Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46512 * 109.46873 * 2 1 4 4 C 1.35847 * 126.13527 * 269.97427 * 3 2 1 5 5 N 1.30168 * 108.99991 * 179.78172 * 4 3 2 6 6 C 1.35751 * 108.86826 * 0.38863 * 5 4 3 7 7 C 1.47331 * 126.23868 * 179.88010 * 6 5 4 8 8 O 1.21617 * 120.00340 * 179.68498 * 7 6 5 9 9 N 1.34781 * 119.99620 * 359.68883 * 7 6 5 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47162 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47076 * 304.99867 * 11 10 9 13 13 C 1.53004 * 109.47412 * 64.99947 * 11 10 9 14 14 C 1.53006 * 109.47268 * 185.00067 * 11 10 9 15 15 N 1.46898 * 109.47138 * 174.99901 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46809 * 120.00147 * 24 22 20 27 27 H 1.48497 * 109.47378 * 239.99941 * 24 22 20 28 28 C 1.35379 * 126.13125 * 90.00660 * 3 2 1 29 29 H 1.09004 * 109.47184 * 299.99646 * 1 2 3 30 30 H 1.08997 * 109.47629 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47508 * 240.00578 * 2 1 3 33 33 H 1.08997 * 109.47629 * 120.00024 * 2 1 3 34 34 H 1.07999 * 125.50009 * 0.02582 * 4 3 2 35 35 H 0.96998 * 120.00074 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.46785 * 59.99797 * 10 9 7 37 37 H 1.09001 * 109.46833 * 299.99849 * 10 9 7 38 38 H 1.09001 * 109.47106 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46646 * 300.00184 * 13 11 10 40 40 H 1.08997 * 109.46495 * 60.00353 * 13 11 10 41 41 H 1.08997 * 109.46770 * 54.99847 * 14 11 10 42 42 H 1.08995 * 109.47019 * 295.00060 * 14 11 10 43 43 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 48 48 H 1.07994 * 126.56783 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2857 2.1365 -1.0971 5 7 2.6957 3.3109 -0.7136 6 6 2.7140 3.3479 0.6432 7 6 3.1182 4.4928 1.4778 8 8 3.0855 4.4032 2.6903 9 7 3.5242 5.6396 0.8976 10 6 3.9256 6.7782 1.7274 11 6 4.3382 7.9447 0.8275 12 1 5.1149 7.6144 0.1378 13 6 3.1240 8.4307 0.0334 14 6 4.8749 9.0891 1.6898 15 7 5.3816 10.1603 0.8217 16 6 5.9067 11.2783 1.6169 17 6 6.4169 12.3550 0.6943 18 8 6.3492 12.2060 -0.5075 19 7 6.9483 13.4836 1.2046 20 6 7.4119 14.4634 0.3652 21 1 7.3517 14.3308 -0.7049 22 6 7.9593 15.6272 0.8912 23 7 8.0322 15.7888 2.1933 24 14 8.5917 16.9619 -0.2525 25 1 8.3954 16.5394 -1.6626 26 1 7.8442 18.2209 -0.0048 27 1 10.0375 17.1867 0.0007 28 6 2.2844 2.1339 1.0934 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1724 1.8156 -2.1221 35 1 3.5499 5.7113 -0.0694 36 1 4.7668 6.4898 2.3577 37 1 3.0885 7.0829 2.3556 38 1 3.4179 9.2620 -0.6073 39 1 2.7417 7.6154 -0.5808 40 1 2.3474 8.7610 0.7232 41 1 5.6832 8.7200 2.3210 42 1 4.0730 9.4784 2.3169 43 1 4.6678 10.4752 0.1817 44 1 5.1122 11.6829 2.2439 45 1 6.7223 10.9241 2.2474 46 1 7.0021 13.6029 2.1657 47 1 8.4147 16.6011 2.5606 48 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482160747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = -22.373903 kcal Electronic energy + Delta-G solvation = -27356.928252 eV Core-core repulsion = 23254.485586 eV Total energy + Delta-G solvation = -4102.442667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61690 -39.54343 -38.32197 -37.12368 -35.57179 -34.76702 -33.80673 -32.21124 -31.15097 -30.88641 -30.07771 -27.33201 -26.95720 -25.08777 -24.39633 -23.52127 -22.56685 -21.36699 -20.57929 -20.03969 -19.17816 -18.27577 -17.82934 -16.59880 -16.52887 -16.13426 -15.82183 -15.60711 -15.28002 -15.12865 -14.61119 -14.50676 -14.37143 -14.27187 -14.11652 -13.85705 -13.64711 -13.38560 -13.17669 -12.90516 -12.84163 -12.64874 -12.50204 -12.11850 -11.97765 -11.52567 -11.49874 -11.09227 -11.04543 -10.86369 -10.79903 -10.69235 -10.31270 -10.26505 -10.21098 -10.17769 -9.48113 -9.24163 -8.93896 -8.40643 -7.99556 -7.91282 -6.37948 -3.78586 1.24093 2.04319 2.10803 3.11273 3.19334 3.29641 3.35413 3.37175 3.91227 3.95787 4.03257 4.15497 4.19362 4.26087 4.39198 4.46367 4.72003 4.83485 4.85691 4.88899 4.90988 4.99540 5.10880 5.19708 5.29933 5.31788 5.48552 5.54062 5.59194 5.65311 5.69731 5.85958 5.86645 5.95984 6.01601 6.04908 6.18787 6.25900 6.32875 6.38049 6.54444 7.25130 7.28451 7.55181 7.59167 7.73848 8.10847 8.12895 8.65688 9.22023 9.58879 10.10454 10.79956 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.001371 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.556790 B =20417.259718 C =20847.888674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.186 3.814 5 N -0.463 5.463 6 C -0.063 4.063 7 C 0.602 3.398 8 O -0.549 6.549 9 N -0.712 5.712 10 C 0.125 3.875 11 C -0.101 4.101 12 H 0.089 0.911 13 C -0.152 4.152 14 C 0.067 3.933 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.034 3.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.349 0.651 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.678 -32.959 -1.486 36.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.097 4.097 5 N -0.182 5.182 6 C -0.192 4.192 7 C 0.388 3.612 8 O -0.427 6.427 9 N -0.363 5.363 10 C 0.001 3.999 11 C -0.121 4.121 12 H 0.108 0.892 13 C -0.210 4.210 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.105 4.105 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.227 0.773 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.861 -32.674 -1.927 35.946 hybrid contribution -0.665 0.506 0.474 0.961 sum -15.526 -32.168 -1.454 35.748 Atomic orbital electron populations 1.22185 0.93663 1.03543 1.03571 1.21985 0.95957 0.79225 1.05233 1.45566 1.48351 1.13227 1.06836 1.25182 1.03504 0.87383 0.93666 1.70613 1.17892 1.19306 1.10343 1.20582 1.12458 0.95593 0.90562 1.16884 0.76645 0.81335 0.86307 1.90797 1.55415 1.83001 1.13446 1.45784 1.66629 1.12684 1.11190 1.21399 1.00320 0.84892 0.93240 1.21359 0.98707 0.94232 0.97759 0.89225 1.21900 0.97150 1.01695 1.00245 1.21880 0.98189 0.91864 0.94420 1.60083 1.41134 1.10224 1.18750 1.21673 0.99643 0.91554 0.95384 1.19832 0.84498 0.83846 0.89138 1.90518 1.60979 1.79874 1.15362 1.41869 1.53535 1.15171 1.09560 1.19760 1.35830 0.95179 0.92030 0.87874 1.25257 0.97683 0.98722 0.96303 1.69625 1.45828 1.28278 1.10638 0.85806 0.78248 0.80095 0.80228 1.19212 1.20811 1.20763 1.22593 1.02750 0.91858 0.93284 0.91611 0.91548 0.90205 0.88304 0.88603 0.77263 0.75464 0.91136 0.91341 0.91476 0.92533 0.92743 0.90770 0.95194 0.83047 0.93873 0.89560 0.77453 0.91964 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.24 37.15 0.38 0.15 16 2 C 0.10 0.14 6.84 -4.04 -0.03 0.11 16 3 N -0.46 -2.44 2.73 -118.36 -0.32 -2.76 16 4 C 0.19 1.19 12.55 -89.91 -1.13 0.06 16 5 N -0.46 -4.59 11.01 -11.03 -0.12 -4.72 16 6 C -0.06 -0.68 6.98 -83.09 -0.58 -1.26 16 7 C 0.60 7.63 7.81 -12.56 -0.10 7.53 16 8 O -0.55 -8.37 16.88 5.26 0.09 -8.29 16 9 N -0.71 -7.94 5.28 -61.42 -0.32 -8.27 16 10 C 0.13 1.37 5.06 -4.05 -0.02 1.35 16 11 C -0.10 -1.12 2.63 -90.62 -0.24 -1.36 16 12 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.15 -1.62 8.84 37.16 0.33 -1.29 16 14 C 0.07 0.84 5.14 -3.82 -0.02 0.82 16 15 N -0.67 -11.05 6.12 -115.05 -0.70 -11.76 16 16 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 17 C 0.44 10.66 7.82 -10.99 -0.09 10.58 16 18 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 19 N -0.56 -14.59 5.29 -10.97 -0.06 -14.65 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.03 0.27 11.26 -16.64 -0.19 0.09 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 34 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.41 4.23 7.37 -40.82 -0.30 3.93 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.78 6.68 -51.93 -0.35 0.44 16 39 H 0.06 0.55 7.18 -51.93 -0.37 0.17 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.35 5.92 6.68 -39.29 -0.26 5.66 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -36.14 406.76 -8.93 -45.07 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.46 Total: 13.59 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.95 Total: 9.56 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.81 Total: -66.31 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.18 Total: -24.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.14 -8.93 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.694 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds