Wall clock time and date at job start Tue Mar 31 2020 19:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 60.00163 * 9 7 5 11 11 H 1.48499 * 109.47297 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47076 * 299.99885 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 H 1.09003 * 109.51195 * 184.90059 * 13 2 1 15 15 C 1.53289 * 109.51342 * 64.74607 * 13 2 1 16 16 N 1.47157 * 108.38589 * 187.77541 * 15 13 2 17 17 C 1.34773 * 120.98254 * 230.55529 * 16 15 13 18 18 O 1.21280 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99768 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.47496 * 179.97438 * 20 19 17 22 22 C 1.35356 * 126.74996 * 124.99421 * 21 20 19 23 23 N 1.35311 * 106.17058 * 180.02562 * 22 21 20 24 24 C 1.46508 * 125.86213 * 179.97438 * 23 22 21 25 25 N 1.28708 * 108.26919 * 0.02562 * 23 22 21 26 26 N 1.28641 * 110.17506 * 359.72123 * 25 23 22 27 27 C 1.47156 * 118.03038 * 50.53405 * 16 15 13 28 28 C 1.53296 * 108.38620 * 309.46275 * 27 16 15 29 29 O 1.42959 * 109.50837 * 304.99661 * 13 2 1 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.68449 * 307.49492 * 15 13 2 36 36 H 1.09001 * 109.68782 * 68.04895 * 15 13 2 37 37 H 1.09003 * 109.47189 * 299.99541 * 19 17 16 38 38 H 1.08998 * 109.47714 * 59.99616 * 19 17 16 39 39 H 1.08997 * 109.47496 * 299.99877 * 20 19 17 40 40 H 1.09004 * 109.47340 * 59.99937 * 20 19 17 41 41 H 1.08001 * 126.90910 * 359.97438 * 22 21 20 42 42 H 1.08993 * 109.47322 * 90.00251 * 24 23 22 43 43 H 1.08998 * 109.46626 * 210.00240 * 24 23 22 44 44 H 1.09003 * 109.46783 * 329.99729 * 24 23 22 45 45 H 1.09000 * 109.67586 * 189.74729 * 27 16 15 46 46 H 1.08995 * 109.71559 * 69.21056 * 27 16 15 47 47 H 1.09006 * 109.51384 * 292.38718 * 28 27 16 48 48 H 1.08998 * 109.55160 * 172.25741 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.4667 0.8062 5.5285 11 1 3.2984 -0.6488 6.1685 12 1 3.7445 1.3921 4.9377 13 6 2.0400 -0.7212 -1.2494 14 1 3.1265 -0.7982 -1.2072 15 6 1.6295 0.0665 -2.4987 16 7 1.9647 -0.7371 -3.6850 17 6 2.6680 -0.2077 -4.7055 18 8 3.0341 0.9475 -4.6548 19 6 2.9995 -1.0510 -5.9096 20 6 3.7983 -0.2163 -6.9126 21 6 4.1304 -1.0598 -8.1165 22 6 3.8483 -0.7731 -9.4089 23 7 4.3289 -1.8069 -10.1378 24 6 4.2534 -1.9381 -11.5950 25 7 4.8629 -2.6556 -9.3309 26 7 4.7658 -2.2368 -8.1184 27 6 1.5097 -2.1360 -3.7238 28 6 1.9261 -2.8164 -2.4147 29 8 1.4705 -2.0310 -1.3104 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2480 -2.3964 4.2420 35 1 0.5566 0.2577 -2.4761 36 1 2.1708 1.0121 -2.5309 37 1 3.5932 -1.9107 -5.5987 38 1 2.0772 -1.3962 -6.3766 39 1 3.2051 0.6437 -7.2236 40 1 4.7208 0.1285 -6.4454 41 1 3.3408 0.1038 -9.7830 42 1 5.1370 -1.4874 -12.0467 43 1 4.2066 -2.9936 -11.8628 44 1 3.3601 -1.4308 -11.9596 45 1 1.9718 -2.6490 -4.5672 46 1 0.4249 -2.1671 -3.8248 47 1 3.0123 -2.9009 -2.3778 48 1 1.4816 -3.8102 -2.3627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330448014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:20 Heat of formation + Delta-G solvation = 9.416976 kcal Electronic energy + Delta-G solvation = -29056.338290 eV Core-core repulsion = 24955.274180 eV Total energy + Delta-G solvation = -4101.064111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.19894 -41.46401 -39.67867 -37.10351 -36.12365 -35.70767 -34.54460 -34.23031 -32.02649 -31.15502 -29.94507 -28.84958 -28.42122 -26.65564 -25.75450 -24.73876 -23.47596 -23.00473 -21.86889 -21.14947 -20.04106 -19.27917 -18.48788 -17.79841 -17.66780 -17.47438 -16.99328 -16.85805 -16.54957 -16.04541 -16.01183 -15.63109 -15.39009 -15.15458 -14.98621 -14.59817 -14.26951 -14.08698 -13.98129 -13.80555 -13.67917 -13.45258 -13.39445 -13.06623 -12.82551 -12.77448 -12.57569 -12.42283 -12.38141 -12.27658 -12.20877 -11.82943 -11.64610 -11.61965 -11.54064 -11.15371 -10.97555 -10.91087 -10.79386 -10.12016 -9.56486 -8.99405 -7.90792 -5.19563 0.66957 1.47035 1.47842 1.51283 1.56107 1.57255 1.60891 1.89105 2.57982 2.80913 3.28290 3.42581 3.55277 3.64084 3.76339 3.94839 3.98451 4.03497 4.04100 4.13730 4.16667 4.22282 4.34135 4.35921 4.39518 4.42551 4.49845 4.62429 4.64096 4.66621 4.67185 4.78056 4.83118 4.87520 4.98826 5.01747 5.11471 5.13724 5.24320 5.26645 5.34544 5.52536 5.64034 5.71434 6.26795 6.30129 6.33549 7.08646 7.36569 7.52497 8.12708 8.37501 9.32531 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.001916 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.327745 B =14612.022916 C =14686.963045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.058 0.942 4 N -0.733 5.733 5 C -0.241 4.241 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.974 3.026 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.089 3.911 14 H 0.036 0.964 15 C 0.093 3.907 16 N -0.616 5.616 17 C 0.515 3.485 18 O -0.579 6.579 19 C -0.121 4.121 20 C -0.010 4.010 21 C -0.038 4.038 22 C -0.029 4.029 23 N -0.289 5.289 24 C 0.069 3.931 25 N -0.125 5.125 26 N -0.304 5.304 27 C 0.077 3.923 28 C 0.036 3.964 29 O -0.382 6.382 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.233 0.767 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.044 0.956 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 0.821 -35.510 35.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.373 5.373 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.205 1.205 13 C 0.030 3.970 14 H 0.054 0.946 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.305 3.695 18 O -0.459 6.459 19 C -0.161 4.161 20 C -0.049 4.049 21 C -0.177 4.177 22 C -0.181 4.181 23 N -0.082 5.082 24 C -0.070 4.070 25 N -0.105 5.105 26 N -0.170 5.170 27 C -0.045 4.045 28 C -0.041 4.041 29 O -0.301 6.301 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.151 0.849 45 H 0.140 0.860 46 H 0.114 0.886 47 H 0.062 0.938 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.960 0.115 -35.189 35.313 hybrid contribution 0.199 0.827 1.027 1.333 sum -2.761 0.942 -34.162 34.286 Atomic orbital electron populations 1.22203 0.96780 1.01164 1.00515 1.20444 0.93978 0.94473 0.84482 0.92411 1.42525 1.78322 1.10446 1.06002 1.19631 1.35030 0.94235 0.88340 0.90481 1.25575 1.03033 0.96907 1.01502 1.69842 1.52565 1.10271 1.29375 0.85207 0.77972 0.77239 0.79311 1.20304 1.22297 1.20489 1.22569 0.95834 0.83899 0.94716 0.94581 1.22201 1.02261 0.95083 0.83488 1.48305 1.54826 1.13592 1.18229 1.21237 0.76144 0.87648 0.84462 1.90680 1.54363 1.19796 1.81052 1.21576 1.03277 0.98826 0.92415 1.19514 1.00507 0.95452 0.89452 1.22170 1.03822 0.95471 0.96224 1.24032 1.05845 0.97284 0.90967 1.47674 1.35918 1.13440 1.11204 1.22742 1.07099 1.07036 0.70123 1.78250 1.19169 1.17801 0.95232 1.75000 1.17502 1.12224 1.12309 1.22657 1.02091 0.80123 0.99607 1.23207 0.99334 0.95996 0.85587 1.88050 1.67917 1.25653 1.48459 0.94465 0.93536 0.91004 0.79342 0.94174 0.88850 0.89397 0.88082 0.86308 0.87879 0.91332 0.75022 0.87616 0.87665 0.84942 0.85990 0.88557 0.93801 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.06 71.98 0.65 -4.72 16 2 C 0.18 7.21 2.77 44.99 0.12 7.33 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 N -0.73 -38.75 5.10 -322.94 -1.65 -40.40 16 5 C -0.24 -13.79 9.93 84.04 0.83 -12.95 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 8 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 9 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.09 3.16 2.61 30.69 0.08 3.24 16 14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.09 2.67 5.82 86.35 0.50 3.17 16 16 N -0.62 -14.84 3.02 -817.35 -2.47 -17.31 16 17 C 0.51 12.57 7.71 87.66 0.68 13.25 16 18 O -0.58 -18.41 15.45 -3.03 -0.05 -18.45 16 19 C -0.12 -2.05 4.05 29.85 0.12 -1.93 16 20 C -0.01 -0.16 5.08 29.85 0.15 -0.01 16 21 C -0.04 -0.65 6.50 41.60 0.27 -0.38 16 22 C -0.03 -0.30 11.54 83.49 0.96 0.66 16 23 N -0.29 -3.35 3.74 -369.22 -1.38 -4.73 16 24 C 0.07 0.02 11.39 127.77 1.46 1.48 16 25 N -0.13 -2.63 13.17 37.02 0.49 -2.14 16 26 N -0.30 -7.17 12.40 -48.60 -0.60 -7.77 16 27 C 0.08 1.39 6.54 86.35 0.56 1.95 16 28 C 0.04 0.87 6.99 72.08 0.50 1.37 16 29 O -0.38 -13.06 9.24 -148.98 -1.38 -14.44 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 32 H 0.07 2.07 6.41 -2.38 -0.02 2.06 16 33 H 0.37 21.66 7.58 -92.71 -0.70 20.95 16 34 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 35 H 0.09 2.42 6.26 -2.38 -0.01 2.40 16 36 H 0.09 2.74 7.08 -2.39 -0.02 2.73 16 37 H 0.10 1.78 7.66 -2.39 -0.02 1.76 16 38 H 0.12 1.40 8.01 -2.39 -0.02 1.38 16 39 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 40 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 41 H 0.23 0.14 8.06 -2.91 -0.02 0.12 16 42 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.12 1.48 6.05 -2.39 -0.01 1.46 16 46 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -84.69 391.76 2.91 -81.78 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.27 Total: 26.79 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 7.37 Total: 8.29 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -5.33 Total: -133.48 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.42 Total: -32.89 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -84.69 2.91 -81.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.195 kcal (2) G-P(sol) polarization free energy of solvation -84.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds