Wall clock time and date at job start Tue Mar 31 2020 19:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00121 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00072 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99871 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 14 14 H 1.09002 * 109.51456 * 175.10596 * 13 2 1 15 15 C 1.53297 * 109.51103 * 295.25304 * 13 2 1 16 16 N 1.47150 * 108.38802 * 172.22440 * 15 13 2 17 17 C 1.34777 * 120.98140 * 129.43775 * 16 15 13 18 18 O 1.21281 * 120.00100 * 0.02974 * 17 16 15 19 19 C 1.50705 * 119.99883 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.46865 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46865 * 179.97438 * 20 19 17 22 22 C 1.35355 * 126.74820 * 124.99865 * 21 20 19 23 23 N 1.35317 * 106.17097 * 180.02562 * 22 21 20 24 24 C 1.46500 * 125.86498 * 180.02562 * 23 22 21 25 25 N 1.28711 * 108.26425 * 0.02562 * 23 22 21 26 26 N 1.28633 * 110.17794 * 359.72465 * 25 23 22 27 27 C 1.47146 * 118.03626 * 309.46686 * 16 15 13 28 28 C 1.53300 * 108.38560 * 50.53272 * 27 16 15 29 29 O 1.42958 * 109.51333 * 54.99852 * 13 2 1 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 34 34 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.67876 * 291.95115 * 15 13 2 36 36 H 1.08996 * 109.68348 * 52.50224 * 15 13 2 37 37 H 1.08994 * 109.47001 * 300.00661 * 19 17 16 38 38 H 1.08993 * 109.46811 * 60.00505 * 19 17 16 39 39 H 1.08994 * 109.47459 * 299.99900 * 20 19 17 40 40 H 1.09002 * 109.47432 * 60.00126 * 20 19 17 41 41 H 1.07997 * 126.91134 * 0.03892 * 22 21 20 42 42 H 1.08997 * 109.47245 * 90.00029 * 24 23 22 43 43 H 1.09000 * 109.46821 * 210.00185 * 24 23 22 44 44 H 1.08998 * 109.46957 * 329.99982 * 24 23 22 45 45 H 1.08995 * 109.68538 * 290.81006 * 27 16 15 46 46 H 1.09000 * 109.71377 * 170.27259 * 27 16 15 47 47 H 1.08997 * 109.51507 * 187.77686 * 28 27 16 48 48 H 1.09003 * 109.55437 * 67.64767 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 4.1654 0.8587 -5.1927 11 1 2.5981 -0.6569 -6.2543 12 1 1.7929 1.3602 -5.1754 13 6 2.0400 -0.7213 1.2492 14 1 3.1265 -0.7982 1.2072 15 6 1.6295 0.0663 2.4987 16 7 1.9647 -0.7373 3.6849 17 6 2.6682 -0.2079 4.7054 18 8 3.0343 0.9472 4.6547 19 6 2.9997 -1.0513 5.9095 20 6 3.7975 -0.2162 6.9130 21 6 4.1285 -1.0594 8.1174 22 6 5.3590 -1.2863 8.6337 23 7 5.1757 -2.0948 9.7032 24 6 6.2298 -2.6087 10.5813 25 7 3.9162 -2.3347 9.8164 26 7 3.2637 -1.7274 8.8890 27 6 1.5098 -2.1361 3.7238 28 6 1.9262 -2.8165 2.4146 29 8 1.4705 -2.0311 1.3103 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.2571 -2.3939 -4.2397 35 1 2.1709 1.0119 2.5308 36 1 0.5567 0.2576 2.4761 37 1 2.0773 -1.3964 6.3765 38 1 3.5933 -1.9109 5.5986 39 1 4.7199 0.1292 6.4463 40 1 3.2036 0.6434 7.2238 41 1 6.2980 -0.8996 8.2662 42 1 6.3886 -1.9121 11.4045 43 1 5.9307 -3.5786 10.9787 44 1 7.1541 -2.7177 10.0141 45 1 0.4250 -2.1667 3.8245 46 1 1.9714 -2.6496 4.5672 47 1 1.4809 -3.8100 2.3630 48 1 3.0122 -2.9019 2.3772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:19 Heat of formation + Delta-G solvation = 36.799487 kcal Electronic energy + Delta-G solvation = -29065.444039 eV Core-core repulsion = 24965.567323 eV Total energy + Delta-G solvation = -4099.876716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62015 -40.37409 -38.47370 -35.55492 -35.49048 -34.49618 -33.82789 -32.47060 -30.80411 -30.11792 -28.50796 -28.33330 -27.31041 -25.41324 -24.32699 -23.41470 -22.48077 -22.22695 -21.16250 -19.63663 -19.05904 -17.78516 -17.32235 -17.03319 -16.97343 -16.32316 -15.96662 -15.74433 -15.16860 -15.09303 -14.77321 -14.47504 -14.22525 -14.12461 -13.80024 -13.70601 -13.32350 -13.15897 -12.94006 -12.71827 -12.65898 -12.41896 -12.07124 -12.02160 -11.80920 -11.63181 -11.27873 -11.09732 -11.02034 -10.82593 -10.69380 -10.50082 -10.44059 -10.25490 -10.03179 -9.79563 -9.76096 -9.61992 -9.47888 -8.86963 -8.44584 -6.90478 -5.71082 -2.99543 1.19198 1.93817 2.15272 2.56802 2.86311 3.46749 3.51923 3.53593 3.86406 4.01122 4.11753 4.28812 4.40305 4.58383 4.60511 4.65406 4.70123 4.79555 4.85086 4.92915 5.02417 5.14052 5.22830 5.23662 5.32763 5.38295 5.52082 5.62532 5.66754 5.71787 5.76259 5.77337 5.85366 5.92398 6.02111 6.04546 6.13440 6.24840 6.40898 6.50236 6.69281 6.86137 7.19754 7.31325 7.51320 7.74400 8.09115 8.13769 8.47196 9.59046 10.17035 10.53748 11.51399 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.001949 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.413548 B =14359.511673 C =14538.719805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.516 3.484 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.016 4.016 21 C -0.017 4.017 22 C -0.048 4.048 23 N -0.296 5.296 24 C 0.081 3.919 25 N -0.087 5.087 26 N -0.264 5.264 27 C 0.072 3.928 28 C 0.046 3.954 29 O -0.358 6.358 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.192 0.808 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -2.617 28.737 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.347 5.347 17 C 0.305 3.695 18 O -0.420 6.420 19 C -0.173 4.173 20 C -0.056 4.056 21 C -0.155 4.155 22 C -0.198 4.198 23 N -0.090 5.090 24 C -0.060 4.060 25 N -0.067 5.067 26 N -0.131 5.131 27 C -0.052 4.052 28 C -0.032 4.032 29 O -0.276 6.276 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.209 0.791 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.121 0.879 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.531 -2.700 29.274 29.746 hybrid contribution 1.368 0.514 -1.161 1.866 sum 5.899 -2.186 28.114 28.809 Atomic orbital electron populations 1.22410 0.98644 1.01619 0.99543 1.20202 0.92835 0.94609 0.84977 0.92305 1.42354 1.77860 1.10958 1.04890 1.19257 1.36323 0.93889 0.87438 0.91158 1.24739 1.02256 0.95981 0.98036 1.69680 1.50786 1.08653 1.28837 0.86203 0.77748 0.78597 0.83722 1.21816 1.21846 1.20772 1.22970 0.97559 0.83029 0.94760 0.91928 1.22485 1.01938 0.95856 0.83787 1.48195 1.54833 1.12719 1.18998 1.20632 0.77265 0.87848 0.83757 1.90698 1.53219 1.17923 1.80132 1.21603 1.02762 0.99104 0.93803 1.19611 1.01672 0.95594 0.88693 1.22046 0.89617 1.03184 1.00625 1.23453 1.01997 1.01432 0.92936 1.47244 1.07865 1.32643 1.21215 1.22279 0.87872 1.01913 0.93955 1.78319 0.88024 1.20557 1.19804 1.75050 1.26704 1.09224 1.02127 1.22517 1.00969 0.81730 0.99953 1.22902 0.99431 0.95236 0.85675 1.88105 1.67753 1.25705 1.46038 0.92921 0.92448 0.94642 0.77691 0.93611 0.88220 0.90166 0.88043 0.88924 0.89195 0.89165 0.79120 0.89049 0.87985 0.88201 0.90306 0.89083 0.87890 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.06 37.16 0.34 -2.69 16 2 C 0.18 3.73 2.77 -67.93 -0.19 3.54 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.37 5.10 -53.42 -0.27 -18.64 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 9 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.08 1.31 2.61 -26.58 -0.07 1.24 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.21 5.82 -3.53 -0.02 1.19 16 16 N -0.61 -7.86 3.02 -172.28 -0.52 -8.38 16 17 C 0.52 6.63 7.71 -10.98 -0.08 6.54 16 18 O -0.54 -8.72 15.45 5.56 0.09 -8.63 16 19 C -0.13 -1.24 4.05 -27.88 -0.11 -1.36 16 20 C -0.02 -0.15 5.08 -27.88 -0.14 -0.29 16 21 C -0.02 -0.16 6.50 -82.78 -0.54 -0.69 16 22 C -0.05 -0.32 11.54 -17.04 -0.20 -0.52 16 23 N -0.30 -2.08 3.74 -68.06 -0.25 -2.34 16 24 C 0.08 0.15 11.39 59.85 0.68 0.83 16 25 N -0.09 -0.94 13.16 60.35 0.79 -0.14 16 26 N -0.26 -3.10 12.40 33.29 0.41 -2.68 16 27 C 0.07 0.73 6.54 -3.53 -0.02 0.71 16 28 C 0.05 0.56 6.99 37.31 0.26 0.82 16 29 O -0.36 -6.08 9.24 -35.23 -0.33 -6.40 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.13 7.56 -51.93 -0.39 0.73 16 32 H 0.03 0.55 6.41 -51.93 -0.33 0.22 16 33 H 0.39 10.72 7.58 -40.82 -0.31 10.41 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 36 H 0.08 1.14 6.26 -51.93 -0.33 0.82 16 37 H 0.10 0.91 8.01 -51.93 -0.42 0.50 16 38 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 39 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.19 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.69 6.06 -51.93 -0.31 0.38 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.98 391.76 -6.28 -43.26 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.47 Total: 6.21 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.34 Total: 2.00 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.88 Total: -59.94 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.24 Total: -15.03 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.98 -6.28 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.059 kcal (2) G-P(sol) polarization free energy of solvation -36.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds