * 60.00061 * 19 17 16 39 39 H 1.08995 * 109.46885 * 300.00392 * 20 19 17 40 40 H 1.08998 * 109.46681 * 60.00015 * 20 19 17 41 41 H 1.08006 * 126.91682 * 0.02562 * 22 21 20 42 42 H 1.08997 * 109.47578 * 89.99407 * 24 23 22 43 43 H 1.09002 * 109.47123 * 209.99379 * 24 23 22 44 44 H 1.08998 * 109.47328 * 329.99435 * 24 23 22 45 45 H 1.08995 * 109.68150 * 170.26357 * 27 16 15 46 46 H 1.08999 * 109.68291 * 290.81345 * 27 16 15 47 47 H 1.09005 * 109.51115 * 67.61753 * 28 27 16 48 48 H 1.09002 * 109.51568 * 187.72201 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 1 1.7504 -0.1598 -2.1375 15 6 3.5678 -0.8318 -1.1889 16 7 4.0154 -1.6876 -2.2992 17 6 4.9965 -1.2870 -3.1319 18 8 5.5240 -0.2067 -2.9722 19 6 5.4380 -2.1815 -4.2615 20 6 6.5555 -1.4945 -5.0491 21 6 6.9965 -2.3888 -6.1791 22 6 7.0462 -2.0686 -7.4932 23 7 7.4996 -3.1713 -8.1330 24 6 7.7177 -3.2975 -9.5762 25 7 7.7074 -4.0899 -7.2557 26 7 7.4226 -3.6529 -6.0797 27 6 3.3605 -2.9939 -2.4730 28 6 1.8429 -2.7780 -2.4708 29 8 1.4751 -2.0332 -1.3073 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.2478 -2.3964 4.2420 35 1 4.0117 0.1588 -1.2870 36 1 3.8665 -1.2755 -0.2392 37 1 5.8053 -3.1243 -3.8562 38 1 4.5935 -2.3748 -4.9232 39 1 6.1878 -0.5519 -5.4544 40 1 7.3999 -1.3009 -4.3877 41 1 6.7786 -1.1228 -7.9410 42 1 8.7381 -2.9994 -9.8169 43 1 7.5609 -4.3331 -9.8781 44 1 7.0163 -2.6541 -10.1073 45 1 3.6672 -3.4349 -3.4214 46 1 3.6384 -3.6558 -1.6529 47 1 1.5525 -2.2247 -3.3640 48 1 1.3377 -3.7439 -2.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330448012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:15 Heat of formation + Delta-G solvation = 10.603967 kcal Electronic energy + Delta-G solvation = -29342.199666 eV Core-core repulsion = 25241.187027 eV Total energy + Delta-G solvation = -4101.012639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.19888 -41.43050 -39.65402 -37.07750 -36.12256 -35.73144 -34.48996 -34.11076 -31.86280 -31.12394 -30.09807 -29.00466 -28.56596 -26.37701 -25.60787 -24.76282 -23.43428 -23.00042 -21.84806 -21.17328 -20.04810 -19.29039 -18.49771 -17.81420 -17.63370 -17.47125 -16.99321 -16.79663 -16.46439 -15.98153 -15.95446 -15.74223 -15.21544 -15.07535 -14.93940 -14.67825 -14.34798 -14.08680 -13.96362 -13.75915 -13.59503 -13.41521 -13.35009 -13.03471 -12.79121 -12.71004 -12.59436 -12.49366 -12.46039 -12.29118 -12.21211 -11.77026 -11.66304 -11.64538 -11.48238 -11.06548 -10.97711 -10.91636 -10.78049 -10.11923 -9.56173 -8.93371 -7.88504 -5.15669 0.66890 1.47102 1.48147 1.51064 1.56622 1.57908 1.60957 1.91124 2.59172 2.83974 3.28513 3.45344 3.57523 3.73503 3.76223 3.96508 4.00697 4.03198 4.05798 4.13408 4.20991 4.22496 4.31140 4.36443 4.37757 4.41554 4.53471 4.64113 4.66109 4.67241 4.77623 4.84155 4.85686 4.88930 5.01323 5.05886 5.12825 5.13834 5.23148 5.25499 5.37297 5.55158 5.64253 5.71663 6.29633 6.34603 6.37293 7.10252 7.39816 7.52438 8.16280 8.41012 9.34551 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002179 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.121155 B =12847.757634 C =13382.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.171 3.829 3 H 0.059 0.941 4 N -0.726 5.726 5 C -0.235 4.235 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.280 1.280 13 C 0.094 3.906 14 H 0.080 0.920 15 C 0.095 3.905 16 N -0.614 5.614 17 C 0.512 3.488 18 O -0.582 6.582 19 C -0.119 4.119 20 C -0.009 4.009 21 C -0.037 4.037 22 C -0.028 4.028 23 N -0.288 5.288 24 C 0.069 3.931 25 N -0.124 5.124 26 N -0.304 5.304 27 C 0.069 3.931 28 C 0.043 3.957 29 O -0.385 6.385 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.234 0.766 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -1.530 -32.414 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.077 0.923 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.207 1.207 13 C 0.035 3.965 14 H 0.097 0.903 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.302 3.698 18 O -0.463 6.463 19 C -0.159 4.159 20 C -0.049 4.049 21 C -0.177 4.177 22 C -0.180 4.180 23 N -0.082 5.082 24 C -0.070 4.070 25 N -0.104 5.104 26 N -0.171 5.171 27 C -0.053 4.053 28 C -0.034 4.034 29 O -0.304 6.304 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.209 0.791 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.454 -2.390 -31.907 32.304 hybrid contribution 0.263 0.962 1.116 1.497 sum 4.717 -1.428 -30.791 31.182 Atomic orbital electron populations 1.22140 0.96914 1.01111 1.00457 1.20528 0.93775 0.94621 0.84834 0.92287 1.42513 1.77999 1.10412 1.05806 1.19595 1.34577 0.94130 0.88375 0.90621 1.25499 1.03335 0.96844 1.01269 1.69825 1.52734 1.10140 1.29199 0.85275 0.77860 0.77263 0.79746 1.20449 1.22529 1.20680 1.22600 0.90618 0.84772 0.98553 0.90273 1.22028 0.95676 0.96012 0.89172 1.48325 1.37175 1.19531 1.29693 1.21314 0.78102 0.87057 0.83288 1.90670 1.56210 1.25035 1.74350 1.21569 1.00715 0.98718 0.94850 1.19502 0.97284 0.95812 0.92291 1.22136 1.06477 0.93416 0.95631 1.24015 1.05666 0.95836 0.92509 1.47674 1.40715 1.08607 1.11230 1.22742 1.06172 1.07314 0.70767 1.78244 1.21875 1.16947 0.93291 1.75009 1.15750 1.11565 1.14731 1.22688 0.94210 0.83749 1.04647 1.23201 0.93406 0.98277 0.88501 1.88063 1.71068 1.27078 1.44165 0.94440 0.91347 0.93591 0.79119 0.94326 0.90191 0.92684 0.88150 0.86199 0.87910 0.91424 0.75014 0.87602 0.87628 0.84944 0.85426 0.91435 0.91062 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.30 71.98 0.67 -4.63 16 2 C 0.17 6.85 2.80 44.99 0.13 6.98 16 3 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 4 N -0.73 -37.07 4.24 -322.93 -1.37 -38.44 16 5 C -0.23 -13.20 9.93 84.03 0.83 -12.37 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 8 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 9 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 C 0.09 3.16 2.57 30.70 0.08 3.23 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.09 3.47 5.82 86.36 0.50 3.98 16 16 N -0.61 -17.97 3.02 -817.34 -2.47 -20.44 16 17 C 0.51 14.57 7.71 87.66 0.68 15.25 16 18 O -0.58 -21.04 15.45 -3.02 -0.05 -21.09 16 19 C -0.12 -2.32 4.05 29.85 0.12 -2.20 16 20 C -0.01 -0.18 5.08 29.85 0.15 -0.02 16 21 C -0.04 -0.70 6.50 41.59 0.27 -0.43 16 22 C -0.03 -0.32 11.54 83.49 0.96 0.64 16 23 N -0.29 -3.59 3.74 -369.25 -1.38 -4.97 16 24 C 0.07 0.07 11.39 127.77 1.46 1.52 16 25 N -0.12 -2.72 13.16 37.02 0.49 -2.23 16 26 N -0.30 -7.54 12.40 -48.60 -0.60 -8.15 16 27 C 0.07 1.54 6.54 86.35 0.56 2.11 16 28 C 0.04 0.94 6.99 72.08 0.50 1.45 16 29 O -0.39 -12.61 9.24 -148.98 -1.38 -13.98 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.75 7.57 -2.39 -0.02 1.74 16 33 H 0.38 21.03 7.08 -92.71 -0.66 20.38 16 34 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.08 3.14 7.08 -2.39 -0.02 3.12 16 36 H 0.05 2.49 6.94 -2.39 -0.02 2.48 16 37 H 0.10 2.04 8.02 -2.38 -0.02 2.02 16 38 H 0.12 1.65 7.66 -2.38 -0.02 1.64 16 39 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 40 H 0.07 1.58 8.10 -2.39 -0.02 1.57 16 41 H 0.23 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.13 1.85 6.05 -2.39 -0.01 1.83 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -83.80 393.04 3.25 -80.55 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.31 Total: 28.25 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 7.38 Total: 11.42 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -5.05 Total: -134.70 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.42 Total: -35.07 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -83.80 3.25 -80.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.155 kcal (2) G-P(sol) polarization free energy of solvation -83.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds