Wall clock time and date at job start Tue Mar 31 2020 20:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.35847 * 126.13884 * 269.97549 * 3 2 1 5 5 N 1.30180 * 109.00357 * 179.78046 * 4 3 2 6 6 C 1.35757 * 108.86577 * 0.39150 * 5 4 3 7 7 C 1.47324 * 126.23566 * 179.88251 * 6 5 4 8 8 O 1.21625 * 119.99776 * 179.68651 * 7 6 5 9 9 N 1.34779 * 119.99929 * 359.68139 * 7 6 5 10 10 C 1.46497 * 119.99900 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46695 * 55.00137 * 11 10 9 13 13 C 1.52997 * 109.47018 * 295.00697 * 11 10 9 14 14 C 1.52993 * 109.47169 * 175.00074 * 11 10 9 15 15 N 1.46905 * 109.47039 * 185.00340 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47103 * 120.00017 * 24 22 20 27 27 H 1.48494 * 109.47266 * 240.00436 * 24 22 20 28 28 C 1.35380 * 126.13227 * 90.00525 * 3 2 1 29 29 H 1.09001 * 109.46653 * 299.99586 * 1 2 3 30 30 H 1.08995 * 109.47566 * 59.99136 * 1 2 3 31 31 H 1.08998 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46988 * 240.01116 * 2 1 3 33 33 H 1.08993 * 109.47559 * 120.00318 * 2 1 3 34 34 H 1.08000 * 125.49911 * 0.02992 * 4 3 2 35 35 H 0.97000 * 119.99425 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47036 * 60.00440 * 10 9 7 37 37 H 1.08994 * 109.47323 * 300.00632 * 10 9 7 38 38 H 1.08998 * 109.46936 * 299.99328 * 13 11 10 39 39 H 1.08996 * 109.47633 * 59.99846 * 13 11 10 40 40 H 1.09008 * 109.46827 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47393 * 65.00621 * 14 11 10 42 42 H 1.08998 * 109.47408 * 305.00267 * 14 11 10 43 43 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 44 44 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 45 45 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 46 46 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 47 47 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56360 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1364 -1.0971 5 7 2.6958 3.3109 -0.7135 6 6 2.7142 3.3479 0.6434 7 6 3.1184 4.4928 1.4779 8 8 3.0857 4.4030 2.6904 9 7 3.5244 5.6395 0.8978 10 6 3.9268 6.7778 1.7276 11 6 4.3405 7.9440 0.8278 12 1 3.5298 8.1750 0.1368 13 6 5.5913 7.5581 0.0357 14 6 4.6412 9.1716 1.6899 15 7 4.9218 10.3229 0.8217 16 6 5.2162 11.5225 1.6168 17 6 5.4977 12.6802 0.6940 18 8 5.4574 12.5214 -0.5078 19 7 5.7951 13.8917 1.2041 20 6 6.0516 14.9447 0.3646 21 1 6.0158 14.8034 -0.7055 22 6 6.3578 16.1939 0.8905 23 7 6.4018 16.3658 2.1926 24 14 6.7080 17.6286 -0.2533 25 1 6.5957 17.1764 -1.6633 26 1 5.7254 18.7133 -0.0021 27 1 8.0809 18.1368 -0.0040 28 6 2.2845 2.1338 1.0934 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.1724 1.8157 -2.1221 35 1 3.5501 5.7111 -0.0692 36 1 4.7684 6.4888 2.3572 37 1 3.0904 7.0825 2.3566 38 1 6.4020 7.3271 0.7267 39 1 5.3771 6.6836 -0.5785 40 1 5.8863 8.3892 -0.6050 41 1 5.5088 8.9706 2.3184 42 1 3.7797 9.3931 2.3199 43 1 4.1577 10.4898 0.1842 44 1 4.3589 11.7604 2.2465 45 1 6.0879 11.3374 2.2444 46 1 5.8276 14.0186 2.1652 47 1 6.6159 17.2377 2.5597 48 1 2.1779 1.8308 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482160746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:37 Heat of formation + Delta-G solvation = -49.061109 kcal Electronic energy + Delta-G solvation = -27352.375295 eV Core-core repulsion = 23248.775384 eV Total energy + Delta-G solvation = -4103.599911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.15194 -40.48323 -40.12341 -38.22723 -36.17248 -35.93625 -35.59995 -33.42293 -33.11510 -31.27259 -30.67867 -28.81504 -27.71975 -26.60222 -25.10692 -24.38843 -23.49618 -21.83118 -21.62486 -21.14948 -20.77312 -19.88182 -18.85501 -17.81360 -17.24758 -17.08406 -16.94220 -16.65154 -16.49791 -16.13568 -15.96746 -15.51449 -15.34790 -15.19724 -15.05900 -14.93113 -14.63256 -14.47255 -14.34782 -13.92155 -13.60341 -13.47342 -13.37805 -13.14460 -13.00011 -12.96999 -12.83376 -12.39624 -12.21499 -12.10942 -12.00935 -11.96002 -11.71896 -11.50212 -11.38803 -11.07184 -10.75943 -10.32969 -10.14365 -10.00271 -9.59375 -9.27826 -8.45827 -5.94524 0.56642 1.37409 1.42516 1.44783 1.56934 1.70422 2.06611 2.26089 2.32580 2.53815 2.97275 3.21679 3.43881 3.54402 3.77517 3.87450 3.90334 3.97666 4.07079 4.10819 4.19937 4.34635 4.42439 4.44441 4.49652 4.51592 4.59881 4.64378 4.70385 4.78002 4.83862 4.85000 4.98026 5.09494 5.12889 5.23814 5.27762 5.42148 5.43803 5.45605 5.52367 5.90262 6.11388 6.12314 6.42574 6.49276 6.61332 6.86780 7.13764 7.22986 7.57577 8.12870 8.71894 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039357 B = 0.001373 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.266931 B =20381.857276 C =20771.896747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.195 3.805 5 N -0.498 5.498 6 C -0.101 4.101 7 C 0.597 3.403 8 O -0.585 6.585 9 N -0.707 5.707 10 C 0.131 3.869 11 C -0.087 4.087 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.069 3.931 15 N -0.678 5.678 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.040 3.960 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.248 0.752 35 H 0.413 0.587 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.344 0.656 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 -36.419 -1.746 38.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.089 4.089 5 N -0.217 5.217 6 C -0.229 4.229 7 C 0.385 3.615 8 O -0.466 6.466 9 N -0.357 5.357 10 C 0.007 3.993 11 C -0.106 4.106 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.061 4.061 15 N -0.310 5.310 16 C -0.067 4.067 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.264 0.736 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.635 -36.030 -2.177 37.630 hybrid contribution -0.812 0.794 0.532 1.254 sum -11.447 -35.236 -1.645 37.085 Atomic orbital electron populations 1.22167 0.93555 1.04421 1.02494 1.22341 0.95934 0.77168 1.07250 1.45813 1.47129 1.14317 1.05718 1.25924 1.01348 0.86450 0.95208 1.70549 1.19735 1.21459 1.09970 1.20477 1.15183 0.96022 0.91185 1.17249 0.76071 0.82041 0.86171 1.90759 1.57217 1.83737 1.14859 1.45755 1.66043 1.12560 1.11356 1.21312 0.99975 0.84897 0.93085 1.21193 0.99247 0.93023 0.97154 0.90244 1.21683 0.96603 1.00962 0.99957 1.21949 1.00734 0.89115 0.94270 1.60027 1.48065 1.03396 1.19493 1.21528 1.02517 0.88515 0.94189 1.20892 0.82401 0.84656 0.89505 1.90488 1.58332 1.84508 1.17555 1.41937 1.61704 1.07985 1.09477 1.19718 1.46233 0.88927 0.91472 0.90325 1.26037 0.96528 1.00782 0.97881 1.69683 1.48967 1.25825 1.11727 0.84869 0.78258 0.77306 0.77892 1.19769 1.19581 1.19618 1.22781 1.01477 0.91390 0.94451 0.93229 0.92071 0.88345 0.85617 0.87340 0.73612 0.74999 0.91463 0.91586 0.92836 0.92497 0.92614 0.90091 0.93902 0.83742 0.91598 0.87840 0.76983 0.91322 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.10 10.24 71.98 0.74 0.64 16 2 C 0.09 0.00 6.84 86.38 0.59 0.59 16 3 N -0.45 -3.92 2.73 -528.37 -1.44 -5.36 16 4 C 0.20 2.11 12.55 180.10 2.26 4.37 16 5 N -0.50 -9.59 11.01 -188.81 -2.08 -11.66 16 6 C -0.10 -2.17 6.98 40.51 0.28 -1.89 16 7 C 0.60 15.50 7.81 86.63 0.68 16.18 16 8 O -0.58 -18.37 16.88 -4.11 -0.07 -18.44 16 9 N -0.71 -15.94 5.28 -466.47 -2.46 -18.40 16 10 C 0.13 2.84 5.06 86.38 0.44 3.27 16 11 C -0.09 -1.86 2.57 -10.80 -0.03 -1.88 16 12 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 13 C -0.13 -3.06 8.95 71.98 0.64 -2.42 16 14 C 0.07 1.62 5.07 86.30 0.44 2.06 16 15 N -0.68 -21.46 5.58 -517.93 -2.89 -24.35 16 16 C 0.06 2.26 6.17 85.56 0.53 2.79 16 17 C 0.44 21.22 7.82 87.66 0.69 21.91 16 18 O -0.62 -35.04 15.78 -3.07 -0.05 -35.09 16 19 N -0.57 -29.97 5.29 -306.99 -1.62 -31.60 16 20 C -0.33 -19.29 9.68 84.04 0.81 -18.47 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.04 0.62 11.26 83.72 0.94 1.56 16 29 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.25 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.41 8.61 7.37 -92.71 -0.68 7.93 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.16 7.18 -2.39 -0.02 1.14 16 40 H 0.05 1.52 7.75 -2.38 -0.02 1.50 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.34 11.43 8.43 -89.69 -0.76 10.68 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 3.28 8.14 -2.39 -0.02 3.27 16 46 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 47 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.48 409.02 0.00 -79.48 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -1.18 Total: 41.45 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 9.48 Total: 28.50 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -10.21 Total: -141.44 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.12 Total: -53.53 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.48 0.00 -79.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.416 kcal (2) G-P(sol) polarization free energy of solvation -79.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds