Wall clock time and date at job start Tue Mar 31 2020 20:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.36738 * 127.13780 * 90.02483 * 3 2 1 5 5 C 1.50694 * 126.34627 * 0.02562 * 4 3 2 6 6 C 1.52998 * 109.47664 * 90.00224 * 5 4 3 7 7 C 1.50694 * 109.47664 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99673 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00524 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00475 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99849 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47235 * 90.00049 * 11 9 7 13 13 H 1.48499 * 109.47426 * 210.00286 * 11 9 7 14 14 H 1.48504 * 109.47165 * 330.00149 * 11 9 7 15 15 N 1.30289 * 107.30279 * 179.97438 * 4 3 2 16 16 N 1.28530 * 110.06008 * 359.97438 * 15 4 3 17 17 C 1.31225 * 109.85138 * 359.74431 * 16 15 4 18 18 N 1.38581 * 126.46605 * 180.25953 * 17 16 15 19 19 C 1.48536 * 110.99694 * 242.77120 * 18 17 16 20 20 C 1.54936 * 103.22600 * 159.72438 * 19 18 17 21 21 C 1.54597 * 102.92379 * 322.58665 * 20 19 18 22 22 H 1.08998 * 110.31114 * 263.04729 * 21 20 19 23 23 N 1.46504 * 110.30997 * 140.86970 * 21 20 19 24 24 C 1.34780 * 119.99667 * 89.28739 * 23 21 20 25 25 O 1.21517 * 119.99905 * 0.02562 * 24 23 21 26 26 O 1.34625 * 119.99944 * 179.97438 * 24 23 21 27 27 C 1.45204 * 117.00053 * 179.97438 * 26 24 23 28 28 C 1.47902 * 111.00466 * 0.16864 * 18 17 16 29 29 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 34 34 H 1.09008 * 109.47133 * 210.00102 * 5 4 3 35 35 H 1.09002 * 109.47582 * 329.99602 * 5 4 3 36 36 H 1.09008 * 109.46746 * 300.00115 * 6 5 4 37 37 H 1.08998 * 109.47465 * 59.99461 * 6 5 4 38 38 H 0.97000 * 120.00389 * 179.97438 * 10 9 7 39 39 H 1.08999 * 110.67095 * 278.15701 * 19 18 17 40 40 H 1.09002 * 110.66749 * 41.29228 * 19 18 17 41 41 H 1.09000 * 110.72721 * 204.23102 * 20 19 18 42 42 H 1.09002 * 110.87936 * 81.01937 * 20 19 18 43 43 H 0.96990 * 120.00069 * 269.28754 * 23 21 20 44 44 H 1.09002 * 109.47308 * 179.97438 * 27 26 24 45 45 H 1.08991 * 109.47425 * 300.00382 * 27 26 24 46 46 H 1.09009 * 109.46833 * 60.00749 * 27 26 24 47 47 H 1.08991 * 109.91578 * 333.51292 * 28 18 17 48 48 H 1.08998 * 109.91095 * 94.60594 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2939 2.1594 1.0901 5 6 2.1523 1.7552 2.5348 6 6 3.4644 1.1381 3.0229 7 6 3.3226 0.7332 4.4675 8 1 2.3898 0.8998 4.9859 9 6 4.3834 0.1502 5.1275 10 7 4.2597 -0.2027 6.3883 11 14 5.9964 -0.1386 4.2308 12 1 6.8717 1.0502 4.3912 13 1 6.6727 -1.3317 4.8003 14 1 5.7272 -0.3640 2.7878 15 7 2.7028 3.3148 0.6480 16 7 2.7048 3.3195 -0.6373 17 6 2.2990 2.1557 -1.0878 18 7 2.1754 1.7847 -2.4173 19 6 0.7622 1.4758 -2.7544 20 6 0.7287 1.6090 -4.2977 21 6 1.6717 2.8051 -4.5621 22 1 1.0954 3.7232 -4.6764 23 7 2.4816 2.5595 -5.7579 24 6 2.0260 2.9357 -6.9693 25 8 0.9436 3.4789 -7.0695 26 8 2.7704 2.7104 -8.0682 27 6 2.2166 3.1415 -9.3393 28 6 2.5717 2.8909 -3.3154 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.9178 2.6333 3.1366 35 1 1.3493 1.0243 2.6306 36 1 3.6989 0.2599 2.4211 37 1 4.2674 1.8689 2.9272 38 1 5.0059 -0.6132 6.8525 39 1 0.5071 0.4607 -2.4503 40 1 0.0895 2.1978 -2.2913 41 1 -0.2809 1.8300 -4.6440 42 1 1.1090 0.7053 -4.7739 43 1 3.3456 2.1262 -5.6779 44 1 2.9157 2.9014 -10.1404 45 1 1.2709 2.6293 -9.5161 46 1 2.0477 4.2182 -9.3156 47 1 2.4223 3.8474 -2.8147 48 1 3.6179 2.7807 -3.6008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352737777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:03 Heat of formation + Delta-G solvation = -12.089580 kcal Electronic energy + Delta-G solvation = -29475.649794 eV Core-core repulsion = 25373.653089 eV Total energy + Delta-G solvation = -4101.996705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.08113 -41.65332 -40.23283 -37.64108 -36.91283 -36.18533 -35.55193 -33.90715 -32.48630 -31.44300 -30.00643 -29.83851 -28.12786 -27.27901 -25.04908 -24.07372 -23.44209 -22.94130 -22.01853 -21.53555 -21.20014 -19.84673 -19.04684 -18.51084 -18.23941 -17.63599 -17.43258 -17.02778 -16.67552 -16.30530 -15.82117 -15.48708 -15.16427 -15.01925 -14.95690 -14.87836 -14.59563 -14.43654 -14.05362 -13.98039 -13.66131 -13.50405 -13.28031 -13.07418 -12.97012 -12.94562 -12.79128 -12.45480 -12.30300 -12.14441 -12.08542 -12.00834 -11.81150 -11.79722 -11.74649 -11.47005 -11.42891 -11.17304 -10.79002 -10.74853 -10.34828 -9.38625 -8.30529 -6.34383 0.72654 1.07553 1.26799 1.33334 1.35994 1.45213 1.67117 1.76005 2.33249 2.59138 3.04801 3.13299 3.27024 3.38548 3.50241 3.66206 3.91857 4.00600 4.02011 4.02800 4.12454 4.19323 4.33284 4.35185 4.38327 4.40789 4.51827 4.55778 4.61418 4.67166 4.70211 4.76350 4.79779 4.80307 4.90594 4.96527 5.07192 5.18054 5.20017 5.28355 5.35657 5.38364 5.42357 5.46012 5.60858 6.12025 6.23934 6.30310 6.72582 7.22757 7.30221 7.71963 8.85266 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.002229 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.136147 B =12561.478594 C =12998.469803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 N -0.470 5.470 4 C 0.197 3.803 5 C -0.010 4.010 6 C 0.005 3.995 7 C -0.526 4.526 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.942 5.942 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.254 1.254 15 N -0.328 5.328 16 N -0.355 5.355 17 C 0.345 3.655 18 N -0.424 5.424 19 C 0.033 3.967 20 C -0.122 4.122 21 C 0.161 3.839 22 H 0.098 0.902 23 N -0.687 5.687 24 C 0.646 3.354 25 O -0.604 6.604 26 O -0.375 6.375 27 C 0.049 3.951 28 C 0.044 3.956 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.421 0.579 44 H 0.134 0.866 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -1.076 -31.758 32.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.030 4.030 3 N -0.164 5.164 4 C -0.072 4.072 5 C -0.049 4.049 6 C -0.034 4.034 7 C -0.564 4.564 8 H 0.066 0.934 9 C -0.183 4.183 10 N -0.583 5.583 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.178 1.178 15 N -0.166 5.166 16 N -0.199 5.199 17 C -0.013 4.013 18 N -0.149 5.149 19 C -0.093 4.093 20 C -0.161 4.161 21 C 0.057 3.943 22 H 0.116 0.884 23 N -0.347 5.347 24 C 0.400 3.600 25 O -0.495 6.495 26 O -0.288 6.288 27 C -0.044 4.044 28 C -0.083 4.083 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.259 0.741 44 H 0.152 0.848 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.354 0.070 -31.847 32.685 hybrid contribution 0.381 -0.704 0.506 0.947 sum -6.973 -0.634 -31.341 32.113 Atomic orbital electron populations 1.22326 0.92015 1.05264 1.03081 1.22296 0.97204 0.77130 1.06358 1.46413 1.50592 1.14830 1.04566 1.25182 1.01031 0.88342 0.92667 1.19934 0.99950 1.01806 0.83248 1.19378 0.93704 0.95395 0.94908 1.21292 0.99778 1.39479 0.95828 0.93394 1.25799 1.02233 0.94906 0.95363 1.70022 1.33410 1.43354 1.11472 0.85822 0.79846 0.78047 0.79871 1.20081 1.20433 1.17779 1.73906 1.19996 1.19576 1.03170 1.74362 1.24820 1.17232 1.03527 1.22877 1.01967 0.87804 0.88664 1.61683 1.22060 1.36057 0.95111 1.23746 0.85208 1.03637 0.96698 1.22956 1.00967 0.98848 0.93365 1.21694 0.91110 1.00095 0.81443 0.88426 1.44653 1.24125 1.63418 1.02544 1.18297 0.82045 0.77395 0.82310 1.90993 1.23316 1.48551 1.86670 1.86262 1.48679 1.77505 1.16394 1.23498 1.00994 1.00500 0.79454 1.23082 1.01353 0.92989 0.90900 0.92822 0.90894 0.87389 0.88429 0.86373 0.89583 0.88708 0.96119 0.97479 0.92376 0.86416 0.92659 0.88593 0.88293 0.74114 0.84791 0.91848 0.92159 0.90634 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.88 71.98 0.71 -1.78 16 2 C 0.09 1.83 5.82 86.38 0.50 2.33 16 3 N -0.47 -13.51 2.81 -514.85 -1.45 -14.96 16 4 C 0.20 7.18 7.32 137.64 1.01 8.18 16 5 C -0.01 -0.37 5.36 29.85 0.16 -0.21 16 6 C 0.00 0.22 4.02 29.85 0.12 0.34 16 7 C -0.53 -29.06 9.66 25.60 0.25 -28.82 16 8 H 0.05 2.85 7.99 -2.91 -0.02 2.82 16 9 C 0.01 0.85 5.47 84.65 0.46 1.32 16 10 N -0.94 -57.46 13.96 21.44 0.30 -57.16 16 11 Si 0.94 44.27 27.47 68.60 1.88 46.15 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 15 N -0.33 -13.40 12.18 -49.55 -0.60 -14.00 16 16 N -0.36 -12.89 10.70 -58.00 -0.62 -13.51 16 17 C 0.34 9.92 7.04 260.11 1.83 11.75 16 18 N -0.42 -8.47 5.32 -693.50 -3.69 -12.16 16 19 C 0.03 0.47 4.88 86.65 0.42 0.89 16 20 C -0.12 -1.40 6.78 31.80 0.22 -1.19 16 21 C 0.16 2.33 3.34 45.87 0.15 2.48 16 22 H 0.10 1.68 7.56 -2.39 -0.02 1.66 16 23 N -0.69 -9.17 5.06 -565.92 -2.86 -12.03 16 24 C 0.65 11.61 8.75 129.79 1.14 12.75 16 25 O -0.60 -14.63 15.78 19.79 0.31 -14.32 16 26 O -0.38 -5.59 10.61 -55.34 -0.59 -6.17 16 27 C 0.05 0.46 10.56 113.37 1.20 1.66 16 28 C 0.04 0.80 6.24 86.45 0.54 1.34 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.93 5.24 -2.39 -0.01 0.91 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 2.18 7.88 -2.39 -0.02 2.16 16 33 H 0.12 1.84 7.92 -2.39 -0.02 1.82 16 34 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 35 H 0.09 3.19 7.92 -2.39 -0.02 3.18 16 36 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 37 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.12 1.23 5.71 -2.39 -0.01 1.21 16 40 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.97 8.06 -2.39 -0.02 0.95 16 43 H 0.42 3.95 8.47 -92.72 -0.79 3.17 16 44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.08 1.72 6.84 -2.39 -0.02 1.71 16 48 H 0.11 1.73 7.66 -2.39 -0.02 1.71 16 Total: -1.00 -77.66 388.97 1.53 -76.12 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.14 Total: 11.00 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 8.71 Total: 11.05 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -8.92 Total: -123.83 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.28 Total: -20.49 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -77.66 1.53 -76.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352737777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.033 kcal (2) G-P(sol) polarization free energy of solvation -77.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds