Wall clock time and date at job start Tue Mar 31 2020 19:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00121 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00072 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99871 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 14 14 H 1.09002 * 109.51456 * 175.10596 * 13 2 1 15 15 C 1.53297 * 109.51103 * 295.25304 * 13 2 1 16 16 N 1.47150 * 108.38802 * 172.22440 * 15 13 2 17 17 C 1.34777 * 120.98140 * 129.43775 * 16 15 13 18 18 O 1.21281 * 120.00100 * 0.02974 * 17 16 15 19 19 C 1.50705 * 119.99883 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.46865 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46865 * 179.97438 * 20 19 17 22 22 C 1.35355 * 126.74820 * 124.99865 * 21 20 19 23 23 N 1.35317 * 106.17097 * 180.02562 * 22 21 20 24 24 C 1.46500 * 125.86498 * 180.02562 * 23 22 21 25 25 N 1.28711 * 108.26425 * 0.02562 * 23 22 21 26 26 N 1.28633 * 110.17794 * 359.72465 * 25 23 22 27 27 C 1.47146 * 118.03626 * 309.46686 * 16 15 13 28 28 C 1.53300 * 108.38560 * 50.53272 * 27 16 15 29 29 O 1.42958 * 109.51333 * 54.99852 * 13 2 1 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 34 34 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.67876 * 291.95115 * 15 13 2 36 36 H 1.08996 * 109.68348 * 52.50224 * 15 13 2 37 37 H 1.08994 * 109.47001 * 300.00661 * 19 17 16 38 38 H 1.08993 * 109.46811 * 60.00505 * 19 17 16 39 39 H 1.08994 * 109.47459 * 299.99900 * 20 19 17 40 40 H 1.09002 * 109.47432 * 60.00126 * 20 19 17 41 41 H 1.07997 * 126.91134 * 0.03892 * 22 21 20 42 42 H 1.08997 * 109.47245 * 90.00029 * 24 23 22 43 43 H 1.09000 * 109.46821 * 210.00185 * 24 23 22 44 44 H 1.08998 * 109.46957 * 329.99982 * 24 23 22 45 45 H 1.08995 * 109.68538 * 290.81006 * 27 16 15 46 46 H 1.09000 * 109.71377 * 170.27259 * 27 16 15 47 47 H 1.08997 * 109.51507 * 187.77686 * 28 27 16 48 48 H 1.09003 * 109.55437 * 67.64767 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 4.1654 0.8587 -5.1927 11 1 2.5981 -0.6569 -6.2543 12 1 1.7929 1.3602 -5.1754 13 6 2.0400 -0.7213 1.2492 14 1 3.1265 -0.7982 1.2072 15 6 1.6295 0.0663 2.4987 16 7 1.9647 -0.7373 3.6849 17 6 2.6682 -0.2079 4.7054 18 8 3.0343 0.9472 4.6547 19 6 2.9997 -1.0513 5.9095 20 6 3.7975 -0.2162 6.9130 21 6 4.1285 -1.0594 8.1174 22 6 5.3590 -1.2863 8.6337 23 7 5.1757 -2.0948 9.7032 24 6 6.2298 -2.6087 10.5813 25 7 3.9162 -2.3347 9.8164 26 7 3.2637 -1.7274 8.8890 27 6 1.5098 -2.1361 3.7238 28 6 1.9262 -2.8165 2.4146 29 8 1.4705 -2.0311 1.3103 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.2571 -2.3939 -4.2397 35 1 2.1709 1.0119 2.5308 36 1 0.5567 0.2576 2.4761 37 1 2.0773 -1.3964 6.3765 38 1 3.5933 -1.9109 5.5986 39 1 4.7199 0.1292 6.4463 40 1 3.2036 0.6434 7.2238 41 1 6.2980 -0.8996 8.2662 42 1 6.3886 -1.9121 11.4045 43 1 5.9307 -3.5786 10.9787 44 1 7.1541 -2.7177 10.0141 45 1 0.4250 -2.1667 3.8245 46 1 1.9714 -2.6496 4.5672 47 1 1.4809 -3.8100 2.3630 48 1 3.0122 -2.9019 2.3772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330448013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:18 Heat of formation + Delta-G solvation = 9.465316 kcal Electronic energy + Delta-G solvation = -29066.629338 eV Core-core repulsion = 24965.567323 eV Total energy + Delta-G solvation = -4101.062015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.20297 -41.46380 -39.67649 -37.10354 -36.12737 -35.70694 -34.54563 -34.22989 -32.02566 -31.15774 -29.94556 -28.85386 -28.42363 -26.65609 -25.75439 -24.73431 -23.47556 -23.01180 -21.86858 -21.14480 -20.04496 -19.27741 -18.49148 -17.80309 -17.66589 -17.47596 -16.97695 -16.86570 -16.54802 -16.03583 -15.96864 -15.74974 -15.34476 -15.11814 -14.97440 -14.61225 -14.29589 -14.08457 -13.98539 -13.81784 -13.67642 -13.45003 -13.39710 -13.06168 -12.84935 -12.79203 -12.58238 -12.42580 -12.37361 -12.27631 -12.16775 -11.82782 -11.65806 -11.62567 -11.53408 -11.14354 -10.98158 -10.91658 -10.79624 -10.12180 -9.56486 -8.99172 -7.90924 -5.19401 0.66044 1.46333 1.48267 1.50023 1.57200 1.58451 1.59619 1.88397 2.57936 2.81669 3.27933 3.42658 3.55234 3.63521 3.75519 3.95243 3.98651 4.03536 4.04186 4.13268 4.17442 4.20965 4.34939 4.35227 4.39232 4.41369 4.49306 4.62992 4.64358 4.66544 4.67527 4.77053 4.83558 4.87905 4.99134 5.01469 5.11327 5.12592 5.24186 5.26473 5.34451 5.53178 5.63424 5.70347 6.27669 6.30362 6.33721 7.08587 7.36927 7.51571 8.12747 8.37789 9.32586 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.001949 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.413548 B =14359.511673 C =14538.719805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.059 0.941 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.269 1.269 13 C 0.091 3.909 14 H 0.041 0.959 15 C 0.092 3.908 16 N -0.616 5.616 17 C 0.515 3.485 18 O -0.579 6.579 19 C -0.121 4.121 20 C -0.009 4.009 21 C -0.037 4.037 22 C -0.032 4.032 23 N -0.289 5.289 24 C 0.069 3.931 25 N -0.123 5.123 26 N -0.301 5.301 27 C 0.076 3.924 28 C 0.038 3.962 29 O -0.383 6.383 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -2.619 30.411 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.372 5.372 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.223 1.223 12 H -0.194 1.194 13 C 0.032 3.968 14 H 0.059 0.941 15 C -0.031 4.031 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.459 6.459 19 C -0.161 4.161 20 C -0.049 4.049 21 C -0.176 4.176 22 C -0.184 4.184 23 N -0.082 5.082 24 C -0.070 4.070 25 N -0.103 5.103 26 N -0.167 5.167 27 C -0.046 4.046 28 C -0.039 4.039 29 O -0.302 6.302 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.246 0.754 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.210 -2.704 31.020 31.571 hybrid contribution 1.208 0.495 -1.553 2.029 sum 6.418 -2.209 29.467 30.239 Atomic orbital electron populations 1.22209 0.96987 1.01134 1.00432 1.20439 0.93839 0.94536 0.84567 0.92363 1.42523 1.78277 1.10457 1.05963 1.19658 1.34730 0.94243 0.88409 0.90527 1.25559 1.03066 0.96924 1.01463 1.69842 1.52549 1.10242 1.29377 0.85148 0.77847 0.77427 0.79393 1.21497 1.22324 1.19433 1.22553 0.96005 0.83806 0.94463 0.94116 1.22203 1.02121 0.95194 0.83623 1.48294 1.54780 1.13604 1.18249 1.21239 0.76268 0.87673 0.84309 1.90681 1.54578 1.19700 1.80929 1.21574 1.03445 0.98939 0.92130 1.19507 1.01677 0.95031 0.88699 1.22152 0.90524 1.03914 1.00979 1.24020 1.02552 0.99925 0.91921 1.47654 1.07653 1.31637 1.21302 1.22736 0.87549 1.02380 0.94343 1.78234 0.89720 1.21890 1.20426 1.74975 1.28212 1.10403 1.03097 1.22660 1.01958 0.80177 0.99796 1.23204 0.99538 0.95866 0.85334 1.88054 1.68036 1.25665 1.48441 0.94479 0.93542 0.91206 0.79283 0.94169 0.89306 0.89278 0.87349 0.87028 0.88460 0.90731 0.75368 0.87505 0.87583 0.85188 0.89113 0.85856 0.85579 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.06 71.98 0.65 -4.78 16 2 C 0.18 7.13 2.77 44.99 0.12 7.25 16 3 H 0.06 2.36 8.08 -2.39 -0.02 2.35 16 4 N -0.73 -38.15 5.10 -322.93 -1.65 -39.80 16 5 C -0.24 -13.52 9.93 84.04 0.83 -12.68 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 8 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 9 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.09 3.15 2.61 30.69 0.08 3.23 16 14 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 15 C 0.09 2.64 5.82 86.35 0.50 3.14 16 16 N -0.62 -14.84 3.02 -817.36 -2.47 -17.31 16 17 C 0.51 12.56 7.71 87.66 0.68 13.23 16 18 O -0.58 -18.39 15.45 -3.03 -0.05 -18.43 16 19 C -0.12 -2.04 4.05 29.85 0.12 -1.92 16 20 C -0.01 -0.16 5.08 29.85 0.15 -0.01 16 21 C -0.04 -0.63 6.50 41.60 0.27 -0.36 16 22 C -0.03 -0.36 11.54 83.49 0.96 0.61 16 23 N -0.29 -3.44 3.74 -369.23 -1.38 -4.83 16 24 C 0.07 0.06 11.39 127.77 1.46 1.51 16 25 N -0.12 -2.54 13.16 37.02 0.49 -2.05 16 26 N -0.30 -6.84 12.40 -48.60 -0.60 -7.45 16 27 C 0.08 1.37 6.54 86.36 0.56 1.93 16 28 C 0.04 0.87 6.99 72.08 0.50 1.37 16 29 O -0.38 -12.84 9.24 -148.98 -1.38 -14.22 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 32 H 0.07 2.06 6.41 -2.39 -0.02 2.04 16 33 H 0.38 21.32 7.58 -92.71 -0.70 20.62 16 34 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.09 2.76 7.08 -2.39 -0.02 2.74 16 36 H 0.09 2.39 6.26 -2.39 -0.01 2.37 16 37 H 0.11 1.73 8.01 -2.39 -0.02 1.71 16 38 H 0.11 1.48 7.66 -2.39 -0.02 1.47 16 39 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 40 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 41 H 0.23 0.50 8.06 -2.91 -0.02 0.47 16 42 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.13 -0.66 8.14 -2.39 -0.02 -0.67 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.12 1.44 6.06 -2.39 -0.01 1.43 16 47 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -82.77 391.76 2.91 -79.86 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.27 Total: 27.08 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.37 Total: 8.42 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -5.33 Total: -131.73 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.42 Total: -32.65 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -82.77 2.91 -79.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.321 kcal (2) G-P(sol) polarization free energy of solvation -82.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds