Wall clock time and date at job start Tue Mar 31 2020 19:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46834 * 2 1 4 4 C 1.53003 * 109.47125 * 119.99435 * 2 1 3 5 5 N 1.46492 * 109.47210 * 176.70336 * 4 2 1 6 6 C 1.46504 * 120.00322 * 83.69497 * 5 4 2 7 7 C 1.34780 * 120.00242 * 263.70068 * 5 4 2 8 8 O 1.21284 * 119.99520 * 0.02562 * 7 5 4 9 9 C 1.50693 * 120.00379 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47264 * 180.02562 * 9 7 5 11 11 C 1.39862 * 126.04207 * 90.03081 * 10 9 7 12 12 N 1.30838 * 108.20804 * 179.97438 * 11 10 9 13 13 N 1.40087 * 108.20148 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03691 * 180.02562 * 13 12 11 15 15 C 1.34947 * 107.92725 * 359.75837 * 13 12 11 16 16 N 1.46893 * 109.47470 * 239.99903 * 2 1 3 17 17 C 1.46900 * 111.00581 * 78.68699 * 16 2 1 18 18 C 1.50700 * 109.47726 * 180.02562 * 17 16 2 19 19 O 1.21294 * 119.99258 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99657 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99861 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00146 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00319 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99669 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47198 * 89.99819 * 25 23 21 27 27 H 1.48497 * 109.47264 * 209.99917 * 25 23 21 28 28 H 1.48502 * 109.47420 * 330.00006 * 25 23 21 29 29 H 1.09002 * 109.46976 * 60.00421 * 1 2 3 30 30 H 1.08992 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47290 * 300.00831 * 1 2 3 32 32 H 1.09001 * 109.46600 * 56.70219 * 4 2 1 33 33 H 1.09002 * 109.46806 * 296.70440 * 4 2 1 34 34 H 1.08996 * 109.47355 * 265.10557 * 6 5 4 35 35 H 1.08998 * 109.46661 * 25.10733 * 6 5 4 36 36 H 1.09001 * 109.46860 * 145.09705 * 6 5 4 37 37 H 1.09002 * 109.47622 * 300.00205 * 9 7 5 38 38 H 1.09004 * 109.46904 * 60.00399 * 9 7 5 39 39 H 1.08001 * 125.90107 * 359.97438 * 11 10 9 40 40 H 1.09006 * 109.46984 * 89.97422 * 14 13 12 41 41 H 1.08999 * 109.46796 * 209.97416 * 14 13 12 42 42 H 1.09003 * 109.46690 * 329.97742 * 14 13 12 43 43 H 1.08001 * 126.12959 * 180.23678 * 15 13 12 44 44 H 1.00896 * 111.00132 * 202.64835 * 16 2 1 45 45 H 1.09003 * 109.46983 * 300.00726 * 17 16 2 46 46 H 1.09000 * 109.46720 * 59.99884 * 17 16 2 47 47 H 0.96992 * 120.00101 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5028 -0.7903 1.2103 6 6 4.3026 0.3449 1.6772 7 6 4.1129 -1.8983 0.7447 8 8 3.4508 -2.8378 0.3576 9 6 5.6176 -1.9692 0.7040 10 6 6.0427 -3.3027 0.1453 11 6 6.2677 -3.5957 -1.2037 12 7 6.6221 -4.8519 -1.2956 13 7 6.6344 -5.3985 -0.0058 14 6 6.9769 -6.7800 0.3415 15 6 6.2809 -4.4264 0.8608 16 7 2.0197 -0.6925 -1.1993 17 6 1.9417 0.1790 -2.3793 18 6 2.4508 -0.5642 -3.5874 19 8 2.8399 -1.7076 -3.4764 20 7 2.4727 0.0413 -4.7913 21 6 2.9363 -0.6347 -5.8902 22 1 3.2836 -1.6525 -5.7912 23 6 2.9595 -0.0103 -7.1313 24 7 3.4034 -0.6584 -8.1847 25 14 2.3595 1.7505 -7.3023 26 1 3.4950 2.6833 -7.0889 27 1 1.8013 1.9533 -8.6634 28 1 1.3050 2.0147 -6.2905 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.6292 -1.7303 1.2794 33 1 1.7257 -0.1742 2.1383 34 1 4.5678 0.9759 0.8290 35 1 3.7241 0.9258 2.3955 36 1 5.2109 -0.0227 2.1549 37 1 6.0021 -1.1706 0.0695 38 1 6.0142 -1.8546 1.7129 39 1 6.1664 -2.9046 -2.0273 40 1 8.0476 -6.8518 0.5326 41 1 6.4276 -7.0767 1.2350 42 1 6.7102 -7.4391 -0.4847 43 1 6.1995 -4.5278 1.9329 44 1 2.9599 -1.0321 -1.0622 45 1 0.9056 0.4745 -2.5449 46 1 2.5511 1.0677 -2.2155 47 1 2.1611 0.9556 -4.8801 48 1 3.4198 -0.2223 -9.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331402932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:07 Heat of formation + Delta-G solvation = -5.946101 kcal Electronic energy + Delta-G solvation = -29909.874176 eV Core-core repulsion = 25808.143872 eV Total energy + Delta-G solvation = -4101.730304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18428 -40.91994 -40.20877 -37.88399 -36.13044 -35.72317 -34.53951 -33.77097 -32.87190 -32.02412 -29.44070 -28.35875 -28.03673 -27.20653 -25.97847 -25.35049 -22.06962 -21.87976 -21.31122 -21.16027 -20.35412 -19.91163 -18.00492 -17.96837 -17.72085 -17.28436 -16.86117 -16.61216 -16.43842 -16.17463 -15.86663 -15.49486 -15.33787 -14.94501 -14.67503 -14.43033 -14.29618 -14.14326 -14.06812 -13.79708 -13.59603 -13.42175 -13.39965 -13.25922 -13.10005 -12.95129 -12.85971 -12.69945 -12.55171 -12.43629 -12.30109 -11.98444 -11.90944 -11.52366 -11.50559 -10.72583 -10.43917 -10.35373 -10.25996 -9.54297 -9.29840 -9.23450 -8.41950 -6.03378 0.97327 1.28496 1.34403 1.43733 1.67810 1.75699 1.82574 1.94664 2.22325 2.31456 2.74659 3.13786 3.41183 3.64009 3.88299 3.97364 3.98842 4.12583 4.22833 4.28582 4.29054 4.36983 4.41112 4.43194 4.45716 4.52436 4.55249 4.61877 4.65904 4.76625 4.80872 4.90201 4.92610 4.97480 5.06901 5.12648 5.17392 5.42282 5.52603 5.63917 5.71013 5.91178 6.15782 6.21046 6.42599 6.54516 6.59596 6.73530 6.87514 7.38360 7.40474 7.97113 8.76254 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.003624 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.079826 B = 7725.296322 C =10086.939247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.062 0.938 4 C 0.116 3.884 5 N -0.623 5.623 6 C 0.070 3.930 7 C 0.498 3.502 8 O -0.563 6.563 9 C -0.049 4.049 10 C -0.235 4.235 11 C 0.042 3.958 12 N -0.347 5.347 13 N -0.382 5.382 14 C 0.093 3.907 15 C 0.074 3.926 16 N -0.685 5.685 17 C 0.062 3.938 18 C 0.445 3.555 19 O -0.612 6.612 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.049 0.951 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.969 3.031 26 H -0.253 1.253 27 H -0.274 1.274 28 H -0.232 1.232 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.215 0.785 44 H 0.340 0.660 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 6.905 30.083 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.044 4.044 3 H 0.080 0.920 4 C -0.007 4.007 5 N -0.358 5.358 6 C -0.072 4.072 7 C 0.287 3.713 8 O -0.441 6.441 9 C -0.089 4.089 10 C -0.247 4.247 11 C -0.143 4.143 12 N -0.169 5.169 13 N -0.164 5.164 14 C -0.046 4.046 15 C -0.073 4.073 16 N -0.321 5.321 17 C -0.070 4.070 18 C 0.232 3.768 19 O -0.495 6.495 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.067 0.933 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.178 1.178 27 H -0.199 1.199 28 H -0.155 1.155 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.097 0.903 43 H 0.232 0.768 44 H 0.161 0.839 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.990 4.182 28.885 29.339 hybrid contribution 0.220 1.442 -0.833 1.680 sum 3.210 5.624 28.052 28.789 Atomic orbital electron populations 1.21761 0.93262 1.01790 1.02697 1.22099 0.96823 0.96285 0.89196 0.91980 1.21709 0.79585 1.01788 0.97604 1.48046 1.06925 1.16713 1.64091 1.22115 0.96981 0.87773 1.00311 1.21364 0.91691 0.81970 0.76267 1.90794 1.67709 1.38562 1.47001 1.19987 0.90001 0.94211 1.04723 1.19738 1.14940 0.98068 0.91967 1.23792 0.98685 0.93487 0.98308 1.77299 1.26654 1.11023 1.01918 1.48810 1.52485 1.11389 1.03714 1.22190 1.03247 0.76019 1.03171 1.22843 0.98698 0.87458 0.98316 1.60091 1.31154 1.38309 1.02514 1.21672 1.02822 0.93992 0.88541 1.21073 0.82712 0.87753 0.85222 1.90600 1.52371 1.20713 1.85858 1.41996 1.59172 1.14900 1.07120 1.18982 1.40952 0.98843 0.87117 0.93305 1.26165 0.96867 1.04786 0.93625 1.69820 1.46951 1.40220 1.00652 0.85316 0.79989 0.76374 0.79494 1.17751 1.19890 1.15545 0.92797 0.93905 0.89178 0.91963 0.86110 0.92744 0.88333 0.88772 0.87591 0.84210 0.82324 0.88788 0.86467 0.90279 0.76842 0.83872 0.87189 0.90784 0.77476 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.34 71.98 0.67 -2.06 16 2 C 0.07 1.48 2.92 44.92 0.13 1.61 16 3 H 0.06 1.11 7.91 -2.38 -0.02 1.09 16 4 C 0.12 2.26 5.22 86.38 0.45 2.71 16 5 N -0.62 -11.65 2.52 -846.76 -2.14 -13.79 16 6 C 0.07 0.59 10.19 127.77 1.30 1.90 16 7 C 0.50 13.24 6.11 87.65 0.54 13.77 16 8 O -0.56 -22.01 14.83 -3.04 -0.05 -22.05 16 9 C -0.05 -0.98 4.80 29.10 0.14 -0.84 16 10 C -0.24 -6.62 4.59 -20.14 -0.09 -6.71 16 11 C 0.04 1.58 11.96 85.23 1.02 2.60 16 12 N -0.35 -13.12 12.58 -57.03 -0.72 -13.84 16 13 N -0.38 -10.46 4.01 -369.54 -1.48 -11.94 16 14 C 0.09 1.52 11.47 127.77 1.47 2.98 16 15 C 0.07 1.72 11.40 83.54 0.95 2.68 16 16 N -0.68 -23.80 5.91 -495.57 -2.93 -26.73 16 17 C 0.06 2.15 5.97 85.56 0.51 2.66 16 18 C 0.44 22.16 7.82 87.66 0.69 22.85 16 19 O -0.61 -37.95 15.78 -3.07 -0.05 -37.99 16 20 N -0.59 -29.78 5.09 -306.99 -1.56 -31.35 16 21 C -0.33 -20.49 10.16 84.04 0.85 -19.64 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 24 N -0.94 -58.75 13.96 21.66 0.30 -58.44 16 25 Si 0.97 40.23 27.74 68.60 1.90 42.14 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 H -0.23 -8.18 6.52 99.48 0.65 -7.53 16 29 H 0.05 1.11 7.09 -2.39 -0.02 1.09 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.66 7.24 -2.39 -0.02 1.65 16 33 H 0.12 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.35 7.91 -2.39 -0.02 0.34 16 36 H 0.09 0.39 6.64 -2.39 -0.02 0.38 16 37 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 38 H 0.14 1.43 7.41 -2.38 -0.02 1.42 16 39 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 40 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.34 13.29 5.18 -89.70 -0.46 12.82 16 45 H 0.11 3.29 7.05 -2.39 -0.02 3.27 16 46 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 47 H 0.39 16.19 5.76 -92.71 -0.53 15.65 16 48 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -102.45 397.58 2.31 -100.14 By element: Atomic # 1 Polarization: 49.88 SS G_CDS: -0.07 Total: 49.81 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 9.09 Total: 24.03 kcal Atomic # 7 Polarization: -147.55 SS G_CDS: -8.52 Total: -156.08 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.09 Total: -60.05 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.90 Total: 42.14 kcal Total: -102.45 2.31 -100.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331402932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.196 kcal (2) G-P(sol) polarization free energy of solvation -102.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds