Wall clock time and date at job start Tue Mar 31 2020 19:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46834 * 2 1 4 4 C 1.53003 * 109.47125 * 119.99435 * 2 1 3 5 5 N 1.46492 * 109.47210 * 176.70336 * 4 2 1 6 6 C 1.46504 * 120.00322 * 83.69497 * 5 4 2 7 7 C 1.34780 * 120.00242 * 263.70068 * 5 4 2 8 8 O 1.21284 * 119.99520 * 0.02562 * 7 5 4 9 9 C 1.50693 * 120.00379 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47264 * 180.02562 * 9 7 5 11 11 C 1.39862 * 126.04207 * 90.03081 * 10 9 7 12 12 N 1.30838 * 108.20804 * 179.97438 * 11 10 9 13 13 N 1.40087 * 108.20148 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03691 * 180.02562 * 13 12 11 15 15 C 1.34947 * 107.92725 * 359.75837 * 13 12 11 16 16 N 1.46893 * 109.47470 * 239.99903 * 2 1 3 17 17 C 1.46900 * 111.00581 * 78.68699 * 16 2 1 18 18 C 1.50700 * 109.47726 * 180.02562 * 17 16 2 19 19 O 1.21294 * 119.99258 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99657 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99861 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00146 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00319 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99669 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47198 * 89.99819 * 25 23 21 27 27 H 1.48497 * 109.47264 * 209.99917 * 25 23 21 28 28 H 1.48502 * 109.47420 * 330.00006 * 25 23 21 29 29 H 1.09002 * 109.46976 * 60.00421 * 1 2 3 30 30 H 1.08992 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47290 * 300.00831 * 1 2 3 32 32 H 1.09001 * 109.46600 * 56.70219 * 4 2 1 33 33 H 1.09002 * 109.46806 * 296.70440 * 4 2 1 34 34 H 1.08996 * 109.47355 * 265.10557 * 6 5 4 35 35 H 1.08998 * 109.46661 * 25.10733 * 6 5 4 36 36 H 1.09001 * 109.46860 * 145.09705 * 6 5 4 37 37 H 1.09002 * 109.47622 * 300.00205 * 9 7 5 38 38 H 1.09004 * 109.46904 * 60.00399 * 9 7 5 39 39 H 1.08001 * 125.90107 * 359.97438 * 11 10 9 40 40 H 1.09006 * 109.46984 * 89.97422 * 14 13 12 41 41 H 1.08999 * 109.46796 * 209.97416 * 14 13 12 42 42 H 1.09003 * 109.46690 * 329.97742 * 14 13 12 43 43 H 1.08001 * 126.12959 * 180.23678 * 15 13 12 44 44 H 1.00896 * 111.00132 * 202.64835 * 16 2 1 45 45 H 1.09003 * 109.46983 * 300.00726 * 17 16 2 46 46 H 1.09000 * 109.46720 * 59.99884 * 17 16 2 47 47 H 0.96992 * 120.00101 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5028 -0.7903 1.2103 6 6 4.3026 0.3449 1.6772 7 6 4.1129 -1.8983 0.7447 8 8 3.4508 -2.8378 0.3576 9 6 5.6176 -1.9692 0.7040 10 6 6.0427 -3.3027 0.1453 11 6 6.2677 -3.5957 -1.2037 12 7 6.6221 -4.8519 -1.2956 13 7 6.6344 -5.3985 -0.0058 14 6 6.9769 -6.7800 0.3415 15 6 6.2809 -4.4264 0.8608 16 7 2.0197 -0.6925 -1.1993 17 6 1.9417 0.1790 -2.3793 18 6 2.4508 -0.5642 -3.5874 19 8 2.8399 -1.7076 -3.4764 20 7 2.4727 0.0413 -4.7913 21 6 2.9363 -0.6347 -5.8902 22 1 3.2836 -1.6525 -5.7912 23 6 2.9595 -0.0103 -7.1313 24 7 3.4034 -0.6584 -8.1847 25 14 2.3595 1.7505 -7.3023 26 1 3.4950 2.6833 -7.0889 27 1 1.8013 1.9533 -8.6634 28 1 1.3050 2.0147 -6.2905 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.6292 -1.7303 1.2794 33 1 1.7257 -0.1742 2.1383 34 1 4.5678 0.9759 0.8290 35 1 3.7241 0.9258 2.3955 36 1 5.2109 -0.0227 2.1549 37 1 6.0021 -1.1706 0.0695 38 1 6.0142 -1.8546 1.7129 39 1 6.1664 -2.9046 -2.0273 40 1 8.0476 -6.8518 0.5326 41 1 6.4276 -7.0767 1.2350 42 1 6.7102 -7.4391 -0.4847 43 1 6.1995 -4.5278 1.9329 44 1 2.9599 -1.0321 -1.0622 45 1 0.9056 0.4745 -2.5449 46 1 2.5511 1.0677 -2.2155 47 1 2.1611 0.9556 -4.8801 48 1 3.4198 -0.2223 -9.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331402932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:08 Heat of formation + Delta-G solvation = 27.681180 kcal Electronic energy + Delta-G solvation = -29908.415987 eV Core-core repulsion = 25808.143872 eV Total energy + Delta-G solvation = -4100.272115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14443 -39.91106 -38.34227 -36.70739 -34.88610 -33.83558 -33.58315 -31.84515 -31.56515 -30.85031 -28.53764 -27.52829 -26.50533 -26.33251 -24.92672 -23.64781 -21.00140 -20.85337 -20.16170 -19.33339 -19.03975 -18.25188 -17.07762 -16.84927 -16.44294 -16.09375 -15.54732 -15.27792 -15.20584 -14.86182 -14.52092 -14.27637 -13.83203 -13.72078 -13.45724 -13.23294 -13.08698 -12.90544 -12.78430 -12.69346 -12.56617 -12.50401 -12.38374 -12.11570 -11.94727 -11.91762 -11.78235 -11.50816 -11.40692 -11.15732 -10.85980 -10.53229 -10.42007 -9.89113 -9.67297 -9.47829 -9.25694 -8.72100 -8.41390 -8.28596 -8.09069 -7.96038 -6.22308 -3.73120 1.98660 2.61464 2.75146 2.80561 3.08273 3.11425 3.18111 3.19667 3.85814 4.16583 4.21193 4.51916 4.67179 4.79388 4.85330 4.88137 4.93040 5.03693 5.05696 5.11310 5.24450 5.26641 5.27633 5.30750 5.31987 5.38937 5.42687 5.46150 5.67818 5.69496 5.76865 5.82031 5.88644 5.94027 6.03293 6.04619 6.16486 6.30111 6.48910 6.80834 7.07987 7.28346 7.35502 7.68124 7.79420 7.86123 8.24939 8.32483 8.70134 9.05199 9.52209 9.94668 10.91129 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.003624 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.079826 B = 7725.296322 C =10086.939247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.037 0.963 4 C 0.115 3.885 5 N -0.630 5.630 6 C 0.079 3.921 7 C 0.504 3.496 8 O -0.498 6.498 9 C -0.055 4.055 10 C -0.221 4.221 11 C 0.076 3.924 12 N -0.294 5.294 13 N -0.381 5.381 14 C 0.105 3.895 15 C 0.063 3.937 16 N -0.655 5.655 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.554 6.554 20 N -0.594 5.594 21 C -0.301 4.301 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.884 5.884 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.185 0.815 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.167 0.833 44 H 0.352 0.648 45 H 0.085 0.915 46 H 0.038 0.962 47 H 0.369 0.631 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 2.692 26.196 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 H 0.054 0.946 4 C -0.008 4.008 5 N -0.367 5.367 6 C -0.065 4.065 7 C 0.291 3.709 8 O -0.370 6.370 9 C -0.096 4.096 10 C -0.233 4.233 11 C -0.111 4.111 12 N -0.115 5.115 13 N -0.163 5.163 14 C -0.037 4.037 15 C -0.083 4.083 16 N -0.292 5.292 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.435 6.435 20 N -0.235 5.235 21 C -0.430 4.430 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.524 5.524 25 Si 0.706 3.294 26 H -0.198 1.198 27 H -0.203 1.203 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.202 0.798 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.185 0.815 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.056 0.944 47 H 0.201 0.799 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.822 -0.093 24.956 25.247 hybrid contribution -0.079 2.916 0.328 2.935 sum 3.743 2.823 25.283 25.714 Atomic orbital electron populations 1.21758 0.94147 1.02803 1.01108 1.21906 0.96206 0.95454 0.90849 0.94558 1.21674 0.79315 1.03146 0.96637 1.47968 1.06692 1.16521 1.65473 1.21784 0.96097 0.88997 0.99613 1.20867 0.90756 0.82025 0.77238 1.90819 1.66312 1.35918 1.43920 1.19899 0.91779 0.95695 1.02267 1.19371 1.14788 0.95784 0.93406 1.23862 0.96905 0.93369 0.96926 1.77442 1.24714 1.10416 0.98891 1.48409 1.53406 1.09663 1.04793 1.21784 1.01191 0.78481 1.02246 1.22111 1.00956 0.88658 0.96575 1.60081 1.31578 1.36794 1.00712 1.21762 1.01360 0.94054 0.91426 1.19757 0.84716 0.88147 0.83850 1.90614 1.50376 1.17701 1.84796 1.42208 1.59015 1.14239 1.07993 1.19444 1.38511 1.00638 0.84424 0.86291 1.25019 0.97761 0.98238 0.95208 1.69625 1.46060 1.37074 0.99643 0.86684 0.79258 0.85026 0.78480 1.19760 1.20270 1.19538 0.92414 0.91552 0.92803 0.88634 0.90479 0.92720 0.91030 0.91058 0.88276 0.88821 0.79848 0.91074 0.89820 0.89309 0.81535 0.82509 0.89659 0.94377 0.79863 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.34 37.16 0.35 -1.24 16 2 C 0.07 0.84 2.92 -67.71 -0.20 0.65 16 3 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 4 C 0.12 1.26 5.22 -4.04 -0.02 1.24 16 5 N -0.63 -6.65 2.52 -181.57 -0.46 -7.11 16 6 C 0.08 0.50 10.19 59.85 0.61 1.11 16 7 C 0.50 6.80 6.11 -10.99 -0.07 6.73 16 8 O -0.50 -9.27 14.83 5.55 0.08 -9.19 16 9 C -0.06 -0.59 4.80 -29.04 -0.14 -0.73 16 10 C -0.22 -3.04 4.59 -105.05 -0.48 -3.52 16 11 C 0.08 1.27 11.96 -17.37 -0.21 1.07 16 12 N -0.29 -5.10 12.58 30.62 0.39 -4.72 16 13 N -0.38 -5.13 4.01 -68.15 -0.27 -5.40 16 14 C 0.10 0.89 11.47 59.85 0.69 1.57 16 15 C 0.06 0.77 11.40 -17.22 -0.20 0.57 16 16 N -0.66 -11.54 5.91 -107.99 -0.64 -12.17 16 17 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 18 C 0.45 10.90 7.82 -10.99 -0.09 10.81 16 19 O -0.55 -15.97 15.78 5.55 0.09 -15.88 16 20 N -0.59 -14.81 5.09 -10.96 -0.06 -14.87 16 21 C -0.30 -8.85 10.16 -14.93 -0.15 -9.00 16 22 H 0.12 4.01 7.39 -52.49 -0.39 3.62 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.58 13.96 55.50 0.77 -25.80 16 25 Si 0.88 19.94 27.74 -169.99 -4.71 15.22 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -5.61 6.52 56.52 0.37 -5.24 16 29 H 0.06 0.68 7.09 -51.93 -0.37 0.31 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 1.28 7.24 -51.93 -0.38 0.91 16 33 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.33 7.91 -51.93 -0.41 -0.08 16 36 H 0.07 0.32 6.64 -51.93 -0.34 -0.02 16 37 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.09 0.66 7.41 -51.93 -0.38 0.28 16 39 H 0.18 3.09 8.06 -52.49 -0.42 2.67 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.35 6.73 5.18 -39.29 -0.20 6.53 16 45 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 46 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 47 H 0.37 8.07 5.76 -40.82 -0.24 7.84 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -40.41 397.58 -6.14 -46.55 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -7.29 Total: 16.25 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.03 Total: 11.13 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.27 Total: -70.07 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.17 Total: -25.07 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.41 -6.14 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331402932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.232 kcal (2) G-P(sol) polarization free energy of solvation -40.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds