Wall clock time and date at job start Tue Mar 31 2020 19:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46490 * 120.00111 * 0.02562 * 7 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 10 10 C 1.53006 * 109.46992 * 90.00440 * 9 7 5 11 11 N 1.46899 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00022 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47204 * 180.02562 * 12 11 10 14 14 O 1.21295 * 120.00126 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99649 * 180.02562 * 15 13 12 17 17 H 1.07992 * 120.00645 * 359.97438 * 16 15 13 18 18 C 1.38959 * 119.99822 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47234 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47285 * 119.99793 * 20 18 16 23 23 H 1.48504 * 109.46906 * 239.99608 * 20 18 16 24 24 N 1.46500 * 109.46959 * 119.99432 * 2 1 3 25 25 C 1.36878 * 126.39977 * 239.71377 * 24 2 1 26 26 C 1.34666 * 106.81807 * 179.84613 * 25 24 2 27 27 N 1.34122 * 108.02175 * 0.42307 * 26 25 24 28 28 C 1.30499 * 109.25528 * 359.72890 * 27 26 25 29 29 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 31 31 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 33 33 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 34 34 H 1.08995 * 109.47620 * 89.99771 * 8 7 5 35 35 H 1.09006 * 109.47028 * 209.99878 * 8 7 5 36 36 H 1.09002 * 109.47109 * 329.99455 * 8 7 5 37 37 H 1.09000 * 109.47018 * 209.99971 * 9 7 5 38 38 H 1.09000 * 109.47828 * 330.00266 * 9 7 5 39 39 H 1.09000 * 109.46856 * 299.99630 * 10 9 7 40 40 H 1.09002 * 109.47088 * 59.99836 * 10 9 7 41 41 H 1.00900 * 111.00182 * 56.04584 * 11 10 9 42 42 H 1.09006 * 109.46842 * 299.99818 * 12 11 10 43 43 H 1.08992 * 109.47544 * 59.99880 * 12 11 10 44 44 H 0.97000 * 120.00237 * 359.97438 * 15 13 12 45 45 H 0.96994 * 120.00288 * 180.02562 * 19 18 16 46 46 H 1.08006 * 126.58977 * 359.97438 * 25 24 2 47 47 H 1.08006 * 125.98725 * 180.12166 * 26 25 24 48 48 H 1.08003 * 125.64917 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 2.7464 -1.6358 -3.8369 9 6 1.5983 0.3653 -4.8932 10 6 2.6962 1.3746 -5.2354 11 7 2.3083 2.1331 -6.4321 12 6 3.3413 3.1136 -6.7917 13 6 2.9089 3.8712 -8.0206 14 8 1.8450 3.6187 -8.5456 15 7 3.7043 4.8292 -8.5363 16 6 3.3106 5.5186 -9.6539 17 1 2.3634 5.2939 -10.1214 18 6 4.1310 6.5060 -10.1860 19 7 5.2838 6.7792 -9.6175 20 14 3.5950 7.4450 -11.7093 21 1 2.2669 6.9510 -12.1535 22 1 3.5042 8.8929 -11.3919 23 1 4.5880 7.2372 -12.7937 24 7 2.0183 -0.6905 1.1962 25 6 2.8129 -0.1568 2.1747 26 6 3.0184 -1.1293 3.0833 27 7 2.3747 -2.2296 2.6663 28 6 1.7734 -1.9742 1.5366 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 2.0572 -2.4757 -3.9229 35 1 3.3696 -1.5842 -4.7297 36 1 3.3789 -1.7731 -2.9598 37 1 1.4613 -0.3200 -5.7296 38 1 0.6652 0.8948 -4.7008 39 1 2.8331 2.0599 -4.3990 40 1 3.6293 0.8451 -5.4279 41 1 1.4136 2.5811 -6.3020 42 1 3.4829 3.8114 -5.9663 43 1 4.2787 2.5960 -6.9947 44 1 4.5550 5.0314 -8.1163 45 1 5.8563 7.4687 -9.9887 46 1 3.1990 0.8512 2.2120 47 1 3.6034 -1.0403 3.9869 48 1 1.1788 -2.6738 0.9678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481285280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:48 Heat of formation + Delta-G solvation = -26.123883 kcal Electronic energy + Delta-G solvation = -28076.991319 eV Core-core repulsion = 23974.386041 eV Total energy + Delta-G solvation = -4102.605278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02987 -41.15205 -40.17516 -37.76788 -36.57281 -36.23630 -35.72631 -33.30168 -32.21683 -31.10930 -30.11905 -29.06960 -28.06769 -27.08469 -25.65051 -24.32571 -23.18186 -22.26937 -21.38643 -21.09854 -20.07656 -19.86323 -18.71854 -17.95120 -17.50939 -17.27007 -17.05691 -16.79846 -16.49634 -16.15745 -15.93668 -15.57864 -15.40921 -14.96639 -14.89910 -14.79869 -14.58097 -14.37914 -14.13965 -13.96052 -13.81849 -13.79091 -13.54938 -13.39359 -13.17737 -12.94963 -12.87346 -12.73251 -12.44720 -12.41838 -12.28781 -12.11903 -12.07042 -11.53251 -10.97664 -10.89092 -10.59538 -10.41184 -10.03884 -9.74310 -9.44709 -9.43399 -8.48644 -5.97654 1.15327 1.35900 1.41520 1.50900 1.55829 1.60600 2.01833 2.07765 2.25485 2.29025 2.95884 3.18377 3.38627 3.45183 3.58046 3.71587 3.88884 3.98170 4.03196 4.07329 4.14265 4.26529 4.30211 4.40991 4.44660 4.48001 4.48606 4.55684 4.60297 4.69632 4.73467 4.76784 4.82035 4.87283 4.94969 4.98268 5.17735 5.38223 5.39506 5.42097 5.81750 5.83843 6.04086 6.26920 6.29204 6.32432 6.57364 7.07251 7.10340 7.16865 7.53180 8.08193 8.68963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.001583 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.182477 B =17687.154381 C =18077.096458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.099 0.901 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.573 6.573 7 N -0.609 5.609 8 C 0.067 3.933 9 C 0.123 3.877 10 C 0.055 3.945 11 N -0.676 5.676 12 C 0.067 3.933 13 C 0.437 3.563 14 O -0.622 6.622 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.270 1.270 24 N -0.451 5.451 25 C -0.056 4.056 26 C -0.054 4.054 27 N -0.536 5.536 28 C 0.181 3.819 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.086 0.914 41 H 0.344 0.656 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.192 0.808 47 H 0.178 0.822 48 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -19.074 21.606 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.117 0.883 4 C -0.179 4.179 5 C 0.302 3.698 6 O -0.453 6.453 7 N -0.342 5.342 8 C -0.075 4.075 9 C -0.001 4.001 10 C -0.075 4.075 11 N -0.309 5.309 12 C -0.066 4.066 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.209 5.209 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.818 3.182 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.195 1.195 24 N -0.134 5.134 25 C -0.189 4.189 26 C -0.201 4.201 27 N -0.255 5.255 28 C -0.102 4.102 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.209 0.791 47 H 0.195 0.805 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.642 -19.743 21.116 29.029 hybrid contribution 0.256 2.356 -0.312 2.390 sum -2.387 -17.387 20.805 27.218 Atomic orbital electron populations 1.22216 0.92458 1.03676 1.03573 1.21096 0.96082 0.96580 0.81307 0.88285 1.21994 1.04711 1.01300 0.89896 1.20776 0.78667 0.85134 0.85181 1.90723 1.41690 1.26221 1.86696 1.47880 1.55539 1.25549 1.05182 1.22165 0.96426 0.84176 1.04705 1.21251 0.96824 0.94683 0.87323 1.22268 0.99821 0.95831 0.89623 1.60031 1.05115 1.29005 1.36736 1.21516 0.96763 0.94119 0.94165 1.20826 0.85637 0.82852 0.88226 1.90492 1.25823 1.69673 1.64894 1.41931 1.20088 1.32634 1.26294 1.19728 1.05198 1.16306 1.05263 0.90242 1.26060 0.95204 0.97909 1.02072 1.69674 1.11085 1.33217 1.42119 0.84849 0.78264 0.77791 0.77289 1.19767 1.19628 1.19509 1.45804 1.37605 1.11392 1.18586 1.23153 1.01745 1.02083 0.91962 1.22618 1.05357 0.89809 1.02299 1.70284 1.13875 1.29388 1.11978 1.25409 1.03368 0.85832 0.95546 0.92458 0.90123 0.90529 0.85242 0.86537 0.90398 0.89976 0.89005 0.88207 0.91508 0.96067 0.89608 0.83814 0.92153 0.87407 0.76963 0.91257 0.79118 0.80463 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.99 71.98 0.65 -1.29 16 2 C 0.15 1.66 2.70 44.99 0.12 1.79 16 3 H 0.10 1.33 7.90 -2.39 -0.02 1.31 16 4 C -0.14 -1.08 3.73 29.85 0.11 -0.97 16 5 C 0.51 7.84 7.39 87.66 0.65 8.49 16 6 O -0.57 -13.61 13.55 -3.03 -0.04 -13.65 16 7 N -0.61 -8.17 2.87 -846.77 -2.43 -10.61 16 8 C 0.07 0.37 10.24 127.77 1.31 1.68 16 9 C 0.12 2.32 5.67 86.38 0.49 2.81 16 10 C 0.05 1.24 6.01 86.31 0.52 1.76 16 11 N -0.68 -21.04 6.13 -517.92 -3.17 -24.21 16 12 C 0.07 2.30 6.17 85.56 0.53 2.82 16 13 C 0.44 20.90 7.82 87.66 0.69 21.58 16 14 O -0.62 -34.63 15.78 -3.08 -0.05 -34.67 16 15 N -0.57 -29.49 5.29 -306.98 -1.62 -31.11 16 16 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -49.55 13.05 21.67 0.28 -49.27 16 20 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 N -0.45 -5.49 2.62 -506.54 -1.33 -6.82 16 25 C -0.06 -0.76 11.54 83.09 0.96 0.20 16 26 C -0.05 -0.89 11.87 83.52 0.99 0.10 16 27 N -0.54 -10.42 11.25 -200.31 -2.25 -12.67 16 28 C 0.18 2.40 11.65 180.26 2.10 4.50 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.33 5.95 -2.39 -0.01 1.32 16 31 H 0.08 0.64 7.95 -2.39 -0.02 0.62 16 32 H 0.13 0.35 8.05 -2.39 -0.02 0.33 16 33 H 0.12 0.66 7.40 -2.39 -0.02 0.64 16 34 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.08 0.46 8.07 -2.38 -0.02 0.44 16 36 H 0.09 0.16 6.44 -2.39 -0.02 0.15 16 37 H 0.10 1.70 8.07 -2.39 -0.02 1.69 16 38 H 0.07 1.54 7.42 -2.39 -0.02 1.53 16 39 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.34 11.60 8.43 -89.69 -0.76 10.84 16 42 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 47 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 48 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -77.63 402.42 1.29 -76.34 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.51 Total: 36.85 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 10.39 Total: 24.95 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -10.52 Total: -134.69 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.09 Total: -48.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -77.63 1.29 -76.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481285280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.212 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds