Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.34258 * 125.75105 * 125.00174 * 3 2 1 5 5 C 1.38043 * 107.42059 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41969 * 179.97438 * 5 4 3 7 7 O 1.21606 * 119.99978 * 353.84872 * 6 5 4 8 8 N 1.34784 * 119.99980 * 173.84306 * 6 5 4 9 9 C 1.46495 * 119.99869 * 1.99368 * 8 6 5 10 10 C 1.46499 * 119.99669 * 181.99531 * 8 6 5 11 11 C 1.52997 * 109.47476 * 90.00197 * 10 8 6 12 12 N 1.46894 * 109.47271 * 179.97438 * 11 10 8 13 13 C 1.46898 * 111.00135 * 66.04748 * 12 11 10 14 14 C 1.46908 * 111.00005 * 190.00018 * 12 11 10 15 15 C 1.50693 * 109.46922 * 170.00039 * 14 12 11 16 16 O 1.21283 * 120.00383 * 359.97438 * 15 14 12 17 17 N 1.34779 * 119.99506 * 179.97438 * 15 14 12 18 18 C 1.37106 * 119.99842 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38943 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00310 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46825 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47525 * 119.99680 * 22 20 18 25 25 H 1.48500 * 109.46904 * 239.99808 * 22 20 18 26 26 C 1.41298 * 107.16476 * 359.97438 * 5 4 3 27 27 N 1.30446 * 108.02460 * 359.71965 * 26 5 4 28 28 H 1.09000 * 109.47101 * 59.99391 * 1 2 3 29 29 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47181 * 300.00496 * 1 2 3 31 31 H 1.08999 * 109.47299 * 119.99852 * 2 1 3 32 32 H 1.08999 * 109.47481 * 240.00407 * 2 1 3 33 33 H 1.08008 * 126.29422 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.46946 * 60.16113 * 9 8 6 35 35 H 1.09005 * 109.46998 * 180.15956 * 9 8 6 36 36 H 1.08999 * 109.47519 * 300.15846 * 9 8 6 37 37 H 1.08998 * 109.46893 * 210.00166 * 10 8 6 38 38 H 1.09000 * 109.47550 * 329.99616 * 10 8 6 39 39 H 1.08998 * 109.47035 * 299.99883 * 11 10 8 40 40 H 1.09009 * 109.46907 * 59.99715 * 11 10 8 41 41 H 1.09002 * 109.47051 * 59.99819 * 13 12 11 42 42 H 1.09002 * 109.47294 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46983 * 300.00054 * 13 12 11 44 44 H 1.08997 * 109.46669 * 289.99941 * 14 12 11 45 45 H 1.08997 * 109.47023 * 49.99797 * 14 12 11 46 46 H 0.96993 * 120.00236 * 0.02562 * 17 15 14 47 47 H 0.96993 * 120.00473 * 180.02562 * 21 20 18 48 48 H 1.08001 * 125.98738 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5366 6 6 3.9326 4.2033 1.2337 7 8 4.4610 3.9022 2.2867 8 7 4.1343 5.4261 0.7039 9 6 3.4631 5.8043 -0.5422 10 6 5.0247 6.3770 1.3741 11 6 6.4510 6.1961 0.8508 12 7 7.3437 7.1499 1.5224 13 6 7.4561 6.8465 2.9553 14 6 8.6664 7.1725 0.8837 15 6 9.4694 8.3238 1.4320 16 8 8.9872 9.0539 2.2718 17 7 10.7235 8.5420 0.9891 18 6 11.4540 9.5897 1.4876 19 1 11.0245 10.2399 2.2354 20 6 12.7466 9.8150 1.0307 21 7 13.2694 9.0236 0.1211 22 14 13.7421 11.2421 1.7103 23 1 12.9323 11.9760 2.7157 24 1 14.9768 10.7234 2.3518 25 1 14.1082 12.1618 0.6034 26 6 2.2986 3.4735 -0.6212 27 7 1.6826 2.3672 -0.9345 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.3134 1.4023 1.7344 34 1 2.3832 5.7550 -0.4026 35 1 3.7483 6.8205 -0.8146 36 1 3.7585 5.1188 -1.3365 37 1 4.6894 7.3940 1.1708 38 1 5.0064 6.1964 2.4489 39 1 6.7863 5.1791 1.0540 40 1 6.4693 6.3768 -0.2241 41 1 7.8584 5.8416 3.0834 42 1 8.1231 7.5675 3.4281 43 1 6.4707 6.9051 3.4175 44 1 9.1855 6.2365 1.0901 45 1 8.5479 7.2924 -0.1932 46 1 11.1090 7.9583 0.3173 47 1 14.1719 9.1806 -0.1976 48 1 2.2329 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482586000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = 10.442945 kcal Electronic energy + Delta-G solvation = -28436.836789 eV Core-core repulsion = 24335.817168 eV Total energy + Delta-G solvation = -4101.019621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45561 -40.63023 -40.19641 -38.05440 -36.56217 -35.84043 -35.36691 -33.26724 -31.82249 -31.54979 -30.08026 -29.08912 -27.94424 -26.98625 -25.81795 -24.71833 -23.24842 -22.14182 -21.63413 -20.98728 -20.39188 -19.83536 -18.34834 -17.86556 -17.39020 -17.24133 -16.77462 -16.56906 -16.49073 -16.09593 -16.01691 -15.63346 -15.41055 -15.24764 -15.00263 -14.72281 -14.30801 -14.19092 -13.94310 -13.90927 -13.75455 -13.44348 -13.39223 -13.10748 -13.00193 -12.97230 -12.59190 -12.53443 -12.46362 -12.42548 -12.37389 -12.09812 -11.87508 -11.78510 -11.44927 -10.88600 -10.59023 -10.31324 -9.98247 -9.83737 -9.56338 -9.26202 -8.44697 -5.93235 0.51651 1.18525 1.37951 1.40938 1.43070 1.57422 1.96899 2.06943 2.31224 2.43069 2.87355 3.22001 3.41956 3.47805 3.77969 3.84138 4.01172 4.02431 4.07792 4.15909 4.24608 4.34386 4.34647 4.38324 4.41611 4.49937 4.53164 4.57016 4.62690 4.65738 4.69946 4.79097 4.86270 4.88226 4.93866 4.96695 5.19588 5.20616 5.42091 5.43418 5.54708 5.86053 5.87747 6.05049 6.16053 6.41880 6.55594 6.62727 7.15115 7.22186 7.58357 8.14257 8.73046 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.001680 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.373620 B =16667.453004 C =16765.059349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.357 5.357 4 C 0.128 3.872 5 C -0.316 4.316 6 C 0.588 3.412 7 O -0.593 6.593 8 N -0.607 5.607 9 C 0.060 3.940 10 C 0.126 3.874 11 C 0.050 3.950 12 N -0.527 5.527 13 C 0.029 3.971 14 C 0.058 3.942 15 C 0.443 3.557 16 O -0.612 6.612 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.066 3.934 27 N -0.321 5.321 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.093 0.907 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.490 -19.024 -5.831 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 N -0.136 5.136 4 C -0.025 4.025 5 C -0.331 4.331 6 C 0.380 3.620 7 O -0.476 6.476 8 N -0.339 5.339 9 C -0.081 4.081 10 C 0.003 3.997 11 C -0.079 4.079 12 N -0.252 5.252 13 C -0.119 4.119 14 C -0.073 4.073 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.121 4.121 27 N -0.141 5.141 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.111 0.889 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -26.458 -18.953 -5.729 33.046 hybrid contribution 1.972 -0.019 0.736 2.105 sum -24.485 -18.972 -4.993 31.375 Atomic orbital electron populations 1.22015 0.93095 1.04254 1.02410 1.22237 0.96688 0.75356 1.06187 1.49010 1.33551 1.11611 1.19422 1.23294 0.91089 0.93540 0.94567 1.20190 1.12655 0.95688 1.04566 1.17648 0.79502 0.81485 0.83403 1.90750 1.53266 1.78712 1.24827 1.47611 1.46198 1.13560 1.26504 1.22603 0.97874 1.03248 0.84419 1.21344 0.87946 0.93072 0.97336 1.22459 0.92929 0.92744 0.99724 1.61508 1.10156 1.50302 1.03207 1.22418 1.02502 0.98332 0.88678 1.21747 0.89538 0.95509 1.00528 1.20687 0.82535 0.88477 0.85252 1.90460 1.71242 1.51406 1.36684 1.41936 1.12501 1.28287 1.38518 1.19711 0.96532 1.07603 1.22223 0.90234 1.26031 0.97572 1.01124 0.96572 1.69681 1.17147 1.39350 1.30107 0.84864 0.77708 0.77547 0.78170 1.19770 1.19746 1.19564 1.25594 0.93072 0.98736 0.94650 1.77137 1.24903 0.97798 1.14256 0.92586 0.88102 0.92891 0.85588 0.88220 0.78176 0.89577 0.88388 0.90115 0.87959 0.91610 0.95930 0.88901 0.96302 0.92091 0.90530 0.92160 0.86778 0.77074 0.91364 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.09 71.98 0.73 -0.25 16 2 C 0.11 0.72 7.21 86.38 0.62 1.34 16 3 N -0.36 -5.09 3.65 -346.29 -1.26 -6.35 16 4 C 0.13 2.11 11.25 84.28 0.95 3.05 16 5 C -0.32 -6.19 6.04 -20.15 -0.12 -6.31 16 6 C 0.59 14.57 7.67 86.66 0.66 15.24 16 7 O -0.59 -19.51 16.47 -4.05 -0.07 -19.57 16 8 N -0.61 -12.22 2.87 -850.67 -2.44 -14.66 16 9 C 0.06 0.64 8.55 127.77 1.09 1.73 16 10 C 0.13 3.01 5.31 86.38 0.46 3.47 16 11 C 0.05 1.34 5.28 86.30 0.46 1.79 16 12 N -0.53 -18.04 4.50 -927.06 -4.17 -22.21 16 13 C 0.03 1.03 8.96 127.69 1.14 2.18 16 14 C 0.06 2.11 5.45 85.55 0.47 2.58 16 15 C 0.44 21.60 7.47 87.65 0.66 22.26 16 16 O -0.61 -34.27 13.91 -3.04 -0.04 -34.31 16 17 N -0.57 -30.05 5.29 -307.00 -1.62 -31.67 16 18 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 20 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 21 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 22 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 C 0.07 1.02 9.91 85.65 0.85 1.87 16 27 N -0.32 -5.59 12.34 -56.27 -0.69 -6.29 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.13 0.13 8.06 -2.39 -0.02 0.11 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.09 0.62 6.31 -2.39 -0.02 0.61 16 35 H 0.10 0.80 7.80 -2.38 -0.02 0.78 16 36 H 0.08 0.68 6.64 -2.39 -0.02 0.67 16 37 H 0.10 2.15 7.92 -2.39 -0.02 2.14 16 38 H 0.07 1.88 5.81 -2.39 -0.01 1.86 16 39 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 40 H 0.09 2.10 7.93 -2.38 -0.02 2.08 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.06 2.62 5.82 -2.39 -0.01 2.61 16 43 H 0.08 2.48 6.47 -2.39 -0.02 2.47 16 44 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 45 H 0.11 3.55 7.93 -2.39 -0.02 3.53 16 46 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.23 2.04 4.17 -2.91 -0.01 2.03 16 Total: -1.00 -80.00 394.58 1.51 -78.49 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.26 Total: 30.65 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 9.24 Total: 30.45 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -9.91 Total: -131.16 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.11 Total: -53.89 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -80.00 1.51 -78.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482586000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.935 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds