Wall clock time and date at job start Tue Mar 31 2020 20:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.35847 * 126.13884 * 269.97549 * 3 2 1 5 5 N 1.30180 * 109.00357 * 179.78046 * 4 3 2 6 6 C 1.35757 * 108.86577 * 0.39150 * 5 4 3 7 7 C 1.47324 * 126.23566 * 179.88251 * 6 5 4 8 8 O 1.21625 * 119.99776 * 179.68651 * 7 6 5 9 9 N 1.34779 * 119.99929 * 359.68139 * 7 6 5 10 10 C 1.46497 * 119.99900 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46695 * 55.00137 * 11 10 9 13 13 C 1.52997 * 109.47018 * 295.00697 * 11 10 9 14 14 C 1.52993 * 109.47169 * 175.00074 * 11 10 9 15 15 N 1.46905 * 109.47039 * 185.00340 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47103 * 120.00017 * 24 22 20 27 27 H 1.48494 * 109.47266 * 240.00436 * 24 22 20 28 28 C 1.35380 * 126.13227 * 90.00525 * 3 2 1 29 29 H 1.09001 * 109.46653 * 299.99586 * 1 2 3 30 30 H 1.08995 * 109.47566 * 59.99136 * 1 2 3 31 31 H 1.08998 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46988 * 240.01116 * 2 1 3 33 33 H 1.08993 * 109.47559 * 120.00318 * 2 1 3 34 34 H 1.08000 * 125.49911 * 0.02992 * 4 3 2 35 35 H 0.97000 * 119.99425 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47036 * 60.00440 * 10 9 7 37 37 H 1.08994 * 109.47323 * 300.00632 * 10 9 7 38 38 H 1.08998 * 109.46936 * 299.99328 * 13 11 10 39 39 H 1.08996 * 109.47633 * 59.99846 * 13 11 10 40 40 H 1.09008 * 109.46827 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47393 * 65.00621 * 14 11 10 42 42 H 1.08998 * 109.47408 * 305.00267 * 14 11 10 43 43 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 44 44 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 45 45 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 46 46 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 47 47 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56360 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1364 -1.0971 5 7 2.6958 3.3109 -0.7135 6 6 2.7142 3.3479 0.6434 7 6 3.1184 4.4928 1.4779 8 8 3.0857 4.4030 2.6904 9 7 3.5244 5.6395 0.8978 10 6 3.9268 6.7778 1.7276 11 6 4.3405 7.9440 0.8278 12 1 3.5298 8.1750 0.1368 13 6 5.5913 7.5581 0.0357 14 6 4.6412 9.1716 1.6899 15 7 4.9218 10.3229 0.8217 16 6 5.2162 11.5225 1.6168 17 6 5.4977 12.6802 0.6940 18 8 5.4574 12.5214 -0.5078 19 7 5.7951 13.8917 1.2041 20 6 6.0516 14.9447 0.3646 21 1 6.0158 14.8034 -0.7055 22 6 6.3578 16.1939 0.8905 23 7 6.4018 16.3658 2.1926 24 14 6.7080 17.6286 -0.2533 25 1 6.5957 17.1764 -1.6633 26 1 5.7254 18.7133 -0.0021 27 1 8.0809 18.1368 -0.0040 28 6 2.2845 2.1338 1.0934 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.1724 1.8157 -2.1221 35 1 3.5501 5.7111 -0.0692 36 1 4.7684 6.4888 2.3572 37 1 3.0904 7.0825 2.3566 38 1 6.4020 7.3271 0.7267 39 1 5.3771 6.6836 -0.5785 40 1 5.8863 8.3892 -0.6050 41 1 5.5088 8.9706 2.3184 42 1 3.7797 9.3931 2.3199 43 1 4.1577 10.4898 0.1842 44 1 4.3589 11.7604 2.2465 45 1 6.0879 11.3374 2.2444 46 1 5.8276 14.0186 2.1652 47 1 6.6159 17.2377 2.5597 48 1 2.1779 1.8308 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482160746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:38 Heat of formation + Delta-G solvation = -22.731903 kcal Electronic energy + Delta-G solvation = -27351.233575 eV Core-core repulsion = 23248.775384 eV Total energy + Delta-G solvation = -4102.458191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61639 -39.53519 -38.30419 -37.06923 -35.57200 -34.76709 -33.80310 -32.23079 -31.15313 -30.88586 -30.07532 -27.33651 -26.81664 -25.04032 -24.39658 -23.48738 -22.56484 -21.37025 -20.64514 -20.12403 -19.14495 -18.27944 -17.81493 -16.61422 -16.38531 -16.05601 -15.79027 -15.69605 -15.21241 -15.13628 -14.63837 -14.46332 -14.40020 -14.26734 -14.17820 -13.85494 -13.55963 -13.37464 -13.25026 -13.01713 -12.81695 -12.48262 -12.29782 -12.11789 -11.84220 -11.61506 -11.47572 -11.09328 -10.95850 -10.91992 -10.77023 -10.69078 -10.31355 -10.26563 -10.20864 -10.17595 -9.48108 -9.24076 -8.93861 -8.40585 -7.98704 -7.91133 -6.38032 -3.78657 1.23969 2.04173 2.10753 3.11292 3.19269 3.29575 3.35316 3.37078 3.91159 3.95818 4.03186 4.15223 4.19372 4.26058 4.38455 4.46255 4.72664 4.83211 4.85901 4.90683 4.92713 5.05148 5.11521 5.24058 5.30654 5.32079 5.46186 5.57648 5.59124 5.69521 5.78970 5.84353 5.96318 6.01066 6.04545 6.05547 6.22187 6.32458 6.37616 6.51765 6.54421 7.25002 7.27908 7.55155 7.59075 7.72909 8.10786 8.12886 8.65608 9.21988 9.58881 10.10429 10.79885 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039357 B = 0.001373 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.266931 B =20381.857276 C =20771.896747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.186 3.814 5 N -0.463 5.463 6 C -0.063 4.063 7 C 0.602 3.398 8 O -0.549 6.549 9 N -0.712 5.712 10 C 0.125 3.875 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.140 4.140 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.034 3.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.349 0.651 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 -34.713 -1.507 36.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.097 4.097 5 N -0.182 5.182 6 C -0.192 4.192 7 C 0.388 3.612 8 O -0.427 6.427 9 N -0.363 5.363 10 C 0.001 3.999 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.198 4.198 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.105 4.105 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.227 0.773 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.168 0.832 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.108 -34.298 -1.949 35.809 hybrid contribution -0.928 0.402 0.496 1.127 sum -11.036 -33.895 -1.453 35.676 Atomic orbital electron populations 1.22187 0.93656 1.03545 1.03585 1.21984 0.95967 0.79222 1.05222 1.45563 1.48348 1.13228 1.06836 1.25186 1.03505 0.87382 0.93667 1.70622 1.17910 1.19281 1.10341 1.20583 1.12458 0.95587 0.90564 1.16887 0.76637 0.81354 0.86309 1.90799 1.55427 1.83010 1.13446 1.45782 1.66518 1.12766 1.11195 1.21416 1.00205 0.85046 0.93272 1.21334 0.99468 0.93605 0.97458 0.90478 1.21756 0.96392 1.01457 1.00158 1.21896 0.99862 0.90182 0.94438 1.60033 1.47727 1.03225 1.18838 1.21665 1.00864 0.90308 0.95352 1.19831 0.84433 0.83889 0.89139 1.90520 1.57102 1.83737 1.15353 1.41871 1.61080 1.07652 1.09557 1.19759 1.43806 0.87201 0.92025 0.87879 1.25257 0.97485 0.98929 0.96302 1.69625 1.49252 1.24859 1.10641 0.85805 0.77852 0.80493 0.80227 1.19216 1.20815 1.20765 1.22595 1.02750 0.91862 0.93284 0.91601 0.91547 0.90203 0.88308 0.88606 0.77261 0.75455 0.91137 0.91423 0.92873 0.93487 0.90478 0.90738 0.95286 0.83227 0.93903 0.89589 0.77463 0.91965 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.24 37.16 0.38 0.15 16 2 C 0.10 0.14 6.84 -4.04 -0.03 0.11 16 3 N -0.46 -2.44 2.73 -118.36 -0.32 -2.76 16 4 C 0.19 1.19 12.55 -89.90 -1.13 0.06 16 5 N -0.46 -4.61 11.01 -11.03 -0.12 -4.73 16 6 C -0.06 -0.68 6.98 -83.09 -0.58 -1.26 16 7 C 0.60 7.65 7.81 -12.56 -0.10 7.55 16 8 O -0.55 -8.40 16.88 5.26 0.09 -8.31 16 9 N -0.71 -7.98 5.28 -61.42 -0.32 -8.30 16 10 C 0.12 1.37 5.06 -4.04 -0.02 1.35 16 11 C -0.10 -1.10 2.57 -90.62 -0.23 -1.33 16 12 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 13 C -0.14 -1.62 8.95 37.16 0.33 -1.29 16 14 C 0.07 0.83 5.07 -3.82 -0.02 0.81 16 15 N -0.67 -10.79 5.58 -115.06 -0.64 -11.43 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 17 C 0.44 10.60 7.82 -10.99 -0.09 10.51 16 18 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 19 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.03 0.27 11.26 -16.64 -0.19 0.09 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 34 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.41 4.26 7.37 -40.82 -0.30 3.96 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.49 7.18 -51.93 -0.37 0.12 16 40 H 0.08 1.05 7.75 -51.92 -0.40 0.65 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -35.90 409.02 -8.95 -44.85 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.58 Total: 13.40 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.94 Total: 9.54 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -0.74 Total: -65.99 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.18 Total: -24.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.90 -8.95 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.114 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds