Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.34258 * 125.75105 * 125.00174 * 3 2 1 5 5 C 1.38043 * 107.42059 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41969 * 179.97438 * 5 4 3 7 7 O 1.21606 * 119.99978 * 353.84872 * 6 5 4 8 8 N 1.34784 * 119.99980 * 173.84306 * 6 5 4 9 9 C 1.46495 * 119.99869 * 1.99368 * 8 6 5 10 10 C 1.46499 * 119.99669 * 181.99531 * 8 6 5 11 11 C 1.52997 * 109.47476 * 90.00197 * 10 8 6 12 12 N 1.46894 * 109.47271 * 179.97438 * 11 10 8 13 13 C 1.46898 * 111.00135 * 66.04748 * 12 11 10 14 14 C 1.46908 * 111.00005 * 190.00018 * 12 11 10 15 15 C 1.50693 * 109.46922 * 170.00039 * 14 12 11 16 16 O 1.21283 * 120.00383 * 359.97438 * 15 14 12 17 17 N 1.34779 * 119.99506 * 179.97438 * 15 14 12 18 18 C 1.37106 * 119.99842 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38943 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00310 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46825 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47525 * 119.99680 * 22 20 18 25 25 H 1.48500 * 109.46904 * 239.99808 * 22 20 18 26 26 C 1.41298 * 107.16476 * 359.97438 * 5 4 3 27 27 N 1.30446 * 108.02460 * 359.71965 * 26 5 4 28 28 H 1.09000 * 109.47101 * 59.99391 * 1 2 3 29 29 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47181 * 300.00496 * 1 2 3 31 31 H 1.08999 * 109.47299 * 119.99852 * 2 1 3 32 32 H 1.08999 * 109.47481 * 240.00407 * 2 1 3 33 33 H 1.08008 * 126.29422 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.46946 * 60.16113 * 9 8 6 35 35 H 1.09005 * 109.46998 * 180.15956 * 9 8 6 36 36 H 1.08999 * 109.47519 * 300.15846 * 9 8 6 37 37 H 1.08998 * 109.46893 * 210.00166 * 10 8 6 38 38 H 1.09000 * 109.47550 * 329.99616 * 10 8 6 39 39 H 1.08998 * 109.47035 * 299.99883 * 11 10 8 40 40 H 1.09009 * 109.46907 * 59.99715 * 11 10 8 41 41 H 1.09002 * 109.47051 * 59.99819 * 13 12 11 42 42 H 1.09002 * 109.47294 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46983 * 300.00054 * 13 12 11 44 44 H 1.08997 * 109.46669 * 289.99941 * 14 12 11 45 45 H 1.08997 * 109.47023 * 49.99797 * 14 12 11 46 46 H 0.96993 * 120.00236 * 0.02562 * 17 15 14 47 47 H 0.96993 * 120.00473 * 180.02562 * 21 20 18 48 48 H 1.08001 * 125.98738 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5366 6 6 3.9326 4.2033 1.2337 7 8 4.4610 3.9022 2.2867 8 7 4.1343 5.4261 0.7039 9 6 3.4631 5.8043 -0.5422 10 6 5.0247 6.3770 1.3741 11 6 6.4510 6.1961 0.8508 12 7 7.3437 7.1499 1.5224 13 6 7.4561 6.8465 2.9553 14 6 8.6664 7.1725 0.8837 15 6 9.4694 8.3238 1.4320 16 8 8.9872 9.0539 2.2718 17 7 10.7235 8.5420 0.9891 18 6 11.4540 9.5897 1.4876 19 1 11.0245 10.2399 2.2354 20 6 12.7466 9.8150 1.0307 21 7 13.2694 9.0236 0.1211 22 14 13.7421 11.2421 1.7103 23 1 12.9323 11.9760 2.7157 24 1 14.9768 10.7234 2.3518 25 1 14.1082 12.1618 0.6034 26 6 2.2986 3.4735 -0.6212 27 7 1.6826 2.3672 -0.9345 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.3134 1.4023 1.7344 34 1 2.3832 5.7550 -0.4026 35 1 3.7483 6.8205 -0.8146 36 1 3.7585 5.1188 -1.3365 37 1 4.6894 7.3940 1.1708 38 1 5.0064 6.1964 2.4489 39 1 6.7863 5.1791 1.0540 40 1 6.4693 6.3768 -0.2241 41 1 7.8584 5.8416 3.0834 42 1 8.1231 7.5675 3.4281 43 1 6.4707 6.9051 3.4175 44 1 9.1855 6.2365 1.0901 45 1 8.5479 7.2924 -0.1932 46 1 11.1090 7.9583 0.3173 47 1 14.1719 9.1806 -0.1976 48 1 2.2329 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482586000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = 37.551441 kcal Electronic energy + Delta-G solvation = -28435.661277 eV Core-core repulsion = 24335.817168 eV Total energy + Delta-G solvation = -4099.844109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80182 -39.62787 -38.49746 -36.64085 -35.57332 -34.86873 -33.79460 -31.22581 -30.95677 -30.88586 -29.18306 -27.63964 -27.15084 -25.44898 -24.60614 -23.87565 -22.31927 -21.21719 -20.86837 -19.61333 -19.08000 -17.79981 -17.67186 -16.59262 -16.45220 -16.15186 -15.93174 -15.41209 -15.10735 -14.92109 -14.64285 -14.50380 -14.29464 -13.93375 -13.79452 -13.49474 -13.37775 -13.19902 -13.15528 -12.93473 -12.70135 -12.67025 -12.06759 -12.04251 -12.02286 -11.76867 -11.46782 -11.30398 -11.25016 -11.15426 -10.88582 -10.67688 -10.30897 -10.18539 -9.97966 -9.94903 -9.44275 -9.07788 -8.82314 -8.35242 -7.92893 -7.78758 -6.37572 -3.78168 1.21065 1.87546 1.92237 2.82190 3.19361 3.26664 3.29640 3.37128 3.91231 3.96159 4.13161 4.32863 4.35125 4.37917 4.47771 4.57396 4.62817 4.86463 4.95887 5.01269 5.05579 5.06389 5.16440 5.22719 5.27811 5.29128 5.33066 5.41958 5.53173 5.59745 5.76078 5.83759 5.88855 6.00011 6.05018 6.05289 6.14089 6.33691 6.41134 6.42891 6.67267 7.16250 7.26218 7.34553 7.46535 7.59559 8.11443 8.12030 8.66822 9.22785 9.59565 10.11674 10.80386 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.001680 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.373620 B =16667.453004 C =16765.059349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.127 3.873 5 C -0.291 4.291 6 C 0.594 3.406 7 O -0.546 6.546 8 N -0.610 5.610 9 C 0.069 3.931 10 C 0.120 3.880 11 C 0.041 3.959 12 N -0.516 5.516 13 C 0.021 3.979 14 C 0.047 3.953 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.059 3.941 27 N -0.298 5.298 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.187 0.813 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.015 0.985 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 -18.191 -4.379 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.141 5.141 4 C -0.024 4.024 5 C -0.306 4.306 6 C 0.383 3.617 7 O -0.425 6.425 8 N -0.343 5.343 9 C -0.074 4.074 10 C -0.002 4.002 11 C -0.088 4.088 12 N -0.241 5.241 13 C -0.127 4.127 14 C -0.084 4.084 15 C 0.231 3.769 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.128 4.128 27 N -0.118 5.118 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -25.551 -18.094 -4.214 31.591 hybrid contribution 1.789 -0.197 0.299 1.825 sum -23.761 -18.292 -3.915 30.241 Atomic orbital electron populations 1.22057 0.93337 1.03165 1.03784 1.21846 0.96479 0.76904 1.04351 1.48690 1.34325 1.10756 1.20294 1.22992 0.91445 0.93661 0.94332 1.20229 1.11587 0.95385 1.03435 1.17271 0.79734 0.80840 0.83852 1.90784 1.51202 1.77720 1.22761 1.47558 1.46793 1.14417 1.25562 1.22308 0.97019 1.02115 0.86000 1.21513 0.88314 0.92018 0.98369 1.22452 0.93057 0.94371 0.98930 1.61535 1.10421 1.48734 1.03362 1.22578 1.02503 0.99415 0.88202 1.21854 0.89520 0.97672 0.99400 1.19737 0.82926 0.87858 0.86354 1.90480 1.70565 1.49727 1.35264 1.41878 1.11846 1.28444 1.38125 1.19756 0.95274 1.06332 1.21293 0.87847 1.25251 0.97249 0.98872 0.96640 1.69622 1.16606 1.38397 1.29825 0.85806 0.79297 0.80573 0.78699 1.19218 1.20834 1.20803 1.25234 0.94160 0.98042 0.95348 1.77168 1.24161 0.97169 1.13289 0.90913 0.90409 0.91932 0.88203 0.89227 0.79600 0.91431 0.89828 0.91450 0.89325 0.89421 0.94789 0.90972 0.96616 0.88653 0.91971 0.93509 0.89491 0.77522 0.91995 0.77564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.09 37.16 0.38 -0.26 16 2 C 0.12 0.52 7.21 -4.04 -0.03 0.49 16 3 N -0.36 -2.84 3.65 -60.80 -0.22 -3.07 16 4 C 0.13 1.11 11.25 -16.56 -0.19 0.93 16 5 C -0.29 -3.00 6.04 -105.07 -0.63 -3.64 16 6 C 0.59 7.50 7.67 -12.52 -0.10 7.40 16 7 O -0.55 -8.83 16.47 5.27 0.09 -8.74 16 8 N -0.61 -6.57 2.87 -182.85 -0.53 -7.10 16 9 C 0.07 0.46 8.55 59.84 0.51 0.97 16 10 C 0.12 1.50 5.31 -4.04 -0.02 1.48 16 11 C 0.04 0.58 5.28 -3.83 -0.02 0.56 16 12 N -0.52 -9.03 4.50 -244.37 -1.10 -10.13 16 13 C 0.02 0.37 8.96 60.06 0.54 0.91 16 14 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 15 C 0.45 10.73 7.47 -10.99 -0.08 10.65 16 16 O -0.58 -15.70 13.91 5.55 0.08 -15.62 16 17 N -0.57 -14.57 5.29 -10.97 -0.06 -14.63 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 22 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.06 0.51 9.91 -16.98 -0.17 0.34 16 27 N -0.30 -2.82 12.34 30.86 0.38 -2.44 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.18 8.06 -51.93 -0.42 -0.24 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.19 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.07 0.34 6.31 -51.93 -0.33 0.01 16 35 H 0.08 0.48 7.80 -51.93 -0.40 0.07 16 36 H 0.07 0.39 6.64 -51.93 -0.34 0.04 16 37 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 38 H 0.09 1.25 5.81 -51.93 -0.30 0.95 16 39 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.07 0.92 7.93 -51.92 -0.41 0.51 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 43 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 44 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 45 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.21 1.18 4.17 -52.49 -0.22 0.97 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -36.16 394.58 -6.90 -43.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.10 Total: 7.96 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.08 Total: 12.64 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.80 Total: -61.47 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.16 Total: -24.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.16 -6.90 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482586000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.605 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds