Wall clock time and date at job start Tue Mar 31 2020 19:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46922 * 2 1 4 4 C 1.52999 * 109.47185 * 120.00415 * 2 1 3 5 5 N 1.46499 * 109.46872 * 175.00188 * 4 2 1 6 6 C 1.46505 * 119.99766 * 269.99436 * 5 4 2 7 7 C 1.34773 * 120.00124 * 90.00163 * 5 4 2 8 8 O 1.21590 * 120.00027 * 3.22524 * 7 5 4 9 9 C 1.47528 * 120.00095 * 183.22745 * 7 5 4 10 10 C 1.36588 * 125.77400 * 173.25494 * 9 7 5 11 11 N 1.34808 * 106.84364 * 180.13827 * 10 9 7 12 12 C 1.46504 * 126.59843 * 179.90826 * 11 10 9 13 13 C 1.53183 * 109.53903 * 274.71425 * 12 11 10 14 14 C 1.53098 * 109.15952 * 176.84795 * 13 12 11 15 15 O 1.42907 * 109.41246 * 302.38782 * 14 13 12 16 16 C 1.42905 * 114.09559 * 61.15908 * 15 14 13 17 17 C 1.53088 * 109.41537 * 298.84111 * 16 15 14 18 18 N 1.40217 * 106.80863 * 359.64721 * 11 10 9 19 19 N 1.28763 * 108.36643 * 0.22531 * 18 11 10 20 20 N 1.46506 * 109.47026 * 240.00445 * 2 1 3 21 21 C 1.36938 * 119.99892 * 84.99658 * 20 2 1 22 22 H 1.07994 * 120.00074 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99604 * 179.97438 * 21 20 2 24 24 N 1.31624 * 120.00133 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99956 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47206 * 60.00120 * 25 23 21 27 27 H 1.48496 * 109.47216 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47028 * 300.00105 * 25 23 21 29 29 H 1.09002 * 109.47070 * 59.99638 * 1 2 3 30 30 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46895 * 299.99667 * 1 2 3 32 32 H 1.09000 * 109.47023 * 54.99537 * 4 2 1 33 33 H 1.09004 * 109.46872 * 295.00076 * 4 2 1 34 34 H 1.08999 * 109.47217 * 263.96272 * 6 5 4 35 35 H 1.08997 * 109.46850 * 23.96126 * 6 5 4 36 36 H 1.09003 * 109.47103 * 143.95949 * 6 5 4 37 37 H 1.08005 * 126.57989 * 0.02562 * 10 9 7 38 38 H 1.08993 * 109.54503 * 154.53569 * 12 11 10 39 39 H 1.08993 * 109.52294 * 56.94310 * 13 12 11 40 40 H 1.08998 * 109.57535 * 296.77769 * 13 12 11 41 41 H 1.08993 * 109.47991 * 182.40501 * 14 13 12 42 42 H 1.08998 * 109.48205 * 62.36791 * 14 13 12 43 43 H 1.09003 * 109.48394 * 58.82672 * 16 15 14 44 44 H 1.09005 * 109.48140 * 178.85811 * 16 15 14 45 45 H 1.09004 * 109.52408 * 297.70248 * 17 16 15 46 46 H 1.09008 * 109.57358 * 177.54858 * 17 16 15 47 47 H 0.97002 * 119.99461 * 265.00314 * 20 2 1 48 48 H 0.97002 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5610 7 6 4.2676 0.1491 1.7155 8 8 3.7497 1.0875 2.2897 9 6 5.7361 0.0785 1.5936 10 6 6.6159 1.0559 1.9629 11 7 7.8515 0.5953 1.6829 12 6 9.1172 1.2986 1.9059 13 6 9.4150 2.2089 0.7105 14 6 10.6976 2.9980 0.9870 15 8 10.5431 3.7478 2.1937 16 6 10.3095 2.9458 3.3532 17 6 9.0115 2.1547 3.1717 18 7 7.6928 -0.6889 1.1427 19 7 6.4347 -0.9605 1.1049 20 7 2.0184 -0.6905 -1.1963 21 6 2.1491 -0.0073 -2.3758 22 1 1.8926 1.0406 -2.4241 23 6 2.6123 -0.6615 -3.5091 24 7 2.9254 -1.9386 -3.4500 25 14 2.7913 0.2706 -5.1180 26 1 3.7464 1.3930 -4.9362 27 1 3.3001 -0.6478 -6.1681 28 1 1.4690 0.8073 -5.5288 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 4.3801 -2.7254 1.3262 35 1 3.4314 -2.4365 -0.1518 36 1 5.0317 -1.6812 0.0404 37 1 6.3690 2.0146 2.3945 38 1 9.9222 0.5729 2.0211 39 1 8.5859 2.9011 0.5643 40 1 9.5463 1.6031 -0.1861 41 1 10.8913 3.6788 0.1582 42 1 11.5338 2.3069 1.0931 43 1 11.1407 2.2540 3.4902 44 1 10.2237 3.5891 4.2289 45 1 8.1741 2.8458 3.0751 46 1 8.8533 1.5093 4.0358 47 1 2.2490 -1.6317 -1.1527 48 1 3.2487 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331614574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:42 Heat of formation + Delta-G solvation = 43.499750 kcal Electronic energy + Delta-G solvation = -30088.105469 eV Core-core repulsion = 25988.519299 eV Total energy + Delta-G solvation = -4099.586171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.26954 -39.89620 -39.13319 -36.23649 -35.74220 -34.10050 -32.08636 -31.86704 -31.66201 -30.71471 -28.74937 -26.81143 -26.07154 -25.48238 -24.30894 -23.68587 -22.71687 -22.43231 -20.57388 -20.25391 -19.34679 -17.72413 -17.19683 -16.69244 -16.59675 -16.15436 -15.91502 -15.59857 -15.31559 -14.99768 -14.89371 -14.52051 -14.17807 -14.10659 -13.86227 -13.42496 -13.18300 -13.03088 -12.44709 -12.30475 -12.15658 -12.07523 -12.05327 -11.99337 -11.90967 -11.67870 -11.37801 -11.23490 -11.06037 -10.81165 -10.66592 -10.62799 -10.36905 -10.29940 -10.17911 -9.98890 -9.70347 -9.51438 -9.19512 -8.86316 -8.03639 -6.87722 -5.70833 -2.97528 1.15834 1.88037 1.91882 3.28805 3.36350 3.46925 3.51389 3.52206 3.65827 3.78375 4.00800 4.23249 4.25663 4.33738 4.55164 4.63936 4.64674 4.71576 4.85578 4.94749 5.02382 5.09518 5.10901 5.23800 5.34482 5.44905 5.50167 5.59673 5.62364 5.70460 5.77901 5.93923 6.03048 6.15834 6.21655 6.31726 6.34377 6.43918 6.58480 6.67262 6.83848 6.91556 6.96369 7.22609 7.75466 7.81664 8.04275 8.48531 8.54291 9.59475 10.16462 10.52108 11.52023 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.003172 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.702941 B = 8825.777310 C =10077.256765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.051 0.949 4 C 0.110 3.890 5 N -0.576 5.576 6 C 0.081 3.919 7 C 0.600 3.400 8 O -0.554 6.554 9 C -0.085 4.085 10 C 0.088 3.912 11 N -0.360 5.360 12 C 0.153 3.847 13 C -0.171 4.171 14 C 0.066 3.934 15 O -0.379 6.379 16 C 0.067 3.933 17 C -0.171 4.171 18 N -0.073 5.073 19 N -0.192 5.192 20 N -0.720 5.720 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.199 0.801 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.382 0.618 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 6.548 15.796 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.014 4.014 5 N -0.305 5.305 6 C -0.062 4.062 7 C 0.386 3.614 8 O -0.433 6.433 9 C -0.224 4.224 10 C -0.068 4.068 11 N -0.145 5.145 12 C 0.051 3.949 13 C -0.210 4.210 14 C -0.011 4.011 15 O -0.297 6.297 16 C -0.010 4.010 17 C -0.210 4.210 18 N -0.052 5.052 19 N -0.065 5.065 20 N -0.363 5.363 21 C -0.363 4.363 22 H 0.085 0.915 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.216 0.784 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.720 6.089 15.374 22.815 hybrid contribution -0.313 0.654 -0.818 1.093 sum 15.406 6.743 14.556 22.242 Atomic orbital electron populations 1.22370 0.98767 1.00865 1.00238 1.20660 0.92003 0.96220 0.86756 0.93144 1.21917 0.78446 1.01443 0.99558 1.47414 1.06565 1.21006 1.55519 1.22186 1.00388 0.86488 0.97136 1.16750 0.83420 0.82360 0.78875 1.90744 1.73627 1.33727 1.45161 1.21508 0.96214 0.93308 1.11372 1.23175 0.83888 1.00897 0.98838 1.50595 1.06439 1.14150 1.43300 1.21573 0.82970 0.94009 0.96355 1.22722 1.00782 0.99313 0.98134 1.22595 0.95035 0.95625 0.87836 1.88004 1.92285 1.33662 1.15738 1.22557 0.94523 0.94719 0.89209 1.22713 1.01491 0.99807 0.96995 1.82014 1.11536 0.93498 1.18139 1.74856 0.98201 1.22566 1.10921 1.42459 1.78143 1.10489 1.05182 1.19164 1.36057 0.93738 0.87322 0.91543 1.24658 1.02428 0.95973 0.97795 1.69622 1.51247 1.08510 1.28832 0.86327 0.77690 0.78601 0.83929 1.21578 1.21762 1.21400 0.92588 0.93437 0.94291 0.90700 0.89970 0.93672 0.89925 0.88738 0.78414 0.86848 0.89659 0.89119 0.87646 0.92344 0.92377 0.87612 0.89333 0.89216 0.78246 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.49 37.16 0.35 -2.64 16 2 C 0.15 3.22 3.20 -67.92 -0.22 3.00 16 3 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 4 C 0.11 1.96 5.05 -4.04 -0.02 1.94 16 5 N -0.58 -10.82 2.73 -182.81 -0.50 -11.32 16 6 C 0.08 1.50 9.09 59.85 0.54 2.05 16 7 C 0.60 11.36 7.67 -12.47 -0.10 11.27 16 8 O -0.55 -11.17 16.43 5.29 0.09 -11.09 16 9 C -0.09 -1.44 6.69 -83.55 -0.56 -1.99 16 10 C 0.09 1.16 10.40 -16.84 -0.18 0.99 16 11 N -0.36 -4.29 3.55 -54.39 -0.19 -4.48 16 12 C 0.15 1.19 3.32 -67.75 -0.23 0.97 16 13 C -0.17 -1.29 5.75 -26.59 -0.15 -1.44 16 14 C 0.07 0.39 6.84 37.21 0.25 0.65 16 15 O -0.38 -2.77 10.77 -35.23 -0.38 -3.15 16 16 C 0.07 0.33 6.84 37.20 0.25 0.59 16 17 C -0.17 -0.99 5.13 -26.60 -0.14 -1.13 16 18 N -0.07 -1.13 13.78 60.35 0.83 -0.29 16 19 N -0.19 -3.33 8.82 32.85 0.29 -3.04 16 20 N -0.72 -17.95 4.57 -53.42 -0.24 -18.20 16 21 C -0.23 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 25 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.08 1.39 7.38 -51.93 -0.38 1.01 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.66 5.79 -51.93 -0.30 1.36 16 36 H 0.09 1.91 5.34 -51.93 -0.28 1.64 16 37 H 0.20 2.05 7.26 -52.48 -0.38 1.67 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.55 7.07 -51.93 -0.37 0.18 16 46 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.38 9.85 5.41 -40.82 -0.22 9.63 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -34.27 387.72 -6.37 -40.64 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.39 Total: 7.26 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.42 Total: 7.14 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: 0.91 Total: -64.47 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.29 Total: -14.24 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.27 -6.37 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331614574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.143 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds