Wall clock time and date at job start Tue Mar 31 2020 20:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46512 * 109.46873 * 2 1 4 4 C 1.35847 * 126.13527 * 269.97427 * 3 2 1 5 5 N 1.30168 * 108.99991 * 179.78172 * 4 3 2 6 6 C 1.35751 * 108.86826 * 0.38863 * 5 4 3 7 7 C 1.47331 * 126.23868 * 179.88010 * 6 5 4 8 8 O 1.21617 * 120.00340 * 179.68498 * 7 6 5 9 9 N 1.34781 * 119.99620 * 359.68883 * 7 6 5 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47162 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47076 * 304.99867 * 11 10 9 13 13 C 1.53004 * 109.47412 * 64.99947 * 11 10 9 14 14 C 1.53006 * 109.47268 * 185.00067 * 11 10 9 15 15 N 1.46898 * 109.47138 * 174.99901 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46809 * 120.00147 * 24 22 20 27 27 H 1.48497 * 109.47378 * 239.99941 * 24 22 20 28 28 C 1.35379 * 126.13125 * 90.00660 * 3 2 1 29 29 H 1.09004 * 109.47184 * 299.99646 * 1 2 3 30 30 H 1.08997 * 109.47629 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47508 * 240.00578 * 2 1 3 33 33 H 1.08997 * 109.47629 * 120.00024 * 2 1 3 34 34 H 1.07999 * 125.50009 * 0.02582 * 4 3 2 35 35 H 0.96998 * 120.00074 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.46785 * 59.99797 * 10 9 7 37 37 H 1.09001 * 109.46833 * 299.99849 * 10 9 7 38 38 H 1.09001 * 109.47106 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46646 * 300.00184 * 13 11 10 40 40 H 1.08997 * 109.46495 * 60.00353 * 13 11 10 41 41 H 1.08997 * 109.46770 * 54.99847 * 14 11 10 42 42 H 1.08995 * 109.47019 * 295.00060 * 14 11 10 43 43 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 48 48 H 1.07994 * 126.56783 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2857 2.1365 -1.0971 5 7 2.6957 3.3109 -0.7136 6 6 2.7140 3.3479 0.6432 7 6 3.1182 4.4928 1.4778 8 8 3.0855 4.4032 2.6903 9 7 3.5242 5.6396 0.8976 10 6 3.9256 6.7782 1.7274 11 6 4.3382 7.9447 0.8275 12 1 5.1149 7.6144 0.1378 13 6 3.1240 8.4307 0.0334 14 6 4.8749 9.0891 1.6898 15 7 5.3816 10.1603 0.8217 16 6 5.9067 11.2783 1.6169 17 6 6.4169 12.3550 0.6943 18 8 6.3492 12.2060 -0.5075 19 7 6.9483 13.4836 1.2046 20 6 7.4119 14.4634 0.3652 21 1 7.3517 14.3308 -0.7049 22 6 7.9593 15.6272 0.8912 23 7 8.0322 15.7888 2.1933 24 14 8.5917 16.9619 -0.2525 25 1 8.3954 16.5394 -1.6626 26 1 7.8442 18.2209 -0.0048 27 1 10.0375 17.1867 0.0007 28 6 2.2844 2.1339 1.0934 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1724 1.8156 -2.1221 35 1 3.5499 5.7113 -0.0694 36 1 4.7668 6.4898 2.3577 37 1 3.0885 7.0829 2.3556 38 1 3.4179 9.2620 -0.6073 39 1 2.7417 7.6154 -0.5808 40 1 2.3474 8.7610 0.7232 41 1 5.6832 8.7200 2.3210 42 1 4.0730 9.4784 2.3169 43 1 4.6678 10.4752 0.1817 44 1 5.1122 11.6829 2.2439 45 1 6.7223 10.9241 2.2474 46 1 7.0021 13.6029 2.1657 47 1 8.4147 16.6011 2.5606 48 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482160747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:39 Heat of formation + Delta-G solvation = -49.043404 kcal Electronic energy + Delta-G solvation = -27358.084729 eV Core-core repulsion = 23254.485586 eV Total energy + Delta-G solvation = -4103.599143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.15259 -40.49307 -40.13390 -38.29107 -36.17027 -35.93603 -35.60661 -33.41993 -33.10065 -31.27277 -30.68135 -28.79021 -27.84703 -26.61562 -25.15976 -24.40421 -23.48815 -21.82087 -21.50925 -21.16304 -20.75155 -19.89844 -18.85245 -17.92822 -17.25260 -17.15929 -16.92047 -16.75819 -16.45012 -16.08314 -15.96016 -15.55865 -15.42530 -15.20843 -14.93917 -14.90756 -14.63113 -14.49106 -14.31118 -13.94604 -13.62430 -13.48369 -13.45247 -13.28994 -13.07226 -12.96886 -12.78943 -12.39973 -12.21382 -12.11712 -12.07094 -11.84738 -11.75947 -11.50606 -11.39007 -11.07423 -10.75896 -10.33764 -10.14285 -10.00713 -9.59333 -9.30741 -8.46042 -5.94827 0.56785 1.37336 1.42502 1.44928 1.56971 1.70466 2.05827 2.26075 2.32546 2.53956 2.97111 3.21351 3.43919 3.54648 3.77419 3.89874 3.91027 3.93262 4.00081 4.10933 4.19043 4.34450 4.42512 4.44351 4.48518 4.53295 4.58953 4.59801 4.69920 4.76836 4.79358 4.85103 4.95445 5.01436 5.12898 5.23894 5.25835 5.34801 5.41968 5.44411 5.47283 5.89969 6.11268 6.12136 6.42619 6.49252 6.60940 6.86892 7.13351 7.23093 7.56945 8.12221 8.71651 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.001371 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.556790 B =20417.259718 C =20847.888674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.195 3.805 5 N -0.498 5.498 6 C -0.101 4.101 7 C 0.597 3.403 8 O -0.585 6.585 9 N -0.707 5.707 10 C 0.132 3.868 11 C -0.089 4.089 12 H 0.082 0.918 13 C -0.149 4.149 14 C 0.068 3.932 15 N -0.682 5.682 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.040 3.960 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.248 0.752 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.345 0.655 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 -34.554 -1.734 38.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.089 4.089 5 N -0.217 5.217 6 C -0.229 4.229 7 C 0.385 3.615 8 O -0.466 6.466 9 N -0.357 5.357 10 C 0.008 3.992 11 C -0.108 4.108 12 H 0.100 0.900 13 C -0.206 4.206 14 C -0.061 4.061 15 N -0.316 5.316 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.264 0.736 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.165 0.835 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.455 -34.294 -2.164 37.678 hybrid contribution -0.540 0.871 0.516 1.147 sum -15.995 -33.423 -1.649 37.089 Atomic orbital electron populations 1.22164 0.93522 1.04421 1.02508 1.22341 0.95960 0.77167 1.07236 1.45816 1.47134 1.14316 1.05718 1.25920 1.01351 0.86452 0.95207 1.70541 1.19710 1.21487 1.09974 1.20476 1.15178 0.96030 0.91184 1.17248 0.76085 0.82021 0.86170 1.90757 1.57215 1.83724 1.14856 1.45756 1.66134 1.12482 1.11352 1.21298 1.00085 0.84757 0.93058 1.21200 0.98568 0.93679 0.97335 0.90000 1.21858 0.97021 1.01523 1.00194 1.21945 0.98867 0.91027 0.94272 1.60080 1.41738 1.10264 1.19483 1.21544 1.00840 0.90249 0.94239 1.20888 0.82911 0.84227 0.89499 1.90485 1.62177 1.80720 1.17568 1.41932 1.54073 1.15526 1.09488 1.19720 1.38192 0.97003 0.91479 0.90319 1.26041 0.97106 1.00171 0.97888 1.69683 1.45686 1.29072 1.11727 0.84867 0.78130 0.77428 0.77885 1.19768 1.19552 1.19612 1.22779 1.01479 0.91385 0.94450 0.93213 0.92045 0.88356 0.85638 0.87360 0.73614 0.75008 0.91543 0.91439 0.92632 0.91722 0.92218 0.90064 0.93811 0.83516 0.91518 0.87774 0.76959 0.91305 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.08 10.24 71.98 0.74 0.66 16 2 C 0.09 0.01 6.84 86.37 0.59 0.60 16 3 N -0.45 -3.93 2.73 -528.38 -1.44 -5.37 16 4 C 0.20 2.11 12.55 180.10 2.26 4.38 16 5 N -0.50 -9.60 11.01 -188.82 -2.08 -11.68 16 6 C -0.10 -2.18 6.98 40.51 0.28 -1.89 16 7 C 0.60 15.52 7.81 86.63 0.68 16.19 16 8 O -0.58 -18.38 16.88 -4.08 -0.07 -18.45 16 9 N -0.71 -15.97 5.28 -466.47 -2.46 -18.44 16 10 C 0.13 2.86 5.06 86.38 0.44 3.30 16 11 C -0.09 -1.91 2.63 -10.79 -0.03 -1.94 16 12 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.15 -3.07 8.84 71.98 0.64 -2.44 16 14 C 0.07 1.64 5.14 86.31 0.44 2.08 16 15 N -0.68 -22.05 6.12 -517.92 -3.17 -25.23 16 16 C 0.06 2.25 6.17 85.56 0.53 2.77 16 17 C 0.44 21.33 7.82 87.66 0.69 22.01 16 18 O -0.62 -35.29 15.78 -3.06 -0.05 -35.34 16 19 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 20 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.34 13.05 21.66 0.28 -50.05 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.04 0.62 11.26 83.72 0.94 1.56 16 29 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.25 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.41 8.63 7.37 -92.71 -0.68 7.95 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.29 6.68 -2.39 -0.02 1.28 16 39 H 0.06 1.22 7.18 -2.39 -0.02 1.20 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.34 11.64 6.68 -89.69 -0.60 11.04 16 44 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 47 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -79.84 406.76 -0.13 -79.96 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -1.02 Total: 42.12 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 9.47 Total: 28.56 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -10.49 Total: -142.40 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.12 Total: -53.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.84 -0.13 -79.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.919 kcal (2) G-P(sol) polarization free energy of solvation -79.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds