Wall clock time and date at job start Tue Mar 31 2020 19:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46690 * 2 1 4 4 C 1.52992 * 109.47167 * 240.00003 * 2 1 3 5 5 N 1.46506 * 109.47110 * 185.00042 * 4 2 1 6 6 C 1.46492 * 119.99800 * 269.99838 * 5 4 2 7 7 C 1.34773 * 119.99968 * 89.99382 * 5 4 2 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 5 4 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47259 * 179.72770 * 9 7 5 11 11 C 1.39872 * 126.04010 * 90.02720 * 10 9 7 12 12 N 1.30837 * 108.20001 * 179.97438 * 11 10 9 13 13 N 1.40082 * 108.20971 * 359.97438 * 12 11 10 14 14 C 1.46499 * 126.03943 * 180.02562 * 13 12 11 15 15 C 1.34954 * 107.92339 * 359.76006 * 13 12 11 16 16 N 1.46902 * 109.46971 * 119.99503 * 2 1 3 17 17 C 1.46902 * 111.00097 * 275.00347 * 16 2 1 18 18 C 1.50703 * 109.46959 * 180.02562 * 17 16 2 19 19 O 1.21287 * 119.99655 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99809 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00010 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99897 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00128 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99771 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00150 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46879 * 59.99865 * 25 23 21 27 27 H 1.48500 * 109.47492 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47077 * 300.00360 * 25 23 21 29 29 H 1.09006 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47547 * 300.00249 * 1 2 3 31 31 H 1.09006 * 109.46904 * 60.00531 * 1 2 3 32 32 H 1.08995 * 109.47699 * 64.99648 * 4 2 1 33 33 H 1.09002 * 109.47212 * 304.99818 * 4 2 1 34 34 H 1.09001 * 109.47443 * 269.99328 * 6 5 4 35 35 H 1.08999 * 109.47479 * 30.00306 * 6 5 4 36 36 H 1.09006 * 109.47080 * 149.99714 * 6 5 4 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 5 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 5 39 39 H 1.07998 * 125.89837 * 359.97438 * 11 10 9 40 40 H 1.08998 * 109.47152 * 89.97766 * 14 13 12 41 41 H 1.09003 * 109.46913 * 209.96964 * 14 13 12 42 42 H 1.08996 * 109.47157 * 329.97389 * 14 13 12 43 43 H 1.08001 * 126.12637 * 180.23963 * 15 13 12 44 44 H 1.00901 * 110.99826 * 151.04796 * 16 2 1 45 45 H 1.08999 * 109.47064 * 299.99937 * 17 16 2 46 46 H 1.09002 * 109.47129 * 60.00077 * 17 16 2 47 47 H 0.97002 * 120.00139 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99548 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0758 -1.8985 -0.6114 8 8 3.3851 -2.7741 -0.1345 9 6 5.5777 -2.0064 -0.5505 10 6 5.9616 -3.2856 0.1475 11 6 6.1731 -4.5255 -0.4643 12 7 6.4902 -5.3908 0.4644 13 7 6.4911 -4.7278 1.6984 14 6 6.7942 -5.3289 2.9996 15 6 6.1692 -3.4362 1.4762 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5884 -0.5213 3.5558 19 8 2.8687 -1.6982 3.4700 20 7 2.7285 0.1208 4.7325 21 6 3.1883 -0.5561 5.8324 22 1 3.4379 -1.6041 5.7560 23 6 3.3332 0.1060 7.0453 24 7 3.0299 1.3813 7.1380 25 14 3.9591 -0.8166 8.5441 26 1 5.3150 -1.3535 8.2642 27 1 4.0233 0.1087 9.7039 28 1 3.0371 -1.9383 8.8556 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5426 0.0092 -2.8072 35 1 3.8091 1.1866 -1.6918 36 1 5.2722 0.2953 -1.2091 37 1 5.9831 -2.0088 -1.5623 38 1 5.9810 -1.1567 0.0004 39 1 6.0891 -4.7328 -1.5209 40 1 7.8630 -5.2474 3.1974 41 1 6.2397 -4.8064 3.7792 42 1 6.5054 -6.3799 2.9904 43 1 6.0888 -2.6621 2.2250 44 1 2.9173 -1.1204 1.0288 45 1 2.7587 1.0463 2.1183 46 1 1.0869 0.6164 2.5525 47 1 2.5039 1.0620 4.8011 48 1 3.1308 1.8434 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331402931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:06 Heat of formation + Delta-G solvation = 21.474059 kcal Electronic energy + Delta-G solvation = -30279.444990 eV Core-core repulsion = 26178.903713 eV Total energy + Delta-G solvation = -4100.541276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10109 -39.94519 -38.17111 -36.56591 -34.86392 -33.83566 -33.47682 -31.76824 -31.23210 -30.72802 -28.45561 -27.46135 -26.32953 -26.25169 -24.88109 -23.86292 -20.93455 -20.83311 -20.11491 -19.29934 -18.92359 -17.85601 -17.01776 -16.73770 -16.55000 -15.96020 -15.51158 -15.19711 -15.05610 -14.66479 -14.41435 -14.28364 -13.81684 -13.68245 -13.49006 -13.32874 -13.13136 -12.82891 -12.68194 -12.56359 -12.46395 -12.36915 -12.24538 -11.97884 -11.80200 -11.71495 -11.56188 -11.41676 -11.28504 -11.06843 -10.79759 -10.45617 -10.44516 -10.19732 -9.63053 -9.46970 -9.21341 -8.65775 -8.32306 -8.21499 -7.93937 -7.84262 -6.39351 -3.79735 2.09757 2.68166 2.77765 2.81700 3.19264 3.19846 3.25089 3.29048 3.96948 4.13937 4.41292 4.64026 4.73757 4.89617 4.94387 5.03309 5.10738 5.19114 5.22482 5.24243 5.25589 5.27511 5.37801 5.40434 5.41776 5.46495 5.53773 5.54254 5.64118 5.81265 5.85513 5.89089 5.95952 6.07385 6.11792 6.23143 6.29636 6.39406 6.54322 6.78118 7.17584 7.35809 7.45169 7.56343 7.86349 7.92921 8.09804 8.36140 8.66175 9.21098 9.58651 10.11820 10.78681 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.004337 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.897389 B = 6454.957628 C = 9307.838933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.038 0.962 4 C 0.114 3.886 5 N -0.631 5.631 6 C 0.078 3.922 7 C 0.501 3.499 8 O -0.493 6.493 9 C -0.054 4.054 10 C -0.232 4.232 11 C 0.061 3.939 12 N -0.306 5.306 13 N -0.372 5.372 14 C 0.101 3.899 15 C 0.089 3.911 16 N -0.658 5.658 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.574 6.574 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.101 0.899 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.177 0.823 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.174 0.826 44 H 0.355 0.645 45 H 0.036 0.964 46 H 0.083 0.917 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 0.383 -18.077 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.009 4.009 5 N -0.368 5.368 6 C -0.066 4.066 7 C 0.288 3.712 8 O -0.365 6.365 9 C -0.095 4.095 10 C -0.244 4.244 11 C -0.125 4.125 12 N -0.127 5.127 13 N -0.153 5.153 14 C -0.040 4.040 15 C -0.058 4.058 16 N -0.297 5.297 17 C -0.084 4.084 18 C 0.227 3.773 19 O -0.457 6.457 20 N -0.205 5.205 21 C -0.426 4.426 22 H 0.118 0.882 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.194 0.806 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.191 0.809 44 H 0.180 0.820 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.934 -2.360 -17.119 17.972 hybrid contribution 0.570 1.908 0.582 2.075 sum 5.504 -0.452 -16.538 17.435 Atomic orbital electron populations 1.21747 0.94244 1.02638 1.01011 1.21920 0.96255 0.95616 0.90675 0.94404 1.21694 0.79444 1.02827 0.96972 1.48005 1.06727 1.21831 1.60202 1.21794 0.95657 0.90669 0.98446 1.20935 0.91104 0.81394 0.77736 1.90839 1.64338 1.38364 1.42955 1.19876 0.91876 0.96068 1.01664 1.19286 1.16311 0.95860 0.92913 1.23577 0.99048 0.90872 0.99052 1.77256 1.25297 1.21213 0.88937 1.48338 1.53464 1.06771 1.06740 1.21883 1.01755 1.00420 0.79964 1.22389 0.98148 0.87672 0.97562 1.60188 1.36307 1.31001 1.02156 1.21732 1.00847 0.93883 0.91894 1.19869 0.84725 0.88268 0.84419 1.90553 1.54622 1.15885 1.84648 1.41863 1.58317 1.12389 1.07944 1.19613 1.39841 0.96284 0.86895 0.88162 1.25227 0.97864 0.95760 0.99102 1.69607 1.48938 1.08827 1.27147 0.85953 0.79303 0.78892 0.80256 1.20047 1.20989 1.19936 0.91713 0.92395 0.92955 0.90257 0.89007 0.92561 0.91223 0.90897 0.88542 0.88699 0.80629 0.90975 0.88884 0.89466 0.80873 0.82048 0.94651 0.89916 0.77587 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.41 37.16 0.35 -1.33 16 2 C 0.07 0.90 2.95 -67.71 -0.20 0.70 16 3 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16 4 C 0.11 1.31 5.20 -4.04 -0.02 1.29 16 5 N -0.63 -7.08 2.66 -181.58 -0.48 -7.56 16 6 C 0.08 0.54 10.25 59.84 0.61 1.16 16 7 C 0.50 7.09 6.05 -10.98 -0.07 7.02 16 8 O -0.49 -9.51 14.18 5.56 0.08 -9.43 16 9 C -0.05 -0.60 4.74 -29.03 -0.14 -0.74 16 10 C -0.23 -3.31 4.59 -105.05 -0.48 -3.79 16 11 C 0.06 0.87 11.96 -17.36 -0.21 0.66 16 12 N -0.31 -4.93 12.58 30.62 0.39 -4.54 16 13 N -0.37 -5.73 4.01 -68.16 -0.27 -6.01 16 14 C 0.10 1.19 11.47 59.85 0.69 1.88 16 15 C 0.09 1.39 11.40 -17.22 -0.20 1.20 16 16 N -0.66 -12.09 5.82 -107.99 -0.63 -12.71 16 17 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 18 C 0.44 10.86 7.82 -10.98 -0.09 10.77 16 19 O -0.57 -16.20 15.78 5.55 0.09 -16.11 16 20 N -0.57 -14.62 5.29 -10.97 -0.06 -14.68 16 21 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.09 1.27 7.43 -51.93 -0.39 0.88 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 37 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.09 0.93 7.39 -51.93 -0.38 0.55 16 39 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 44 H 0.35 6.96 4.16 -39.29 -0.16 6.80 16 45 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 46 H 0.08 1.48 7.44 -51.93 -0.39 1.09 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -37.31 399.97 -6.52 -43.83 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -7.34 Total: 17.35 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.02 Total: 11.75 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.33 Total: -69.42 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: 0.17 Total: -25.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.31 -6.52 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331402931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.300 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds