Wall clock time and date at job start Tue Mar 31 2020 19:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.53007 * 109.46851 * 240.00137 * 2 1 3 5 5 N 1.46497 * 109.46911 * 185.00139 * 4 2 1 6 6 C 1.46502 * 120.00159 * 269.99651 * 5 4 2 7 7 C 1.34780 * 119.99937 * 90.00000 * 5 4 2 8 8 O 1.21589 * 120.00479 * 3.49013 * 7 5 4 9 9 C 1.47530 * 119.99463 * 183.76201 * 7 5 4 10 10 C 1.36597 * 125.76448 * 173.05488 * 9 7 5 11 11 N 1.34812 * 106.83740 * 179.83996 * 10 9 7 12 12 C 1.46500 * 126.59510 * 180.14859 * 11 10 9 13 13 C 1.53173 * 109.54527 * 35.11784 * 12 11 10 14 14 C 1.53107 * 109.15925 * 183.24123 * 13 12 11 15 15 O 1.42902 * 109.48537 * 57.46874 * 14 13 12 16 16 C 1.42902 * 114.10219 * 298.89317 * 15 14 13 17 17 C 1.53092 * 109.41735 * 61.15661 * 16 15 14 18 18 N 1.40207 * 106.81189 * 0.41567 * 11 10 9 19 19 N 1.28761 * 108.36485 * 359.73595 * 18 11 10 20 20 N 1.46499 * 109.47369 * 120.00329 * 2 1 3 21 21 C 1.36943 * 119.99944 * 275.00018 * 20 2 1 22 22 H 1.08003 * 119.99619 * 359.97438 * 21 20 2 23 23 C 1.38807 * 120.00035 * 179.97438 * 21 20 2 24 24 N 1.31623 * 120.00231 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99873 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46840 * 60.00424 * 25 23 21 27 27 H 1.48498 * 109.46963 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47407 * 300.00034 * 25 23 21 29 29 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46481 * 299.99771 * 1 2 3 31 31 H 1.09000 * 109.47205 * 59.99684 * 1 2 3 32 32 H 1.08993 * 109.46987 * 64.99638 * 4 2 1 33 33 H 1.09001 * 109.46945 * 305.00014 * 4 2 1 34 34 H 1.08994 * 109.47128 * 264.16631 * 6 5 4 35 35 H 1.08997 * 109.46744 * 24.16151 * 6 5 4 36 36 H 1.08994 * 109.47300 * 144.15776 * 6 5 4 37 37 H 1.08000 * 126.58187 * 359.96675 * 10 9 7 38 38 H 1.09006 * 109.54131 * 155.29171 * 12 11 10 39 39 H 1.09004 * 109.52135 * 303.05572 * 13 12 11 40 40 H 1.08997 * 109.52401 * 63.24172 * 13 12 11 41 41 H 1.08998 * 109.40438 * 297.49140 * 14 13 12 42 42 H 1.08993 * 109.48075 * 177.49838 * 14 13 12 43 43 H 1.09006 * 109.47692 * 301.17221 * 16 15 14 44 44 H 1.08999 * 109.47853 * 181.14183 * 16 15 14 45 45 H 1.08997 * 109.52417 * 182.49289 * 17 16 15 46 46 H 1.09000 * 109.57306 * 62.32633 * 17 16 15 47 47 H 0.97000 * 120.00200 * 94.99865 * 20 2 1 48 48 H 0.96999 * 120.00200 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7614 7 6 4.0756 -1.8988 -0.6117 8 8 3.3851 -2.8086 -0.1948 9 6 5.5434 -1.9658 -0.4783 10 6 6.2403 -2.9239 0.2017 11 7 7.5475 -2.6202 0.0742 12 6 8.6764 -3.3672 0.6345 13 6 8.3600 -4.8657 0.6139 14 6 9.5097 -5.6312 1.2746 15 8 9.6994 -5.1499 2.6067 16 6 10.0450 -3.7655 2.6833 17 6 8.9159 -2.9249 2.0813 18 7 7.6188 -1.4485 -0.6925 19 7 6.4205 -1.0915 -1.0002 20 7 2.0184 -0.6907 1.1961 21 6 2.1492 -0.0076 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6114 -0.6621 3.5092 24 7 2.9236 -1.9394 3.4503 25 14 2.7905 0.2700 5.1182 26 1 1.4684 0.8077 5.5285 27 1 3.2983 -0.6488 6.1685 28 1 3.7465 1.3917 4.9367 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7515 -0.1584 -2.1370 33 1 1.6053 -1.7198 -1.2952 34 1 4.6283 -0.0406 -2.7744 35 1 3.7700 1.1661 -1.7869 36 1 5.2253 0.3654 -1.1474 37 1 5.8240 -3.7645 0.7369 38 1 9.5708 -3.1752 0.0417 39 1 7.4373 -5.0508 1.1640 40 1 8.2435 -5.1993 -0.4172 41 1 10.4233 -5.4795 0.6998 42 1 9.2699 -6.6940 1.3027 43 1 10.9657 -3.5894 2.1269 44 1 10.1910 -3.4845 3.7263 45 1 9.1968 -1.8719 2.0986 46 1 8.0045 -3.0685 2.6617 47 1 2.2491 -1.6318 1.1525 48 1 3.2469 -2.3967 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331614571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:39 Heat of formation + Delta-G solvation = 17.766891 kcal Electronic energy + Delta-G solvation = -30673.140790 eV Core-core repulsion = 26572.438759 eV Total energy + Delta-G solvation = -4100.702031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.34749 -40.72226 -40.25198 -37.57242 -36.57216 -35.86581 -33.90012 -32.67910 -32.28059 -31.87546 -30.51644 -28.26234 -27.23360 -26.42888 -25.68046 -24.83998 -23.94383 -23.38121 -21.67496 -21.20921 -20.65557 -19.33094 -18.68299 -17.51409 -17.35193 -17.30419 -16.95181 -16.80745 -16.41130 -16.15254 -15.88741 -15.72645 -15.51995 -15.17311 -14.90719 -14.81065 -14.49227 -14.04754 -13.76408 -13.63956 -13.54300 -13.51060 -13.29669 -13.04142 -12.81673 -12.78337 -12.73290 -12.56731 -12.47611 -12.27669 -12.20011 -11.99713 -11.75782 -11.57836 -11.49305 -11.21380 -11.02773 -10.88395 -10.75245 -10.31497 -9.44512 -8.88839 -7.83564 -5.11855 0.09400 0.68381 0.96116 1.41383 1.44601 1.50124 2.03690 2.45366 2.57322 2.86642 3.09795 3.18370 3.41403 3.45335 3.60622 3.73242 3.77425 3.91868 4.00673 4.09235 4.12547 4.19386 4.21177 4.39703 4.43626 4.47704 4.53641 4.56299 4.62032 4.65858 4.74019 4.76662 4.84171 4.87069 4.92997 4.95257 5.03223 5.11640 5.20836 5.30264 5.40685 5.49986 5.56388 5.78293 6.16506 6.35243 6.44718 6.85229 7.27348 7.43525 8.27063 8.51342 9.37577 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004040 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.921695 B = 6929.523830 C = 8658.768619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.045 0.955 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.080 3.920 7 C 0.600 3.400 8 O -0.563 6.563 9 C -0.108 4.108 10 C 0.102 3.898 11 N -0.342 5.342 12 C 0.146 3.854 13 C -0.168 4.168 14 C 0.068 3.932 15 O -0.400 6.400 16 C 0.072 3.928 17 C -0.169 4.169 18 N -0.084 5.084 19 N -0.209 5.209 20 N -0.737 5.737 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.075 4.075 24 N -0.957 5.957 25 Si 0.962 3.038 26 H -0.279 1.279 27 H -0.297 1.297 28 H -0.283 1.283 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.204 0.796 38 H 0.139 0.861 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.384 0.616 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.452 -3.803 -11.128 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.009 4.009 5 N -0.325 5.325 6 C -0.063 4.063 7 C 0.386 3.614 8 O -0.441 6.441 9 C -0.247 4.247 10 C -0.056 4.056 11 N -0.127 5.127 12 C 0.046 3.954 13 C -0.207 4.207 14 C -0.009 4.009 15 O -0.319 6.319 16 C -0.006 4.006 17 C -0.208 4.208 18 N -0.064 5.064 19 N -0.082 5.082 20 N -0.381 5.381 21 C -0.368 4.368 22 H 0.086 0.914 23 C -0.267 4.267 24 N -0.608 5.608 25 Si 0.792 3.208 26 H -0.205 1.205 27 H -0.223 1.223 28 H -0.210 1.210 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.220 0.780 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.220 0.780 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.047 -3.219 -11.288 19.882 hybrid contribution -0.815 -0.335 1.641 1.863 sum 15.231 -3.554 -9.647 18.376 Atomic orbital electron populations 1.22229 0.97056 1.00755 1.01203 1.20984 0.93334 0.95436 0.86811 0.93680 1.21919 0.78517 1.01798 0.98616 1.47483 1.07362 1.20668 1.57022 1.22165 0.95488 0.89674 0.98944 1.16981 0.84841 0.82527 0.77002 1.90754 1.63709 1.39737 1.49885 1.21421 0.95334 0.98218 1.09723 1.23329 0.84180 1.00503 0.97560 1.50770 1.06164 1.19818 1.35977 1.22035 0.86832 0.91205 0.95292 1.22737 1.02107 0.91486 1.04385 1.22727 0.96417 0.99207 0.82522 1.87987 1.90300 1.25345 1.28282 1.22647 0.95074 0.79761 1.03076 1.22706 1.01789 1.02341 0.93959 1.81771 1.14829 0.97988 1.11767 1.74656 0.96503 1.20462 1.16618 1.42894 1.78085 1.11274 1.05827 1.19540 1.34700 0.93826 0.88733 0.91371 1.25454 1.03572 0.96822 1.00888 1.69915 1.52488 1.09822 1.28566 0.85389 0.77834 0.77300 0.80312 1.20537 1.22293 1.21003 0.94331 0.94577 0.90024 0.85998 0.91575 0.91101 0.89808 0.90523 0.77951 0.84323 0.90964 0.87919 0.89904 0.86413 0.89691 0.87349 0.89628 0.92428 0.78003 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.49 71.98 0.68 -4.81 16 2 C 0.14 5.91 3.20 44.99 0.14 6.06 16 3 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 4 C 0.11 3.96 5.12 86.38 0.44 4.40 16 5 N -0.59 -22.01 2.77 -850.57 -2.36 -24.37 16 6 C 0.08 2.37 9.61 127.77 1.23 3.60 16 7 C 0.60 25.84 6.87 86.69 0.60 26.43 16 8 O -0.56 -28.16 14.39 -4.00 -0.06 -28.22 16 9 C -0.11 -4.15 6.70 40.82 0.27 -3.87 16 10 C 0.10 3.41 10.40 83.85 0.87 4.28 16 11 N -0.34 -9.37 3.55 -325.97 -1.16 -10.53 16 12 C 0.15 2.67 3.31 45.11 0.15 2.82 16 13 C -0.17 -2.53 5.15 30.69 0.16 -2.37 16 14 C 0.07 0.79 6.84 72.02 0.49 1.28 16 15 O -0.40 -7.00 10.77 -148.98 -1.60 -8.61 16 16 C 0.07 1.02 6.84 72.01 0.49 1.51 16 17 C -0.17 -3.27 5.75 30.69 0.18 -3.09 16 18 N -0.08 -2.66 13.78 37.02 0.51 -2.15 16 19 N -0.21 -7.31 8.80 -49.99 -0.44 -7.75 16 20 N -0.74 -39.84 4.52 -322.93 -1.46 -41.30 16 21 C -0.24 -13.82 9.93 84.03 0.83 -12.99 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 24 N -0.96 -61.54 13.06 21.65 0.28 -61.26 16 25 Si 0.96 48.46 29.55 68.60 2.03 50.49 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 3.00 8.07 -2.39 -0.02 2.98 16 33 H 0.07 2.51 7.38 -2.39 -0.02 2.49 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 36 H 0.08 2.59 5.27 -2.39 -0.01 2.58 16 37 H 0.20 6.57 7.27 -2.91 -0.02 6.55 16 38 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 1.38 7.09 -2.38 -0.02 1.36 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.38 22.87 5.17 -92.71 -0.48 22.39 16 48 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.70 387.43 3.24 -77.46 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.49 Total: 37.06 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 7.01 Total: 19.19 kcal Atomic # 7 Polarization: -142.74 SS G_CDS: -4.62 Total: -147.37 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.66 Total: -36.83 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -80.70 3.24 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331614571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.224 kcal (2) G-P(sol) polarization free energy of solvation -80.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds