Wall clock time and date at job start Tue Mar 31 2020 19:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 60.00163 * 9 7 5 11 11 H 1.48499 * 109.47297 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47076 * 299.99885 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 H 1.09003 * 109.51195 * 184.90059 * 13 2 1 15 15 C 1.53289 * 109.51342 * 64.74607 * 13 2 1 16 16 N 1.47157 * 108.38589 * 187.77541 * 15 13 2 17 17 C 1.34773 * 120.98254 * 230.55529 * 16 15 13 18 18 O 1.21280 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99768 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.47496 * 179.97438 * 20 19 17 22 22 C 1.35356 * 126.74996 * 124.99421 * 21 20 19 23 23 N 1.35311 * 106.17058 * 180.02562 * 22 21 20 24 24 C 1.46508 * 125.86213 * 179.97438 * 23 22 21 25 25 N 1.28708 * 108.26919 * 0.02562 * 23 22 21 26 26 N 1.28641 * 110.17506 * 359.72123 * 25 23 22 27 27 C 1.47156 * 118.03038 * 50.53405 * 16 15 13 28 28 C 1.53296 * 108.38620 * 309.46275 * 27 16 15 29 29 O 1.42959 * 109.50837 * 304.99661 * 13 2 1 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.68449 * 307.49492 * 15 13 2 36 36 H 1.09001 * 109.68782 * 68.04895 * 15 13 2 37 37 H 1.09003 * 109.47189 * 299.99541 * 19 17 16 38 38 H 1.08998 * 109.47714 * 59.99616 * 19 17 16 39 39 H 1.08997 * 109.47496 * 299.99877 * 20 19 17 40 40 H 1.09004 * 109.47340 * 59.99937 * 20 19 17 41 41 H 1.08001 * 126.90910 * 359.97438 * 22 21 20 42 42 H 1.08993 * 109.47322 * 90.00251 * 24 23 22 43 43 H 1.08998 * 109.46626 * 210.00240 * 24 23 22 44 44 H 1.09003 * 109.46783 * 329.99729 * 24 23 22 45 45 H 1.09000 * 109.67586 * 189.74729 * 27 16 15 46 46 H 1.08995 * 109.71559 * 69.21056 * 27 16 15 47 47 H 1.09006 * 109.51384 * 292.38718 * 28 27 16 48 48 H 1.08998 * 109.55160 * 172.25741 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.4667 0.8062 5.5285 11 1 3.2984 -0.6488 6.1685 12 1 3.7445 1.3921 4.9377 13 6 2.0400 -0.7212 -1.2494 14 1 3.1265 -0.7982 -1.2072 15 6 1.6295 0.0665 -2.4987 16 7 1.9647 -0.7371 -3.6850 17 6 2.6680 -0.2077 -4.7055 18 8 3.0341 0.9475 -4.6548 19 6 2.9995 -1.0510 -5.9096 20 6 3.7983 -0.2163 -6.9126 21 6 4.1304 -1.0598 -8.1165 22 6 3.8483 -0.7731 -9.4089 23 7 4.3289 -1.8069 -10.1378 24 6 4.2534 -1.9381 -11.5950 25 7 4.8629 -2.6556 -9.3309 26 7 4.7658 -2.2368 -8.1184 27 6 1.5097 -2.1360 -3.7238 28 6 1.9261 -2.8164 -2.4147 29 8 1.4705 -2.0310 -1.3104 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2480 -2.3964 4.2420 35 1 0.5566 0.2577 -2.4761 36 1 2.1708 1.0121 -2.5309 37 1 3.5932 -1.9107 -5.5987 38 1 2.0772 -1.3962 -6.3766 39 1 3.2051 0.6437 -7.2236 40 1 4.7208 0.1285 -6.4454 41 1 3.3408 0.1038 -9.7830 42 1 5.1370 -1.4874 -12.0467 43 1 4.2066 -2.9936 -11.8628 44 1 3.3601 -1.4308 -11.9596 45 1 1.9718 -2.6490 -4.5672 46 1 0.4249 -2.1671 -3.8248 47 1 3.0123 -2.9009 -2.3778 48 1 1.4816 -3.8102 -2.3627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:21 Heat of formation + Delta-G solvation = 37.285669 kcal Electronic energy + Delta-G solvation = -29055.129813 eV Core-core repulsion = 24955.274180 eV Total energy + Delta-G solvation = -4099.855634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62174 -40.36827 -38.46328 -35.55697 -35.47822 -34.48557 -33.82937 -32.45396 -30.80214 -30.10667 -28.50389 -28.33032 -27.30417 -25.40865 -24.31786 -23.39936 -22.48224 -22.21649 -21.16539 -19.62384 -19.05153 -17.78848 -17.31038 -17.02256 -16.98595 -16.31194 -15.96626 -15.73190 -15.21680 -15.07673 -14.58722 -14.52085 -14.37754 -14.06538 -13.80734 -13.69026 -13.30223 -13.17557 -12.87348 -12.72393 -12.68598 -12.42099 -12.05877 -11.98571 -11.83655 -11.62134 -11.27752 -11.08060 -11.00336 -10.79222 -10.68686 -10.48948 -10.44011 -10.25940 -10.03341 -9.78667 -9.74642 -9.59824 -9.48772 -8.84642 -8.43932 -6.88683 -5.68874 -2.97522 1.18771 1.93278 2.15667 2.56577 2.86737 3.49031 3.53181 3.54258 3.85602 4.03028 4.10855 4.28281 4.39212 4.57717 4.62086 4.65073 4.68781 4.80574 4.83436 4.96545 5.01070 5.15462 5.19180 5.28395 5.32449 5.38964 5.52252 5.64104 5.66660 5.73407 5.77541 5.78934 5.86933 5.92485 6.03108 6.05196 6.12978 6.25660 6.41568 6.51293 6.69856 6.86785 7.20308 7.31503 7.53203 7.75582 8.09207 8.14157 8.49290 9.61004 10.19067 10.55771 11.53485 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.001916 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.327745 B =14612.022916 C =14686.963045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.516 3.484 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.016 4.016 21 C -0.016 4.016 22 C -0.049 4.049 23 N -0.296 5.296 24 C 0.081 3.919 25 N -0.087 5.087 26 N -0.263 5.263 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.358 6.358 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.191 0.809 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -0.034 -32.678 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.081 0.919 15 C -0.040 4.040 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.420 6.420 19 C -0.173 4.173 20 C -0.056 4.056 21 C -0.154 4.154 22 C -0.200 4.200 23 N -0.090 5.090 24 C -0.060 4.060 25 N -0.066 5.066 26 N -0.130 5.130 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.276 6.276 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.208 0.792 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.347 -0.734 -32.290 32.327 hybrid contribution -0.290 1.085 0.316 1.167 sum -1.638 0.351 -31.974 32.018 Atomic orbital electron populations 1.22413 0.98700 1.01591 0.99489 1.20197 0.92790 0.94616 0.85008 0.92325 1.42343 1.77853 1.10966 1.04873 1.19208 1.36636 0.93825 0.87382 0.91227 1.24738 1.02241 0.95963 0.97998 1.69671 1.50751 1.08630 1.28869 0.86279 0.77733 0.78577 0.83652 1.21319 1.21765 1.21324 1.22973 0.97648 0.83027 0.94723 0.91857 1.22483 1.01839 0.95879 0.83836 1.48202 1.54843 1.12714 1.18992 1.20627 0.77200 0.87818 0.83858 1.90697 1.53080 1.17961 1.80234 1.21603 1.02094 0.99682 0.93898 1.19613 1.01398 0.95076 0.89502 1.22053 1.02722 0.95655 0.94993 1.23429 1.07649 0.96873 0.92009 1.47251 1.37754 1.14278 1.09717 1.22274 1.04775 1.05994 0.72958 1.78337 1.17140 1.16197 0.94952 1.75076 1.16056 1.10642 1.11197 1.22516 1.00757 0.81755 1.00130 1.22905 0.99616 0.95190 0.85587 1.88100 1.67749 1.25702 1.46074 0.92938 0.92460 0.94695 0.77667 0.93545 0.90215 0.88227 0.87979 0.88986 0.89262 0.89085 0.79168 0.89046 0.87987 0.88256 0.89041 0.90446 0.92752 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.06 37.16 0.34 -2.69 16 2 C 0.18 3.76 2.77 -67.93 -0.19 3.58 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.53 5.10 -53.43 -0.27 -18.80 16 5 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 9 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.08 1.32 2.61 -26.58 -0.07 1.25 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.08 1.21 5.82 -3.53 -0.02 1.19 16 16 N -0.61 -7.86 3.02 -172.28 -0.52 -8.38 16 17 C 0.52 6.63 7.71 -10.99 -0.08 6.54 16 18 O -0.54 -8.72 15.45 5.56 0.09 -8.63 16 19 C -0.13 -1.24 4.05 -27.89 -0.11 -1.36 16 20 C -0.02 -0.15 5.08 -27.88 -0.14 -0.29 16 21 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 22 C -0.05 -0.32 11.54 -17.05 -0.20 -0.52 16 23 N -0.30 -2.05 3.74 -68.05 -0.25 -2.31 16 24 C 0.08 0.13 11.39 59.85 0.68 0.81 16 25 N -0.09 -0.94 13.17 60.35 0.79 -0.14 16 26 N -0.26 -3.14 12.40 33.29 0.41 -2.73 16 27 C 0.07 0.74 6.54 -3.53 -0.02 0.71 16 28 C 0.05 0.57 6.99 37.31 0.26 0.83 16 29 O -0.36 -6.15 9.24 -35.23 -0.33 -6.48 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 32 H 0.03 0.54 6.41 -51.93 -0.33 0.21 16 33 H 0.39 10.83 7.58 -40.82 -0.31 10.52 16 34 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.12 6.26 -51.93 -0.33 0.80 16 36 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 37 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 38 H 0.09 0.70 8.01 -51.93 -0.42 0.28 16 39 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 41 H 0.19 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 43 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.09 0.71 6.05 -51.93 -0.31 0.39 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -37.30 391.76 -6.28 -43.58 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.47 Total: 6.22 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.34 Total: 1.98 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.88 Total: -60.34 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.24 Total: -15.11 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.30 -6.28 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.866 kcal (2) G-P(sol) polarization free energy of solvation -37.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds