Wall clock time and date at job start Tue Mar 31 2020 20:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.47009 * 2 1 4 4 C 1.35397 * 126.43849 * 264.97597 * 3 2 1 5 5 C 1.35569 * 107.15916 * 180.02562 * 4 3 2 6 6 N 1.33098 * 108.34950 * 359.74068 * 5 4 3 7 7 C 1.31610 * 109.09610 * 0.42998 * 6 5 4 8 8 C 1.47407 * 125.86607 * 179.83248 * 7 6 5 9 9 O 1.21603 * 120.00183 * 179.68948 * 8 7 6 10 10 N 1.34778 * 119.99962 * 359.69616 * 8 7 6 11 11 C 1.46499 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47210 * 34.99777 * 11 10 8 13 13 C 1.53000 * 109.46933 * 274.99442 * 11 10 8 14 14 C 1.53004 * 109.46956 * 155.00083 * 11 10 8 15 15 C 1.53008 * 109.46689 * 294.99729 * 14 11 10 16 16 N 1.46902 * 109.46622 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46990 * 180.02562 * 17 16 15 19 19 O 1.21287 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99812 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99796 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99739 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00310 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47545 * 89.99653 * 25 23 21 27 27 H 1.48498 * 109.47176 * 210.00238 * 25 23 21 28 28 H 1.48507 * 109.47046 * 329.99813 * 25 23 21 29 29 H 1.08998 * 109.47088 * 300.00126 * 1 2 3 30 30 H 1.08994 * 109.47250 * 60.00156 * 1 2 3 31 31 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47237 * 240.00390 * 2 1 3 33 33 H 1.09002 * 109.47194 * 119.99501 * 2 1 3 34 34 H 1.08000 * 126.42157 * 0.05601 * 4 3 2 35 35 H 1.07999 * 125.82297 * 180.02562 * 5 4 3 36 36 H 0.97003 * 119.99664 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47447 * 300.00190 * 13 11 10 38 38 H 1.09004 * 109.47093 * 60.00613 * 13 11 10 39 39 H 1.09000 * 109.47134 * 179.97438 * 13 11 10 40 40 H 1.09006 * 109.46807 * 175.00088 * 14 11 10 41 41 H 1.08995 * 109.47458 * 54.99705 * 14 11 10 42 42 H 1.08990 * 109.46924 * 60.00331 * 15 14 11 43 43 H 1.09004 * 109.46978 * 300.00208 * 15 14 11 44 44 H 1.00896 * 111.00219 * 303.95583 * 16 15 14 45 45 H 1.09002 * 109.46991 * 299.99841 * 17 16 15 46 46 H 1.09000 * 109.47202 * 60.00133 * 17 16 15 47 47 H 0.97000 * 120.00083 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99752 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3764 2.1077 -1.0851 5 6 2.7665 3.3271 -0.6391 6 7 2.6444 3.3473 0.6861 7 6 2.1987 2.1785 1.0953 8 6 1.9336 1.7970 2.4943 9 8 1.5158 0.6845 2.7523 10 7 2.1542 2.6811 3.4873 11 6 1.8912 2.3017 4.8777 12 1 2.1333 1.2484 5.0188 13 6 0.4132 2.5329 5.1986 14 6 2.7548 3.1530 5.8107 15 6 4.2317 2.8295 5.5751 16 7 5.0608 3.6465 6.4713 17 6 6.4882 3.3616 6.2732 18 6 7.3054 4.2158 7.2079 19 8 6.7529 4.9857 7.9649 20 7 8.6499 4.1234 7.2033 21 6 9.3934 4.9009 8.0533 22 1 8.9016 5.5877 8.7262 23 6 10.7796 4.8060 8.0482 24 7 11.4923 5.5517 8.8626 25 14 11.6304 3.6197 6.8828 26 1 11.9209 4.3088 5.5999 27 1 12.9012 3.1526 7.4927 28 1 10.7453 2.4545 6.6295 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3547 1.7778 -2.1132 35 1 3.1125 4.1442 -1.2547 36 1 2.4877 3.5684 3.2814 37 1 0.1712 3.5862 5.0574 38 1 -0.2021 1.9264 4.5339 39 1 0.2175 2.2501 6.2329 40 1 2.4955 2.9338 6.8465 41 1 2.5773 4.2090 5.6073 42 1 4.4909 3.0487 4.5394 43 1 4.4092 1.7734 5.7785 44 1 4.8672 4.6289 6.3476 45 1 6.6810 2.3091 6.4814 46 1 6.7636 3.5845 5.2424 47 1 9.0917 3.5074 6.5982 48 1 12.4600 5.4857 8.8588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482826191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:08 Heat of formation + Delta-G solvation = -11.252104 kcal Electronic energy + Delta-G solvation = -28452.985324 eV Core-core repulsion = 24351.024935 eV Total energy + Delta-G solvation = -4101.960389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67648 -39.87660 -38.47081 -37.04869 -35.58830 -34.94396 -33.85376 -32.16250 -31.62931 -30.73250 -29.88067 -29.22789 -26.37854 -24.83123 -24.04919 -23.52808 -22.21977 -21.84426 -20.95243 -20.37021 -19.34405 -18.35670 -18.14381 -16.89071 -16.53877 -16.21857 -16.00771 -15.57777 -15.11104 -14.97768 -14.91206 -14.46601 -14.35360 -14.21871 -13.98041 -13.86333 -13.79622 -13.45734 -13.12437 -12.97437 -12.76431 -12.56629 -12.44338 -12.30456 -12.12329 -11.86453 -11.72089 -11.39859 -11.19259 -11.13924 -11.00701 -10.62792 -10.57448 -10.45264 -10.22240 -9.95441 -9.54912 -9.48550 -8.92637 -8.56036 -8.17188 -8.10509 -6.28949 -3.80186 0.99647 2.01936 2.23888 2.92593 3.04902 3.08699 3.09445 3.16713 3.77060 3.95598 4.03743 4.12536 4.17143 4.34034 4.48656 4.68446 4.75301 4.76300 4.84061 4.88025 4.99649 5.09867 5.14725 5.19980 5.24078 5.24663 5.31357 5.47577 5.50624 5.57726 5.65077 5.68512 5.79219 5.83854 5.86691 5.91913 5.97198 6.05934 6.17615 6.24194 6.49775 7.05520 7.11754 7.47126 7.59932 7.61757 7.81170 8.16996 8.62288 8.97296 9.44932 9.85426 10.84201 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.002058 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.512572 B =13598.990664 C =14804.731386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.029 4.029 5 C -0.027 4.027 6 N -0.445 5.445 7 C 0.137 3.863 8 C 0.609 3.391 9 O -0.541 6.541 10 N -0.698 5.698 11 C 0.144 3.856 12 H 0.093 0.907 13 C -0.162 4.162 14 C -0.125 4.125 15 C 0.058 3.942 16 N -0.669 5.669 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 -12.034 -22.690 34.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.168 4.168 5 C -0.180 4.180 6 N -0.166 5.166 7 C -0.122 4.122 8 C 0.393 3.607 9 O -0.418 6.418 10 N -0.350 5.350 11 C 0.040 3.960 12 H 0.111 0.889 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.301 5.301 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.117 -12.204 -20.746 33.372 hybrid contribution 1.144 -0.693 -2.622 2.943 sum -21.973 -12.897 -23.368 34.572 Atomic orbital electron populations 1.22062 0.93475 1.03483 1.02986 1.22144 0.96370 0.78721 1.05443 1.45287 1.45062 1.12928 1.06122 1.22951 1.06613 0.94079 0.93140 1.22455 1.07015 0.97563 0.90982 1.70203 1.15076 1.18587 1.12774 1.22665 1.10635 0.88559 0.90327 1.16439 0.77707 0.84502 0.82036 1.90796 1.46712 1.20688 1.83564 1.45830 1.65929 1.17178 1.06028 1.21093 0.95186 1.00721 0.78984 0.88906 1.22165 0.95319 1.02261 1.02312 1.21892 0.93954 1.00081 1.00443 1.21980 0.92381 0.98711 0.94078 1.60059 1.03478 1.11577 1.55012 1.21700 0.88766 1.00600 0.97416 1.19716 0.82489 0.86885 0.87285 1.90560 1.70641 1.40756 1.42666 1.42213 1.05574 1.38450 1.36847 1.19436 0.88756 1.18674 1.16429 0.86269 1.25043 0.96090 0.97628 0.97469 1.69626 1.06606 1.39112 1.36836 0.86667 0.80191 0.81123 0.81395 1.19668 1.20176 1.19480 0.91355 0.92278 0.90253 0.88942 0.87148 0.80035 0.80452 0.75166 0.92182 0.92212 0.91061 0.88779 0.90997 0.95380 0.91098 0.83030 0.89558 0.93787 0.79699 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.23 37.16 0.38 -0.54 16 2 C 0.09 0.59 6.18 -4.04 -0.02 0.57 16 3 N -0.41 -3.49 2.76 -114.58 -0.32 -3.81 16 4 C -0.03 -0.20 11.53 -16.93 -0.20 -0.40 16 5 C -0.03 -0.23 11.85 -17.96 -0.21 -0.44 16 6 N -0.44 -4.88 10.89 -11.26 -0.12 -5.00 16 7 C 0.14 1.47 7.79 -154.52 -1.20 0.27 16 8 C 0.61 6.70 7.78 -12.53 -0.10 6.61 16 9 O -0.54 -6.66 14.17 5.28 0.07 -6.58 16 10 N -0.70 -6.62 4.53 -54.89 -0.25 -6.87 16 11 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 12 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 13 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 14 C -0.13 -1.17 5.01 -26.72 -0.13 -1.31 16 15 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 16 N -0.67 -10.38 6.12 -115.05 -0.70 -11.09 16 17 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 18 C 0.45 10.43 7.82 -10.99 -0.09 10.34 16 19 O -0.56 -15.36 15.78 5.55 0.09 -15.27 16 20 N -0.59 -14.36 5.09 -10.97 -0.06 -14.41 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -26.01 13.96 55.50 0.77 -25.24 16 25 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 29 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 33 H 0.11 0.85 6.64 -51.93 -0.34 0.51 16 34 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.41 3.75 8.28 -40.82 -0.34 3.41 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.32 7.75 -51.93 -0.40 -0.08 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -35.56 403.07 -8.35 -43.91 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.50 Total: 14.49 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.70 Total: 8.87 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.67 Total: -66.42 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.16 Total: -21.86 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.56 -8.35 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482826191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.654 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds