Wall clock time and date at job start Tue Mar 31 2020 19:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.53007 * 109.46851 * 240.00137 * 2 1 3 5 5 N 1.46497 * 109.46911 * 185.00139 * 4 2 1 6 6 C 1.46502 * 120.00159 * 269.99651 * 5 4 2 7 7 C 1.34780 * 119.99937 * 90.00000 * 5 4 2 8 8 O 1.21589 * 120.00479 * 3.49013 * 7 5 4 9 9 C 1.47530 * 119.99463 * 183.76201 * 7 5 4 10 10 C 1.36597 * 125.76448 * 173.05488 * 9 7 5 11 11 N 1.34812 * 106.83740 * 179.83996 * 10 9 7 12 12 C 1.46500 * 126.59510 * 180.14859 * 11 10 9 13 13 C 1.53173 * 109.54527 * 35.11784 * 12 11 10 14 14 C 1.53107 * 109.15925 * 183.24123 * 13 12 11 15 15 O 1.42902 * 109.48537 * 57.46874 * 14 13 12 16 16 C 1.42902 * 114.10219 * 298.89317 * 15 14 13 17 17 C 1.53092 * 109.41735 * 61.15661 * 16 15 14 18 18 N 1.40207 * 106.81189 * 0.41567 * 11 10 9 19 19 N 1.28761 * 108.36485 * 359.73595 * 18 11 10 20 20 N 1.46499 * 109.47369 * 120.00329 * 2 1 3 21 21 C 1.36943 * 119.99944 * 275.00018 * 20 2 1 22 22 H 1.08003 * 119.99619 * 359.97438 * 21 20 2 23 23 C 1.38807 * 120.00035 * 179.97438 * 21 20 2 24 24 N 1.31623 * 120.00231 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99873 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46840 * 60.00424 * 25 23 21 27 27 H 1.48498 * 109.46963 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47407 * 300.00034 * 25 23 21 29 29 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46481 * 299.99771 * 1 2 3 31 31 H 1.09000 * 109.47205 * 59.99684 * 1 2 3 32 32 H 1.08993 * 109.46987 * 64.99638 * 4 2 1 33 33 H 1.09001 * 109.46945 * 305.00014 * 4 2 1 34 34 H 1.08994 * 109.47128 * 264.16631 * 6 5 4 35 35 H 1.08997 * 109.46744 * 24.16151 * 6 5 4 36 36 H 1.08994 * 109.47300 * 144.15776 * 6 5 4 37 37 H 1.08000 * 126.58187 * 359.96675 * 10 9 7 38 38 H 1.09006 * 109.54131 * 155.29171 * 12 11 10 39 39 H 1.09004 * 109.52135 * 303.05572 * 13 12 11 40 40 H 1.08997 * 109.52401 * 63.24172 * 13 12 11 41 41 H 1.08998 * 109.40438 * 297.49140 * 14 13 12 42 42 H 1.08993 * 109.48075 * 177.49838 * 14 13 12 43 43 H 1.09006 * 109.47692 * 301.17221 * 16 15 14 44 44 H 1.08999 * 109.47853 * 181.14183 * 16 15 14 45 45 H 1.08997 * 109.52417 * 182.49289 * 17 16 15 46 46 H 1.09000 * 109.57306 * 62.32633 * 17 16 15 47 47 H 0.97000 * 120.00200 * 94.99865 * 20 2 1 48 48 H 0.96999 * 120.00200 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7614 7 6 4.0756 -1.8988 -0.6117 8 8 3.3851 -2.8086 -0.1948 9 6 5.5434 -1.9658 -0.4783 10 6 6.2403 -2.9239 0.2017 11 7 7.5475 -2.6202 0.0742 12 6 8.6764 -3.3672 0.6345 13 6 8.3600 -4.8657 0.6139 14 6 9.5097 -5.6312 1.2746 15 8 9.6994 -5.1499 2.6067 16 6 10.0450 -3.7655 2.6833 17 6 8.9159 -2.9249 2.0813 18 7 7.6188 -1.4485 -0.6925 19 7 6.4205 -1.0915 -1.0002 20 7 2.0184 -0.6907 1.1961 21 6 2.1492 -0.0076 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6114 -0.6621 3.5092 24 7 2.9236 -1.9394 3.4503 25 14 2.7905 0.2700 5.1182 26 1 1.4684 0.8077 5.5285 27 1 3.2983 -0.6488 6.1685 28 1 3.7465 1.3917 4.9367 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7515 -0.1584 -2.1370 33 1 1.6053 -1.7198 -1.2952 34 1 4.6283 -0.0406 -2.7744 35 1 3.7700 1.1661 -1.7869 36 1 5.2253 0.3654 -1.1474 37 1 5.8240 -3.7645 0.7369 38 1 9.5708 -3.1752 0.0417 39 1 7.4373 -5.0508 1.1640 40 1 8.2435 -5.1993 -0.4172 41 1 10.4233 -5.4795 0.6998 42 1 9.2699 -6.6940 1.3027 43 1 10.9657 -3.5894 2.1269 44 1 10.1910 -3.4845 3.7263 45 1 9.1968 -1.8719 2.0986 46 1 8.0045 -3.0685 2.6617 47 1 2.2491 -1.6318 1.1525 48 1 3.2469 -2.3967 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331614571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:40 Heat of formation + Delta-G solvation = 43.588668 kcal Electronic energy + Delta-G solvation = -30672.021074 eV Core-core repulsion = 26572.438759 eV Total energy + Delta-G solvation = -4099.582315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09414 -39.72892 -38.98923 -35.87080 -35.58125 -34.20625 -31.96476 -31.69552 -31.50631 -30.52757 -28.56669 -26.90374 -25.97977 -25.33505 -24.13758 -23.57791 -22.64412 -22.28434 -20.38217 -20.06321 -19.19244 -17.70038 -17.07730 -16.53519 -16.42129 -15.91515 -15.75518 -15.48427 -15.18252 -14.90077 -14.60590 -14.53944 -14.01681 -13.98809 -13.68615 -13.37854 -12.89902 -12.79753 -12.47644 -12.33433 -12.13377 -12.10033 -11.90999 -11.87343 -11.81695 -11.52527 -11.33048 -11.22794 -10.91487 -10.77142 -10.64707 -10.51582 -10.28448 -10.17221 -10.06057 -9.95692 -9.52339 -9.38092 -8.96513 -8.78431 -7.94515 -6.76637 -5.58759 -2.87127 1.36045 2.04949 2.09830 3.44311 3.47039 3.48994 3.53069 3.53962 3.93422 3.95567 4.17898 4.40318 4.45164 4.49672 4.69340 4.71109 4.81164 4.87413 5.05262 5.10833 5.24609 5.26979 5.27512 5.42147 5.50855 5.52803 5.65972 5.66398 5.68342 5.76703 5.78545 5.91497 6.03165 6.11834 6.17236 6.36439 6.43784 6.50953 6.55112 6.74889 6.75408 6.90445 7.07060 7.25437 7.81116 7.91532 8.17553 8.58301 8.81123 9.70652 10.33937 10.72547 11.61833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004040 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.921695 B = 6929.523830 C = 8658.768619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.080 3.920 7 C 0.611 3.389 8 O -0.520 6.520 9 C -0.080 4.080 10 C 0.102 3.898 11 N -0.360 5.360 12 C 0.155 3.845 13 C -0.173 4.173 14 C 0.068 3.932 15 O -0.378 6.378 16 C 0.068 3.932 17 C -0.172 4.172 18 N -0.082 5.082 19 N -0.205 5.205 20 N -0.721 5.721 21 C -0.234 4.234 22 H 0.064 0.936 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.289 1.289 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.201 0.799 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.397 0.603 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.151 -4.762 -9.884 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.013 4.013 5 N -0.326 5.326 6 C -0.064 4.064 7 C 0.396 3.604 8 O -0.395 6.395 9 C -0.219 4.219 10 C -0.054 4.054 11 N -0.145 5.145 12 C 0.053 3.947 13 C -0.212 4.212 14 C -0.009 4.009 15 O -0.296 6.296 16 C -0.010 4.010 17 C -0.211 4.211 18 N -0.061 5.061 19 N -0.079 5.079 20 N -0.366 5.366 21 C -0.366 4.366 22 H 0.082 0.918 23 C -0.209 4.209 24 N -0.571 5.571 25 Si 0.729 3.271 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.217 1.217 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.218 0.782 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.235 0.765 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.742 -4.242 -9.998 18.310 hybrid contribution -0.447 -0.064 1.319 1.394 sum 14.295 -4.305 -8.678 17.269 Atomic orbital electron populations 1.22400 0.99040 1.00993 0.99928 1.20662 0.92003 0.95657 0.87489 0.93803 1.21883 0.78891 1.02206 0.98303 1.47307 1.06735 1.20714 1.57827 1.22036 0.96202 0.89686 0.98427 1.16578 0.83995 0.82430 0.77384 1.90795 1.62615 1.38135 1.47920 1.21484 0.95857 0.96732 1.07850 1.23278 0.83260 1.00803 0.98042 1.50496 1.06018 1.20674 1.37332 1.21535 0.87325 0.90600 0.95225 1.22725 1.02175 0.92634 1.03622 1.22543 0.96026 0.98934 0.83410 1.88010 1.90160 1.24779 1.26630 1.22578 0.95175 0.80741 1.02479 1.22731 1.02227 1.01906 0.94223 1.81884 1.15315 0.97294 1.11591 1.74668 0.96460 1.20517 1.16207 1.42659 1.77639 1.11619 1.04685 1.19171 1.36174 0.93591 0.87644 0.91781 1.24690 1.02720 0.95912 0.97590 1.69729 1.50875 1.08283 1.28202 0.86414 0.77702 0.78613 0.84339 1.21415 1.21852 1.21659 0.93331 0.92675 0.94572 0.90905 0.90105 0.93354 0.91931 0.88870 0.78188 0.87079 0.89060 0.89290 0.92554 0.87640 0.92531 0.87717 0.89342 0.89267 0.76499 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.49 37.16 0.35 -2.71 16 2 C 0.15 3.22 3.20 -67.93 -0.22 3.00 16 3 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.99 5.12 -4.04 -0.02 1.97 16 5 N -0.59 -11.14 2.77 -182.82 -0.51 -11.65 16 6 C 0.08 1.25 9.61 59.85 0.57 1.83 16 7 C 0.61 12.80 6.87 -12.47 -0.09 12.71 16 8 O -0.52 -12.41 14.39 5.29 0.08 -12.34 16 9 C -0.08 -1.50 6.70 -83.55 -0.56 -2.06 16 10 C 0.10 1.65 10.40 -16.84 -0.18 1.48 16 11 N -0.36 -4.96 3.55 -54.38 -0.19 -5.15 16 12 C 0.16 1.51 3.31 -67.75 -0.22 1.28 16 13 C -0.17 -1.39 5.15 -26.59 -0.14 -1.53 16 14 C 0.07 0.47 6.84 37.21 0.25 0.72 16 15 O -0.38 -3.57 10.77 -35.23 -0.38 -3.95 16 16 C 0.07 0.53 6.84 37.21 0.25 0.79 16 17 C -0.17 -1.69 5.75 -26.59 -0.15 -1.85 16 18 N -0.08 -1.32 13.78 60.35 0.83 -0.49 16 19 N -0.21 -3.59 8.80 32.85 0.29 -3.30 16 20 N -0.72 -19.18 4.52 -53.42 -0.24 -19.42 16 21 C -0.23 -6.79 9.93 -15.06 -0.15 -6.94 16 22 H 0.06 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.92 -28.70 13.06 55.49 0.72 -27.98 16 25 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.08 1.54 7.38 -51.93 -0.38 1.16 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.09 1.61 5.27 -51.93 -0.27 1.33 16 37 H 0.20 3.01 7.27 -52.49 -0.38 2.63 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.85 7.09 -51.93 -0.37 0.48 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.40 11.43 5.17 -40.82 -0.21 11.22 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -36.02 387.43 -6.46 -42.47 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.49 Total: 9.61 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.38 Total: 8.21 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.90 Total: -67.99 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.30 Total: -16.29 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.02 -6.46 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331614571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.062 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds