Wall clock time and date at job start Tue Mar 31 2020 20:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47187 * 2 1 4 4 C 1.35399 * 126.43887 * 265.16396 * 3 2 1 5 5 C 1.35559 * 107.16039 * 180.22389 * 4 3 2 6 6 N 1.33108 * 108.35115 * 359.77019 * 5 4 3 7 7 C 1.31618 * 109.09067 * 0.02562 * 6 5 4 8 8 C 1.47414 * 125.85854 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99584 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00232 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99955 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 C 1.52996 * 109.46894 * 64.99698 * 14 11 10 16 16 N 1.46910 * 109.47126 * 180.02562 * 15 14 11 17 17 C 1.46902 * 110.99966 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46865 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00067 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99519 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00180 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99517 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99580 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00193 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46952 * 90.00313 * 25 23 21 27 27 H 1.48500 * 109.47319 * 210.00273 * 25 23 21 28 28 H 1.48496 * 109.47256 * 330.00739 * 25 23 21 29 29 H 1.08999 * 109.47046 * 60.00312 * 1 2 3 30 30 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47246 * 300.00087 * 1 2 3 32 32 H 1.08993 * 109.47133 * 239.99625 * 2 1 3 33 33 H 1.09005 * 109.46447 * 119.99994 * 2 1 3 34 34 H 1.07999 * 126.42344 * 359.96439 * 4 3 2 35 35 H 1.07994 * 125.82932 * 179.77038 * 5 4 3 36 36 H 0.96997 * 119.99935 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 39 39 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 40 40 H 1.08994 * 109.47510 * 185.00146 * 14 11 10 41 41 H 1.09001 * 109.47096 * 305.00009 * 14 11 10 42 42 H 1.08998 * 109.47867 * 299.99927 * 15 14 11 43 43 H 1.08993 * 109.47122 * 60.00537 * 15 14 11 44 44 H 1.00907 * 110.99301 * 303.95474 * 16 15 14 45 45 H 1.08996 * 109.46971 * 299.99569 * 17 16 15 46 46 H 1.09001 * 109.47288 * 59.99612 * 17 16 15 47 47 H 0.97002 * 119.99881 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99506 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3730 2.1088 -1.0854 5 6 2.7687 3.3261 -0.6390 6 7 2.6538 3.3439 0.6870 7 6 2.1991 2.1782 1.0953 8 6 1.9350 1.7964 2.4945 9 8 1.5139 0.6851 2.7522 10 7 2.1602 2.6788 3.4879 11 6 1.8982 2.2991 4.8783 12 1 1.0308 1.6402 4.9178 13 6 3.1181 1.5710 5.4466 14 6 1.6224 3.5554 5.7068 15 6 0.3319 4.2158 5.2175 16 7 0.0673 5.4224 6.0126 17 6 -1.1674 6.0841 5.5703 18 6 -1.4056 7.3144 6.4074 19 8 -0.6240 7.6106 7.2863 20 7 -2.4872 8.0855 6.1793 21 6 -2.7035 9.2051 6.9405 22 1 -2.0076 9.4688 7.7231 23 6 -3.8190 9.9998 6.7058 24 7 -4.0266 11.0726 7.4357 25 14 -5.0231 9.5433 5.3527 26 1 -6.0788 8.6583 5.9075 27 1 -5.6465 10.7761 4.8080 28 1 -4.3015 8.8322 4.2670 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 2.3495 1.7796 -2.1137 35 1 3.1177 4.1422 -1.2542 36 1 2.4964 3.5651 3.2823 37 1 2.9233 1.2889 6.4813 38 1 3.3145 0.6761 4.8564 39 1 3.9854 2.2300 5.4072 40 1 1.5153 3.2822 6.7565 41 1 2.4523 4.2533 5.5958 42 1 0.4389 4.4891 4.1678 43 1 -0.4980 3.5180 5.3285 44 1 0.0281 5.2052 6.9972 45 1 -1.0713 6.3699 4.5228 46 1 -2.0076 5.3991 5.6843 47 1 -3.1125 7.8484 5.4767 48 1 -4.8051 11.6276 7.2716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482826194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:10 Heat of formation + Delta-G solvation = -11.236050 kcal Electronic energy + Delta-G solvation = -28501.137068 eV Core-core repulsion = 24399.177375 eV Total energy + Delta-G solvation = -4101.959693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65053 -39.85910 -38.47204 -37.03930 -35.57113 -34.94141 -33.85543 -32.14720 -31.63099 -30.70066 -29.86190 -29.22507 -26.38196 -24.80289 -24.04707 -23.50830 -22.22192 -21.82868 -20.91572 -20.35898 -19.34661 -18.36630 -18.11953 -16.92789 -16.40165 -16.18695 -16.08424 -15.62769 -15.12986 -14.92082 -14.78386 -14.55464 -14.33542 -14.18982 -13.89141 -13.87513 -13.71222 -13.55727 -13.09382 -12.98531 -12.78035 -12.54430 -12.45062 -12.31130 -12.13486 -11.83260 -11.68676 -11.33234 -11.30381 -11.13352 -10.97142 -10.59746 -10.57561 -10.43373 -10.19148 -9.95549 -9.55092 -9.45894 -8.89989 -8.56822 -8.17531 -8.11086 -6.29109 -3.80309 1.01954 2.04073 2.26511 2.94772 3.04917 3.08449 3.11855 3.16591 3.76824 3.97264 4.04273 4.12405 4.18830 4.36348 4.51665 4.68900 4.76220 4.77822 4.89687 4.91969 4.96795 5.03214 5.17896 5.22161 5.25547 5.27666 5.31215 5.47768 5.53252 5.59990 5.63122 5.67221 5.80713 5.83792 5.89078 5.92095 5.96552 6.06469 6.19117 6.25953 6.52290 7.08579 7.11411 7.50212 7.59707 7.61523 7.83471 8.16832 8.62143 8.97151 9.44781 9.85262 10.84061 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.002134 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.382369 B =13115.242676 C =14320.397643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.414 5.414 4 C -0.030 4.030 5 C -0.026 4.026 6 N -0.443 5.443 7 C 0.137 3.863 8 C 0.609 3.391 9 O -0.542 6.542 10 N -0.697 5.697 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.126 4.126 15 C 0.058 3.942 16 N -0.668 5.668 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.350 0.650 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -25.571 -18.256 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.094 5.094 4 C -0.168 4.168 5 C -0.180 4.180 6 N -0.165 5.165 7 C -0.122 4.122 8 C 0.393 3.607 9 O -0.419 6.419 10 N -0.349 5.349 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.301 5.301 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.199 0.801 35 H 0.196 0.804 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.169 0.831 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.387 -25.101 -17.172 32.839 hybrid contribution -1.820 -0.940 -1.653 2.632 sum 10.567 -26.041 -18.825 33.826 Atomic orbital electron populations 1.22072 0.93429 1.03483 1.03143 1.22129 0.96436 0.78726 1.05288 1.45285 1.45162 1.12870 1.06131 1.22944 1.06705 0.94074 0.93098 1.22460 1.06992 0.97557 0.90962 1.70226 1.15032 1.18426 1.12782 1.22659 1.10582 0.88653 0.90306 1.16440 0.77664 0.84539 0.82021 1.90791 1.46756 1.20698 1.83691 1.45817 1.65805 1.17384 1.05873 1.21071 0.98922 0.96735 0.79208 0.89136 1.22170 0.97867 1.00708 1.01348 1.21884 0.99039 0.95687 0.99829 1.21980 0.95854 0.90637 0.98676 1.60071 1.36086 1.25263 1.08643 1.21703 0.91207 0.95448 1.00130 1.19716 0.83340 0.85994 0.87319 1.90562 1.46194 1.73127 1.34746 1.42213 1.22784 1.24879 1.33206 1.19437 1.09517 0.99554 1.14794 0.86267 1.25041 0.97520 0.95837 0.97812 1.69624 1.28762 1.14532 1.39262 0.86669 0.81817 0.78931 0.81976 1.19687 1.20166 1.19460 0.92211 0.90283 0.91271 0.89001 0.87236 0.80055 0.80440 0.74905 0.91201 0.92185 0.92052 0.89879 0.89846 0.90997 0.95543 0.83062 0.89512 0.93848 0.79696 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 10.23 37.16 0.38 -0.64 16 2 C 0.10 0.61 6.18 -4.04 -0.02 0.58 16 3 N -0.41 -3.54 2.76 -114.59 -0.32 -3.86 16 4 C -0.03 -0.21 11.53 -16.93 -0.20 -0.40 16 5 C -0.03 -0.23 11.85 -17.96 -0.21 -0.44 16 6 N -0.44 -4.97 10.90 -11.26 -0.12 -5.09 16 7 C 0.14 1.49 7.79 -154.52 -1.20 0.29 16 8 C 0.61 6.78 7.78 -12.53 -0.10 6.68 16 9 O -0.54 -6.71 14.16 5.28 0.07 -6.64 16 10 N -0.70 -6.76 4.53 -54.89 -0.25 -7.01 16 11 C 0.15 1.29 2.57 -67.93 -0.17 1.12 16 12 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 13 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 14 C -0.13 -1.18 5.01 -26.73 -0.13 -1.31 16 15 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 16 N -0.67 -10.37 6.13 -115.05 -0.70 -11.08 16 17 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 18 C 0.45 10.43 7.82 -10.98 -0.09 10.34 16 19 O -0.56 -15.36 15.78 5.55 0.09 -15.27 16 20 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 25 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 32 H 0.09 0.33 8.13 -51.93 -0.42 -0.10 16 33 H 0.11 0.83 6.64 -51.93 -0.34 0.48 16 34 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.41 3.95 8.28 -40.82 -0.34 3.61 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.37 7.91 5.76 -40.82 -0.24 7.68 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -35.55 403.05 -8.35 -43.90 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -7.50 Total: 14.83 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.70 Total: 8.87 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.67 Total: -66.68 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.16 Total: -21.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.55 -8.35 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482826194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.666 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds