Wall clock time and date at job start Tue Mar 31 2020 20:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47187 * 2 1 4 4 C 1.35399 * 126.43887 * 265.16396 * 3 2 1 5 5 C 1.35559 * 107.16039 * 180.22389 * 4 3 2 6 6 N 1.33108 * 108.35115 * 359.77019 * 5 4 3 7 7 C 1.31618 * 109.09067 * 0.02562 * 6 5 4 8 8 C 1.47414 * 125.85854 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99584 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00232 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99955 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 C 1.52996 * 109.46894 * 64.99698 * 14 11 10 16 16 N 1.46910 * 109.47126 * 180.02562 * 15 14 11 17 17 C 1.46902 * 110.99966 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46865 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00067 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99519 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00180 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99517 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99580 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00193 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46952 * 90.00313 * 25 23 21 27 27 H 1.48500 * 109.47319 * 210.00273 * 25 23 21 28 28 H 1.48496 * 109.47256 * 330.00739 * 25 23 21 29 29 H 1.08999 * 109.47046 * 60.00312 * 1 2 3 30 30 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47246 * 300.00087 * 1 2 3 32 32 H 1.08993 * 109.47133 * 239.99625 * 2 1 3 33 33 H 1.09005 * 109.46447 * 119.99994 * 2 1 3 34 34 H 1.07999 * 126.42344 * 359.96439 * 4 3 2 35 35 H 1.07994 * 125.82932 * 179.77038 * 5 4 3 36 36 H 0.96997 * 119.99935 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 39 39 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 40 40 H 1.08994 * 109.47510 * 185.00146 * 14 11 10 41 41 H 1.09001 * 109.47096 * 305.00009 * 14 11 10 42 42 H 1.08998 * 109.47867 * 299.99927 * 15 14 11 43 43 H 1.08993 * 109.47122 * 60.00537 * 15 14 11 44 44 H 1.00907 * 110.99301 * 303.95474 * 16 15 14 45 45 H 1.08996 * 109.46971 * 299.99569 * 17 16 15 46 46 H 1.09001 * 109.47288 * 59.99612 * 17 16 15 47 47 H 0.97002 * 119.99881 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99506 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3730 2.1088 -1.0854 5 6 2.7687 3.3261 -0.6390 6 7 2.6538 3.3439 0.6870 7 6 2.1991 2.1782 1.0953 8 6 1.9350 1.7964 2.4945 9 8 1.5139 0.6851 2.7522 10 7 2.1602 2.6788 3.4879 11 6 1.8982 2.2991 4.8783 12 1 1.0308 1.6402 4.9178 13 6 3.1181 1.5710 5.4466 14 6 1.6224 3.5554 5.7068 15 6 0.3319 4.2158 5.2175 16 7 0.0673 5.4224 6.0126 17 6 -1.1674 6.0841 5.5703 18 6 -1.4056 7.3144 6.4074 19 8 -0.6240 7.6106 7.2863 20 7 -2.4872 8.0855 6.1793 21 6 -2.7035 9.2051 6.9405 22 1 -2.0076 9.4688 7.7231 23 6 -3.8190 9.9998 6.7058 24 7 -4.0266 11.0726 7.4357 25 14 -5.0231 9.5433 5.3527 26 1 -6.0788 8.6583 5.9075 27 1 -5.6465 10.7761 4.8080 28 1 -4.3015 8.8322 4.2670 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 2.3495 1.7796 -2.1137 35 1 3.1177 4.1422 -1.2542 36 1 2.4964 3.5651 3.2823 37 1 2.9233 1.2889 6.4813 38 1 3.3145 0.6761 4.8564 39 1 3.9854 2.2300 5.4072 40 1 1.5153 3.2822 6.7565 41 1 2.4523 4.2533 5.5958 42 1 0.4389 4.4891 4.1678 43 1 -0.4980 3.5180 5.3285 44 1 0.0281 5.2052 6.9972 45 1 -1.0713 6.3699 4.5228 46 1 -2.0076 5.3991 5.6843 47 1 -3.1125 7.8484 5.4767 48 1 -4.8051 11.6276 7.2716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482826194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:09 Heat of formation + Delta-G solvation = -38.988897 kcal Electronic energy + Delta-G solvation = -28502.340522 eV Core-core repulsion = 24399.177375 eV Total energy + Delta-G solvation = -4103.163147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27564 -40.66152 -40.29073 -37.99353 -36.46109 -35.99528 -35.64515 -33.76154 -32.94539 -31.30309 -30.67518 -30.06479 -27.90049 -25.75415 -25.27409 -24.28832 -23.19072 -22.47667 -21.68056 -21.29272 -21.06079 -20.26000 -18.82098 -17.85391 -17.64569 -17.12625 -17.05319 -16.84488 -16.62308 -15.79604 -15.73449 -15.53122 -15.38180 -15.12280 -15.04969 -14.76844 -14.74997 -14.50177 -14.44263 -14.08761 -13.92224 -13.64945 -13.56299 -13.26352 -13.02678 -12.96763 -12.82962 -12.42680 -12.33980 -12.24610 -12.12081 -11.98256 -11.79712 -11.52361 -11.33498 -11.14431 -10.83557 -10.45983 -10.25934 -10.23316 -9.50986 -9.35302 -8.42032 -6.02870 0.33652 1.29904 1.34429 1.43730 1.44237 1.62904 1.93793 2.22177 2.28352 2.38144 2.68517 3.14192 3.29769 3.36452 3.74067 3.84467 3.93039 4.01875 4.04661 4.07765 4.18230 4.33796 4.37829 4.41523 4.46950 4.47692 4.48473 4.59200 4.67477 4.71755 4.78218 4.82199 4.88885 5.04362 5.14042 5.19408 5.24910 5.30836 5.46176 5.51908 5.67259 5.89261 5.93904 6.02566 6.32918 6.39584 6.58720 6.82868 6.86827 7.07525 7.38382 7.94468 8.75561 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.002134 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.382369 B =13115.242676 C =14320.397643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.414 5.414 4 C -0.009 4.009 5 C -0.050 4.050 6 N -0.468 5.468 7 C 0.103 3.897 8 C 0.605 3.395 9 O -0.563 6.563 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.083 0.917 13 C -0.157 4.157 14 C -0.117 4.117 15 C 0.063 3.937 16 N -0.684 5.684 17 C 0.061 3.939 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.234 1.234 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.224 0.776 35 H 0.198 0.802 36 H 0.415 0.585 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.346 0.654 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -27.984 -21.821 37.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.095 5.095 4 C -0.148 4.148 5 C -0.204 4.204 6 N -0.190 5.190 7 C -0.155 4.155 8 C 0.391 3.609 9 O -0.441 6.441 10 N -0.345 5.345 11 C 0.047 3.953 12 H 0.101 0.899 13 C -0.215 4.215 14 C -0.155 4.155 15 C -0.066 4.066 16 N -0.317 5.317 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.157 1.157 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.215 0.785 36 H 0.251 0.749 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.165 0.835 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.585 -27.544 -20.736 36.371 hybrid contribution -1.450 -0.175 -0.516 1.549 sum 10.135 -27.718 -21.252 36.369 Atomic orbital electron populations 1.22024 0.93397 1.04203 1.01893 1.22288 0.96398 0.77829 1.06228 1.45523 1.44552 1.13469 1.05968 1.23628 1.03862 0.93074 0.94261 1.22981 1.07789 0.99185 0.90401 1.70158 1.15507 1.18991 1.14379 1.22583 1.12759 0.89448 0.90686 1.16600 0.77390 0.84387 0.82573 1.90767 1.47857 1.21407 1.84098 1.45831 1.65435 1.17212 1.06002 1.21023 0.99106 0.96331 0.78858 0.89855 1.22118 0.97474 1.00088 1.01845 1.21799 0.97776 0.95499 1.00397 1.22006 0.97182 0.89403 0.97986 1.60074 1.35470 1.27236 1.08905 1.21618 0.93138 0.92885 0.99492 1.20941 0.81785 0.86908 0.86681 1.90539 1.47629 1.74569 1.36954 1.42045 1.23861 1.23955 1.33431 1.19019 1.09520 1.02170 1.15111 0.92556 1.26115 0.99384 0.95009 1.00870 1.69803 1.29939 1.16045 1.41581 0.85368 0.78536 0.79227 0.78423 1.18071 1.19905 1.15695 0.91442 0.88624 0.94355 0.85450 0.88884 0.75915 0.78522 0.74868 0.89833 0.93296 0.91728 0.88841 0.90188 0.91111 0.94534 0.83468 0.87360 0.90720 0.77520 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.23 71.98 0.74 -0.98 16 2 C 0.09 1.01 6.18 86.38 0.53 1.54 16 3 N -0.41 -6.41 2.76 -516.45 -1.42 -7.83 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.86 16 5 C -0.05 -0.78 11.85 83.88 0.99 0.21 16 6 N -0.47 -10.22 10.90 -189.53 -2.06 -12.29 16 7 C 0.10 2.19 7.79 136.28 1.06 3.25 16 8 C 0.61 13.53 7.78 86.66 0.67 14.20 16 9 O -0.56 -14.08 14.16 -4.04 -0.06 -14.14 16 10 N -0.69 -13.30 4.53 -445.82 -2.02 -15.32 16 11 C 0.15 2.58 2.57 44.99 0.12 2.69 16 12 H 0.08 1.58 7.58 -2.39 -0.02 1.56 16 13 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 14 C -0.12 -2.04 5.01 30.59 0.15 -1.89 16 15 C 0.06 1.36 5.57 86.30 0.48 1.84 16 16 N -0.68 -20.31 6.13 -517.91 -3.17 -23.49 16 17 C 0.06 1.95 6.17 85.56 0.53 2.47 16 18 C 0.45 20.74 7.82 87.66 0.69 21.43 16 19 O -0.61 -34.48 15.78 -3.07 -0.05 -34.53 16 20 N -0.59 -28.50 5.09 -306.98 -1.56 -30.06 16 21 C -0.33 -19.57 10.16 84.04 0.85 -18.71 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.93 -56.76 13.96 21.67 0.30 -56.46 16 25 Si 0.96 39.36 27.74 68.60 1.90 41.26 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.23 -8.12 6.52 99.48 0.65 -7.48 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.04 0.66 7.85 -2.39 -0.02 0.64 16 32 H 0.13 0.45 8.13 -2.39 -0.02 0.43 16 33 H 0.09 1.35 6.64 -2.38 -0.02 1.33 16 34 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.41 7.86 8.28 -92.71 -0.77 7.10 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.57 7.75 -2.39 -0.02 1.55 16 43 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.35 10.70 8.43 -89.69 -0.76 9.95 16 45 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.39 15.61 5.76 -92.71 -0.53 15.07 16 48 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.39 403.05 -0.33 -83.72 By element: Atomic # 1 Polarization: 45.40 SS G_CDS: -1.12 Total: 44.28 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 8.93 Total: 24.85 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -9.94 Total: -145.45 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.11 Total: -48.67 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.26 kcal Total: -83.39 -0.33 -83.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482826194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.733 kcal (2) G-P(sol) polarization free energy of solvation -83.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds