Wall clock time and date at job start Tue Mar 31 2020 19:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00193 * 359.97438 * 7 5 4 9 9 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 10 10 C 1.53000 * 109.47320 * 89.99267 * 9 7 5 11 11 N 1.46897 * 109.47134 * 180.02562 * 10 9 7 12 12 C 1.46895 * 111.00171 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47333 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00270 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00054 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00086 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99585 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99936 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99802 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47211 * 90.00280 * 20 18 16 22 22 H 1.48501 * 109.46847 * 209.99838 * 20 18 16 23 23 H 1.48496 * 109.47405 * 329.99960 * 20 18 16 24 24 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 25 25 C 1.36885 * 126.39286 * 120.00096 * 24 2 1 26 26 C 1.34665 * 106.81493 * 179.97438 * 25 24 2 27 27 N 1.34129 * 108.02445 * 0.02562 * 26 25 24 28 28 C 1.30498 * 109.25189 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 31 31 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 33 33 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 34 34 H 1.09003 * 109.46892 * 90.00805 * 8 7 5 35 35 H 1.08997 * 109.47554 * 210.00418 * 8 7 5 36 36 H 1.09003 * 109.47352 * 330.00559 * 8 7 5 37 37 H 1.08994 * 109.46819 * 209.99867 * 9 7 5 38 38 H 1.09001 * 109.46417 * 329.99372 * 9 7 5 39 39 H 1.08996 * 109.47149 * 300.00096 * 10 9 7 40 40 H 1.09004 * 109.46839 * 60.00028 * 10 9 7 41 41 H 1.00901 * 110.99765 * 56.04324 * 11 10 9 42 42 H 1.09005 * 109.47438 * 300.00286 * 12 11 10 43 43 H 1.09005 * 109.47135 * 60.00158 * 12 11 10 44 44 H 0.96996 * 120.00002 * 359.97438 * 15 13 12 45 45 H 0.97002 * 120.00387 * 180.02562 * 19 18 16 46 46 H 1.07999 * 126.59054 * 359.73997 * 25 24 2 47 47 H 1.08008 * 125.98738 * 179.97438 * 26 25 24 48 48 H 1.08006 * 125.64605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 2.7462 -1.6357 3.8371 9 6 1.5980 0.3655 4.8933 10 6 0.2306 -0.1166 5.3817 11 7 -0.1579 0.6428 6.5777 12 6 -1.4686 0.2055 7.0762 13 6 -1.8329 1.0055 8.3003 14 8 -1.0750 1.8560 8.7167 15 7 -3.0005 0.7752 8.9329 16 6 -3.3317 1.5027 10.0468 17 1 -2.6568 2.2599 10.4175 18 6 -4.5357 1.2656 10.6987 19 7 -4.8534 1.9632 11.7661 20 14 -5.7027 -0.0447 10.0578 21 1 -5.3853 -1.3463 10.6983 22 1 -7.1010 0.3376 10.3799 23 1 -5.5495 -0.1669 8.5858 24 7 2.0184 -0.6907 -1.1961 25 6 2.8085 -0.1554 -2.1774 26 6 3.0192 -1.1298 -3.0827 27 7 2.3748 -2.2299 -2.6660 28 6 1.7733 -1.9743 -1.5365 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 3.8131 -1.4129 3.8191 35 1 2.4912 -2.1155 4.7820 36 1 2.5007 -2.3044 3.0121 37 1 2.3391 0.2115 5.6775 38 1 1.5431 1.4263 4.6485 39 1 -0.5104 0.0375 4.5974 40 1 0.2855 -1.1774 5.6264 41 1 -0.1533 1.6348 6.3934 42 1 -2.2217 0.3610 6.3036 43 1 -1.4250 -0.8529 7.3332 44 1 -3.6065 0.0949 8.6001 45 1 -5.6937 1.7976 12.2214 46 1 3.1868 0.8553 -2.2195 47 1 3.6039 -1.0408 -3.9865 48 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481285283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:50 Heat of formation + Delta-G solvation = -21.098345 kcal Electronic energy + Delta-G solvation = -28186.049383 eV Core-core repulsion = 24083.662029 eV Total energy + Delta-G solvation = -4102.387354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02829 -41.15106 -40.31199 -37.76974 -36.57847 -36.24628 -35.75957 -33.76637 -32.22708 -31.14446 -30.12202 -29.09645 -28.12856 -27.06932 -25.49615 -24.31985 -23.14234 -22.26970 -21.40800 -21.24065 -20.36895 -19.94645 -18.72000 -17.90704 -17.50106 -17.33867 -17.13760 -16.68083 -16.66109 -16.10538 -15.80164 -15.63435 -15.30554 -15.03637 -14.90344 -14.72763 -14.59744 -14.44726 -14.22206 -14.02817 -13.97398 -13.81768 -13.80338 -13.45143 -13.19907 -13.00620 -12.85054 -12.67871 -12.53971 -12.42412 -12.23052 -12.06346 -11.98865 -11.52593 -10.97205 -10.88214 -10.59560 -10.49335 -10.26335 -9.74469 -9.43286 -9.42825 -8.42333 -6.03651 1.15505 1.29676 1.35105 1.44108 1.50408 1.61668 1.93138 2.07507 2.22316 2.25671 2.76601 3.13641 3.38625 3.40225 3.55834 3.70902 3.89011 3.98002 4.03525 4.08055 4.11987 4.16498 4.29091 4.40704 4.42545 4.48447 4.48797 4.55863 4.60497 4.70438 4.72267 4.77258 4.82983 4.87028 4.96381 4.98789 5.17484 5.38527 5.41522 5.51704 5.84301 5.86136 5.98689 6.26203 6.29035 6.32623 6.57943 6.86331 7.07580 7.17160 7.37747 7.94053 8.75243 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.001687 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.848044 B =16596.562262 C =17127.339020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.101 0.899 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.573 6.573 7 N -0.609 5.609 8 C 0.067 3.933 9 C 0.121 3.879 10 C 0.056 3.944 11 N -0.682 5.682 12 C 0.064 3.936 13 C 0.447 3.553 14 O -0.614 6.614 15 N -0.590 5.590 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.232 1.232 24 N -0.451 5.451 25 C -0.055 4.055 26 C -0.055 4.055 27 N -0.537 5.537 28 C 0.180 3.820 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.343 0.657 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.193 0.807 47 H 0.178 0.822 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.594 -13.878 -28.316 34.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.119 0.881 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.075 4.075 9 C -0.003 4.003 10 C -0.074 4.074 11 N -0.314 5.314 12 C -0.068 4.068 13 C 0.235 3.765 14 O -0.499 6.499 15 N -0.231 5.231 16 C -0.461 4.461 17 H 0.073 0.927 18 C -0.213 4.213 19 N -0.574 5.574 20 Si 0.786 3.214 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.155 1.155 24 N -0.134 5.134 25 C -0.188 4.188 26 C -0.202 4.202 27 N -0.256 5.256 28 C -0.103 4.103 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.210 0.790 47 H 0.196 0.804 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 14.950 -13.815 -27.783 34.442 hybrid contribution -1.395 1.155 0.168 1.819 sum 13.555 -12.660 -27.615 33.265 Atomic orbital electron populations 1.22220 0.92641 1.03614 1.03548 1.21095 0.95913 0.96668 0.81312 0.88064 1.21991 1.04827 1.01177 0.89910 1.20763 0.78591 0.85213 0.85170 1.90723 1.41542 1.26282 1.86757 1.47878 1.55113 1.26057 1.05088 1.22166 0.96156 0.84178 1.04984 1.21261 0.96132 0.96074 0.86825 1.22254 0.96268 0.99255 0.89587 1.60013 1.28369 1.09875 1.33170 1.21611 0.91400 1.00331 0.93460 1.20962 0.81772 0.86315 0.87425 1.90546 1.51945 1.38031 1.69342 1.42019 1.18878 1.35865 1.26372 1.19021 1.04738 1.17886 1.04416 0.92680 1.26126 0.98865 1.00566 0.95741 1.69804 1.25080 1.42225 1.20279 0.85355 0.77530 0.78128 0.80436 1.17947 1.20050 1.15549 1.45807 1.37751 1.11305 1.18517 1.23162 1.01796 1.02001 0.91856 1.22629 1.05380 0.89784 1.02374 1.70288 1.13811 1.29501 1.11951 1.25390 1.03393 0.85934 0.95540 0.90186 0.92470 0.90663 0.85318 0.86497 0.91097 0.89686 0.88616 0.88474 0.91784 0.95569 0.89158 0.83856 0.91078 0.86312 0.77438 0.91108 0.78953 0.80449 0.75700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.98 71.98 0.65 -1.24 16 2 C 0.15 1.52 2.70 45.00 0.12 1.64 16 3 H 0.10 1.21 7.89 -2.39 -0.02 1.19 16 4 C -0.14 -0.93 3.73 29.85 0.11 -0.82 16 5 C 0.51 7.22 7.39 87.66 0.65 7.86 16 6 O -0.57 -12.90 13.55 -3.02 -0.04 -12.94 16 7 N -0.61 -7.38 2.87 -846.76 -2.43 -9.81 16 8 C 0.07 0.29 10.24 127.77 1.31 1.60 16 9 C 0.12 2.11 5.67 86.38 0.49 2.60 16 10 C 0.06 1.11 6.01 86.30 0.52 1.63 16 11 N -0.68 -19.38 6.13 -517.94 -3.17 -22.55 16 12 C 0.06 1.92 6.17 85.56 0.53 2.45 16 13 C 0.45 20.09 7.82 87.66 0.69 20.78 16 14 O -0.61 -34.05 15.78 -3.07 -0.05 -34.10 16 15 N -0.59 -27.67 5.09 -306.98 -1.56 -29.23 16 16 C -0.33 -19.43 10.16 84.04 0.85 -18.58 16 17 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 18 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 19 N -0.93 -56.15 13.96 21.66 0.30 -55.85 16 20 Si 0.97 38.38 27.74 68.60 1.90 40.28 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 24 N -0.45 -5.09 2.62 -506.53 -1.33 -6.42 16 25 C -0.06 -0.68 11.54 83.08 0.96 0.28 16 26 C -0.05 -0.86 11.87 83.52 0.99 0.13 16 27 N -0.54 -10.11 11.25 -200.31 -2.25 -12.36 16 28 C 0.18 2.29 11.65 180.26 2.10 4.39 16 29 H 0.08 1.30 5.95 -2.39 -0.01 1.29 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.63 7.95 -2.39 -0.02 0.61 16 32 H 0.13 0.24 7.34 -2.39 -0.02 0.22 16 33 H 0.12 0.52 8.11 -2.39 -0.02 0.50 16 34 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.08 0.33 8.07 -2.39 -0.02 0.31 16 36 H 0.10 -0.02 6.44 -2.39 -0.02 -0.03 16 37 H 0.10 1.57 8.07 -2.39 -0.02 1.56 16 38 H 0.06 1.43 7.42 -2.39 -0.02 1.41 16 39 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.34 10.90 8.43 -89.69 -0.76 10.14 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 44 H 0.39 15.03 5.76 -92.71 -0.53 14.49 16 45 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.23 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -85.81 399.30 1.43 -84.38 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.37 Total: 36.17 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 10.43 Total: 22.42 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -10.45 Total: -136.22 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.09 Total: -47.03 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -85.81 1.43 -84.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481285283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds