Wall clock time and date at job start Tue Mar 31 2020 19:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00193 * 359.97438 * 7 5 4 9 9 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 10 10 C 1.53000 * 109.47320 * 89.99267 * 9 7 5 11 11 N 1.46897 * 109.47134 * 180.02562 * 10 9 7 12 12 C 1.46895 * 111.00171 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47333 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00270 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00054 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00086 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99585 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99936 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99802 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47211 * 90.00280 * 20 18 16 22 22 H 1.48501 * 109.46847 * 209.99838 * 20 18 16 23 23 H 1.48496 * 109.47405 * 329.99960 * 20 18 16 24 24 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 25 25 C 1.36885 * 126.39286 * 120.00096 * 24 2 1 26 26 C 1.34665 * 106.81493 * 179.97438 * 25 24 2 27 27 N 1.34129 * 108.02445 * 0.02562 * 26 25 24 28 28 C 1.30498 * 109.25189 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 31 31 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 33 33 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 34 34 H 1.09003 * 109.46892 * 90.00805 * 8 7 5 35 35 H 1.08997 * 109.47554 * 210.00418 * 8 7 5 36 36 H 1.09003 * 109.47352 * 330.00559 * 8 7 5 37 37 H 1.08994 * 109.46819 * 209.99867 * 9 7 5 38 38 H 1.09001 * 109.46417 * 329.99372 * 9 7 5 39 39 H 1.08996 * 109.47149 * 300.00096 * 10 9 7 40 40 H 1.09004 * 109.46839 * 60.00028 * 10 9 7 41 41 H 1.00901 * 110.99765 * 56.04324 * 11 10 9 42 42 H 1.09005 * 109.47438 * 300.00286 * 12 11 10 43 43 H 1.09005 * 109.47135 * 60.00158 * 12 11 10 44 44 H 0.96996 * 120.00002 * 359.97438 * 15 13 12 45 45 H 0.97002 * 120.00387 * 180.02562 * 19 18 16 46 46 H 1.07999 * 126.59054 * 359.73997 * 25 24 2 47 47 H 1.08008 * 125.98738 * 179.97438 * 26 25 24 48 48 H 1.08006 * 125.64605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 2.7462 -1.6357 3.8371 9 6 1.5980 0.3655 4.8933 10 6 0.2306 -0.1166 5.3817 11 7 -0.1579 0.6428 6.5777 12 6 -1.4686 0.2055 7.0762 13 6 -1.8329 1.0055 8.3003 14 8 -1.0750 1.8560 8.7167 15 7 -3.0005 0.7752 8.9329 16 6 -3.3317 1.5027 10.0468 17 1 -2.6568 2.2599 10.4175 18 6 -4.5357 1.2656 10.6987 19 7 -4.8534 1.9632 11.7661 20 14 -5.7027 -0.0447 10.0578 21 1 -5.3853 -1.3463 10.6983 22 1 -7.1010 0.3376 10.3799 23 1 -5.5495 -0.1669 8.5858 24 7 2.0184 -0.6907 -1.1961 25 6 2.8085 -0.1554 -2.1774 26 6 3.0192 -1.1298 -3.0827 27 7 2.3748 -2.2299 -2.6660 28 6 1.7733 -1.9743 -1.5365 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 3.8131 -1.4129 3.8191 35 1 2.4912 -2.1155 4.7820 36 1 2.5007 -2.3044 3.0121 37 1 2.3391 0.2115 5.6775 38 1 1.5431 1.4263 4.6485 39 1 -0.5104 0.0375 4.5974 40 1 0.2855 -1.1774 5.6264 41 1 -0.1533 1.6348 6.3934 42 1 -2.2217 0.3610 6.3036 43 1 -1.4250 -0.8529 7.3332 44 1 -3.6065 0.0949 8.6001 45 1 -5.6937 1.7976 12.2214 46 1 3.1868 0.8553 -2.2195 47 1 3.6039 -1.0408 -3.9865 48 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481285283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:51 Heat of formation + Delta-G solvation = 5.900959 kcal Electronic energy + Delta-G solvation = -28184.878606 eV Core-core repulsion = 24083.662029 eV Total energy + Delta-G solvation = -4101.216577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50556 -40.54328 -38.52677 -36.97876 -35.90977 -35.19996 -33.91135 -31.73178 -31.59194 -30.31755 -29.57242 -28.45254 -27.28960 -25.97359 -24.18733 -23.47949 -22.28441 -21.73097 -20.79030 -19.60074 -19.32623 -18.40190 -18.17428 -16.93144 -16.79984 -16.42906 -15.99501 -15.67418 -15.52810 -15.17200 -14.93844 -14.50128 -14.29248 -14.15369 -14.00502 -13.76978 -13.67805 -13.58807 -13.35198 -13.29988 -13.10662 -12.85938 -12.50649 -12.46970 -12.26318 -12.09043 -11.94382 -11.79102 -11.70566 -11.28614 -11.13178 -10.61897 -10.36254 -10.28177 -10.03533 -9.99875 -9.59794 -9.18314 -8.90115 -8.63118 -8.25279 -8.19398 -6.33237 -3.84817 1.66270 2.06876 2.15058 2.62130 2.82481 3.00409 3.04741 3.13134 3.70829 3.83869 3.94402 4.07488 4.10304 4.18061 4.32484 4.48220 4.48979 4.60841 4.75683 4.79272 4.82265 4.86708 4.93190 5.04903 5.07115 5.18185 5.20111 5.20924 5.30210 5.34020 5.35699 5.53723 5.63688 5.68351 5.73602 5.78069 5.88455 5.90585 6.04042 6.36009 6.77947 6.85185 6.98199 7.47332 7.55672 7.64558 7.70755 8.12011 8.57224 8.92540 9.39928 9.79759 10.79832 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.001687 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.848044 B =16596.562262 C =17127.339020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 H 0.110 0.890 4 C -0.151 4.151 5 C 0.518 3.482 6 O -0.531 6.531 7 N -0.611 5.611 8 C 0.073 3.927 9 C 0.116 3.884 10 C 0.047 3.953 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.450 3.550 14 O -0.564 6.564 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.270 1.270 24 N -0.454 5.454 25 C -0.054 4.054 26 C -0.032 4.032 27 N -0.496 5.496 28 C 0.180 3.820 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.274 0.726 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.917 -10.359 -26.198 31.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.128 0.872 4 C -0.192 4.192 5 C 0.305 3.695 6 O -0.408 6.408 7 N -0.345 5.345 8 C -0.070 4.070 9 C -0.007 4.007 10 C -0.084 4.084 11 N -0.300 5.300 12 C -0.083 4.083 13 C 0.235 3.765 14 O -0.446 6.446 15 N -0.229 5.229 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 N -0.137 5.137 25 C -0.187 4.187 26 C -0.180 4.180 27 N -0.214 5.214 28 C -0.102 4.102 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.173 0.827 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.190 0.810 47 H 0.186 0.814 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 15.235 -10.257 -25.638 31.537 hybrid contribution -1.617 -0.041 -0.521 1.699 sum 13.617 -10.298 -26.159 31.237 Atomic orbital electron populations 1.22305 0.92179 1.03126 1.04927 1.21171 0.96379 0.96899 0.81050 0.87210 1.22043 1.03901 1.00878 0.92347 1.20241 0.79370 0.85591 0.84286 1.90729 1.39583 1.24353 1.86151 1.47812 1.55287 1.25302 1.06059 1.21907 0.96004 0.85410 1.03654 1.21470 0.96581 0.96910 0.85736 1.22247 0.95873 0.98912 0.91375 1.59988 1.29013 1.10020 1.30950 1.21685 0.90031 1.00256 0.96293 1.19677 0.83144 0.87137 0.86528 1.90567 1.50572 1.35818 1.67659 1.42200 1.17833 1.35609 1.27293 1.19440 1.04656 1.17493 1.01883 0.86250 1.25038 0.97208 0.97796 0.96075 1.69620 1.24035 1.39898 1.18491 0.86668 0.81520 0.82223 0.78943 1.19587 1.20155 1.19561 1.45785 1.38000 1.11445 1.18499 1.22801 1.02298 1.01338 0.92297 1.22317 1.04708 0.89597 1.01395 1.70316 1.12349 1.28295 1.10451 1.24880 1.03899 0.85430 0.95978 0.88304 0.91672 0.92103 0.87872 0.87960 0.92080 0.90169 0.90995 0.89064 0.89494 0.95111 0.91094 0.82740 0.93714 0.89489 0.79694 0.91590 0.80968 0.81427 0.78309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 8.98 37.16 0.33 -0.76 16 2 C 0.15 0.88 2.70 -67.92 -0.18 0.70 16 3 H 0.11 0.71 7.89 -51.93 -0.41 0.30 16 4 C -0.15 -0.74 3.73 -27.88 -0.10 -0.84 16 5 C 0.52 4.14 7.39 -10.98 -0.08 4.06 16 6 O -0.53 -6.10 13.55 5.56 0.08 -6.03 16 7 N -0.61 -4.44 2.87 -181.57 -0.52 -4.96 16 8 C 0.07 0.29 10.24 59.84 0.61 0.91 16 9 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 10 C 0.05 0.52 6.01 -3.83 -0.02 0.49 16 11 N -0.67 -9.95 6.13 -115.06 -0.70 -10.65 16 12 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 13 C 0.45 10.13 7.82 -10.99 -0.09 10.05 16 14 O -0.56 -15.07 15.78 5.55 0.09 -14.98 16 15 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 16 C -0.31 -8.64 10.16 -14.93 -0.15 -8.80 16 17 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 20 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 24 N -0.45 -3.04 2.62 -111.45 -0.29 -3.33 16 25 C -0.05 -0.38 11.54 -16.56 -0.19 -0.57 16 26 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 27 N -0.50 -4.98 11.25 -14.66 -0.16 -5.15 16 28 C 0.18 1.36 11.65 -90.38 -1.05 0.30 16 29 H 0.10 0.84 5.95 -51.93 -0.31 0.53 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.33 7.95 -51.93 -0.41 -0.08 16 32 H 0.10 0.33 7.34 -51.93 -0.38 -0.05 16 33 H 0.10 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 36 H 0.07 0.16 6.44 -51.93 -0.33 -0.17 16 37 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.09 0.96 7.42 -51.93 -0.39 0.57 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 48 H 0.20 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -36.28 399.30 -8.21 -44.49 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.42 Total: 11.02 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.29 Total: 7.96 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.96 Total: -63.00 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.16 Total: -21.01 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.28 -8.21 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481285283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.392 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds