Wall clock time and date at job start Tue Mar 31 2020 20:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.47009 * 2 1 4 4 C 1.35397 * 126.43849 * 264.97597 * 3 2 1 5 5 C 1.35569 * 107.15916 * 180.02562 * 4 3 2 6 6 N 1.33098 * 108.34950 * 359.74068 * 5 4 3 7 7 C 1.31610 * 109.09610 * 0.42998 * 6 5 4 8 8 C 1.47407 * 125.86607 * 179.83248 * 7 6 5 9 9 O 1.21603 * 120.00183 * 179.68948 * 8 7 6 10 10 N 1.34778 * 119.99962 * 359.69616 * 8 7 6 11 11 C 1.46499 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47210 * 34.99777 * 11 10 8 13 13 C 1.53000 * 109.46933 * 274.99442 * 11 10 8 14 14 C 1.53004 * 109.46956 * 155.00083 * 11 10 8 15 15 C 1.53008 * 109.46689 * 294.99729 * 14 11 10 16 16 N 1.46902 * 109.46622 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46990 * 180.02562 * 17 16 15 19 19 O 1.21287 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99812 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99796 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99739 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00310 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47545 * 89.99653 * 25 23 21 27 27 H 1.48498 * 109.47176 * 210.00238 * 25 23 21 28 28 H 1.48507 * 109.47046 * 329.99813 * 25 23 21 29 29 H 1.08998 * 109.47088 * 300.00126 * 1 2 3 30 30 H 1.08994 * 109.47250 * 60.00156 * 1 2 3 31 31 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47237 * 240.00390 * 2 1 3 33 33 H 1.09002 * 109.47194 * 119.99501 * 2 1 3 34 34 H 1.08000 * 126.42157 * 0.05601 * 4 3 2 35 35 H 1.07999 * 125.82297 * 180.02562 * 5 4 3 36 36 H 0.97003 * 119.99664 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47447 * 300.00190 * 13 11 10 38 38 H 1.09004 * 109.47093 * 60.00613 * 13 11 10 39 39 H 1.09000 * 109.47134 * 179.97438 * 13 11 10 40 40 H 1.09006 * 109.46807 * 175.00088 * 14 11 10 41 41 H 1.08995 * 109.47458 * 54.99705 * 14 11 10 42 42 H 1.08990 * 109.46924 * 60.00331 * 15 14 11 43 43 H 1.09004 * 109.46978 * 300.00208 * 15 14 11 44 44 H 1.00896 * 111.00219 * 303.95583 * 16 15 14 45 45 H 1.09002 * 109.46991 * 299.99841 * 17 16 15 46 46 H 1.09000 * 109.47202 * 60.00133 * 17 16 15 47 47 H 0.97000 * 120.00083 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99752 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3764 2.1077 -1.0851 5 6 2.7665 3.3271 -0.6391 6 7 2.6444 3.3473 0.6861 7 6 2.1987 2.1785 1.0953 8 6 1.9336 1.7970 2.4943 9 8 1.5158 0.6845 2.7523 10 7 2.1542 2.6811 3.4873 11 6 1.8912 2.3017 4.8777 12 1 2.1333 1.2484 5.0188 13 6 0.4132 2.5329 5.1986 14 6 2.7548 3.1530 5.8107 15 6 4.2317 2.8295 5.5751 16 7 5.0608 3.6465 6.4713 17 6 6.4882 3.3616 6.2732 18 6 7.3054 4.2158 7.2079 19 8 6.7529 4.9857 7.9649 20 7 8.6499 4.1234 7.2033 21 6 9.3934 4.9009 8.0533 22 1 8.9016 5.5877 8.7262 23 6 10.7796 4.8060 8.0482 24 7 11.4923 5.5517 8.8626 25 14 11.6304 3.6197 6.8828 26 1 11.9209 4.3088 5.5999 27 1 12.9012 3.1526 7.4927 28 1 10.7453 2.4545 6.6295 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3547 1.7778 -2.1132 35 1 3.1125 4.1442 -1.2547 36 1 2.4877 3.5684 3.2814 37 1 0.1712 3.5862 5.0574 38 1 -0.2021 1.9264 4.5339 39 1 0.2175 2.2501 6.2329 40 1 2.4955 2.9338 6.8465 41 1 2.5773 4.2090 5.6073 42 1 4.4909 3.0487 4.5394 43 1 4.4092 1.7734 5.7785 44 1 4.8672 4.6289 6.3476 45 1 6.6810 2.3091 6.4814 46 1 6.7636 3.5845 5.2424 47 1 9.0917 3.5074 6.5982 48 1 12.4600 5.4857 8.8588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482826191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:07 Heat of formation + Delta-G solvation = -38.982613 kcal Electronic energy + Delta-G solvation = -28454.187809 eV Core-core repulsion = 24351.024935 eV Total energy + Delta-G solvation = -4103.162874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28739 -40.67083 -40.28878 -37.99839 -36.45817 -35.99837 -35.64452 -33.75890 -32.95377 -31.31174 -30.68011 -30.06932 -27.89699 -25.75540 -25.28242 -24.29649 -23.17959 -22.48382 -21.71741 -21.28204 -21.06525 -20.25727 -18.82174 -17.81931 -17.64593 -17.27391 -17.06182 -16.70595 -16.61446 -15.81141 -15.72051 -15.64262 -15.34904 -15.12217 -14.98241 -14.91922 -14.73506 -14.48526 -14.46629 -14.05077 -13.86705 -13.65054 -13.54180 -13.29188 -13.02711 -12.96561 -12.83682 -12.42560 -12.34714 -12.27743 -12.06640 -11.98072 -11.81899 -11.52221 -11.34768 -11.16078 -10.84874 -10.46657 -10.25708 -10.24142 -9.52315 -9.34236 -8.41878 -6.02738 0.32637 1.29915 1.34696 1.43227 1.43826 1.61776 1.94073 2.22306 2.27007 2.36974 2.68951 3.14291 3.28992 3.36607 3.73276 3.83112 3.88537 4.00432 4.04289 4.15147 4.19822 4.33592 4.39943 4.41011 4.42420 4.47536 4.48712 4.58287 4.68134 4.71392 4.77877 4.81076 4.92604 5.04315 5.13261 5.18298 5.24124 5.30543 5.46119 5.52023 5.65935 5.89489 5.92655 6.02906 6.31385 6.39225 6.58858 6.81541 6.87002 7.06488 7.38577 7.94714 8.75677 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.002058 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.512572 B =13598.990664 C =14804.731386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.009 4.009 5 C -0.050 4.050 6 N -0.468 5.468 7 C 0.103 3.897 8 C 0.605 3.395 9 O -0.562 6.562 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.084 0.916 13 C -0.157 4.157 14 C -0.116 4.116 15 C 0.063 3.937 16 N -0.684 5.684 17 C 0.061 3.939 18 C 0.449 3.551 19 O -0.612 6.612 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.224 0.776 35 H 0.198 0.802 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.346 0.654 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.884 -14.507 -26.330 37.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.095 5.095 4 C -0.149 4.149 5 C -0.203 4.203 6 N -0.190 5.190 7 C -0.155 4.155 8 C 0.390 3.610 9 O -0.441 6.441 10 N -0.345 5.345 11 C 0.047 3.953 12 H 0.102 0.898 13 C -0.215 4.215 14 C -0.154 4.154 15 C -0.066 4.066 16 N -0.317 5.317 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.157 1.157 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.241 0.759 35 H 0.215 0.785 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.165 0.835 45 H 0.128 0.872 46 H 0.091 0.909 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.326 -14.694 -24.384 36.804 hybrid contribution 1.110 0.166 -1.484 1.860 sum -22.216 -14.528 -25.868 37.064 Atomic orbital electron populations 1.22010 0.93162 1.04232 1.01938 1.22299 0.96587 0.77830 1.06175 1.45525 1.44467 1.13515 1.05985 1.23635 1.03813 0.93116 0.94287 1.22980 1.07764 0.99159 0.90435 1.70137 1.15509 1.19052 1.14338 1.22579 1.12861 0.89368 0.90669 1.16608 0.77428 0.84341 0.82616 1.90773 1.47826 1.21470 1.83988 1.45821 1.65581 1.17046 1.06026 1.21019 0.95637 1.00003 0.78659 0.89826 1.22112 0.94331 1.02364 1.02690 1.21797 0.92574 1.00510 1.00508 1.22012 0.92863 0.98098 0.93596 1.60072 1.03061 1.11822 1.56729 1.21620 0.88582 1.00112 0.96810 1.20947 0.82354 0.86158 0.86883 1.90538 1.71577 1.42817 1.44754 1.42043 1.05958 1.38545 1.36736 1.19017 0.89782 1.19586 1.17432 0.92569 1.26121 0.96245 0.99665 0.99396 1.69805 1.07350 1.41196 1.39008 0.85365 0.78814 0.78974 0.78381 1.18106 1.19901 1.15654 0.94253 0.91319 0.88638 0.85558 0.89014 0.75936 0.78490 0.74954 0.91665 0.93353 0.89937 0.88758 0.90371 0.94722 0.90797 0.83537 0.87172 0.90856 0.77522 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.23 71.98 0.74 -0.81 16 2 C 0.09 0.98 6.18 86.38 0.53 1.51 16 3 N -0.41 -6.30 2.76 -516.42 -1.42 -7.72 16 4 C -0.01 -0.10 11.53 83.53 0.96 0.86 16 5 C -0.05 -0.75 11.85 83.88 0.99 0.24 16 6 N -0.47 -9.91 10.89 -189.53 -2.06 -11.97 16 7 C 0.10 2.15 7.79 136.28 1.06 3.21 16 8 C 0.61 13.33 7.78 86.66 0.67 14.00 16 9 O -0.56 -14.03 14.17 -4.04 -0.06 -14.09 16 10 N -0.69 -12.90 4.53 -445.82 -2.02 -14.92 16 11 C 0.15 2.57 2.57 44.99 0.12 2.69 16 12 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 13 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 14 C -0.12 -2.02 5.01 30.60 0.15 -1.87 16 15 C 0.06 1.35 5.57 86.31 0.48 1.84 16 16 N -0.68 -20.28 6.12 -517.91 -3.17 -23.45 16 17 C 0.06 1.94 6.17 85.56 0.53 2.47 16 18 C 0.45 20.72 7.82 87.66 0.69 21.40 16 19 O -0.61 -34.46 15.78 -3.05 -0.05 -34.51 16 20 N -0.59 -28.47 5.09 -307.00 -1.56 -30.04 16 21 C -0.33 -19.56 10.16 84.04 0.85 -18.71 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 25 Si 0.96 39.36 27.74 68.60 1.90 41.26 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 29 H 0.04 0.63 7.85 -2.39 -0.02 0.61 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.13 0.47 8.13 -2.39 -0.02 0.45 16 33 H 0.09 1.36 6.64 -2.39 -0.02 1.35 16 34 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 35 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.41 7.36 8.28 -92.71 -0.77 6.59 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 0.72 7.75 -2.39 -0.02 0.70 16 43 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.35 10.77 8.43 -89.70 -0.76 10.01 16 45 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 48 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.29 403.07 -0.33 -83.62 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -1.12 Total: 43.55 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 8.93 Total: 24.72 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -9.94 Total: -144.55 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.11 Total: -48.60 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.26 kcal Total: -83.29 -0.33 -83.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482826191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.640 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds