Wall clock time and date at job start Tue Mar 31 2020 19:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47458 * 2 1 4 4 C 1.52998 * 109.47098 * 239.99571 * 2 1 3 5 5 C 1.52994 * 109.47420 * 175.00385 * 4 2 1 6 6 N 1.46496 * 109.47546 * 180.02562 * 5 4 2 7 7 C 1.36940 * 120.00473 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99221 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00406 * 179.97438 * 7 6 5 10 10 N 1.31612 * 119.99927 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99818 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47113 * 89.99678 * 11 9 7 13 13 H 1.48500 * 109.46986 * 210.00132 * 11 9 7 14 14 H 1.48504 * 109.46982 * 330.00013 * 11 9 7 15 15 N 1.46507 * 109.46677 * 120.00106 * 2 1 3 16 16 C 1.34782 * 119.99543 * 274.99115 * 15 2 1 17 17 O 1.21595 * 119.99969 * 0.02562 * 16 15 2 18 18 C 1.47517 * 119.99792 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77412 * 179.97438 * 18 16 15 20 20 N 1.34807 * 106.84342 * 180.02562 * 19 18 16 21 21 C 1.46507 * 126.59524 * 180.26460 * 20 19 18 22 22 C 1.53171 * 109.54224 * 34.53069 * 21 20 19 23 23 C 1.53108 * 109.15650 * 183.24262 * 22 21 20 24 24 O 1.42904 * 109.48567 * 57.47451 * 23 22 21 25 25 C 1.42903 * 114.09972 * 298.88988 * 24 23 22 26 26 C 1.53094 * 109.41687 * 61.15673 * 25 24 23 27 27 N 1.40215 * 106.81120 * 359.97438 * 20 19 18 28 28 N 1.28755 * 108.36492 * 0.02562 * 27 20 19 29 29 H 1.09003 * 109.47170 * 300.00640 * 1 2 3 30 30 H 1.09005 * 109.46747 * 59.99645 * 1 2 3 31 31 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47215 * 295.00351 * 4 2 1 33 33 H 1.09002 * 109.47379 * 55.00202 * 4 2 1 34 34 H 1.09002 * 109.47120 * 300.00608 * 5 4 2 35 35 H 1.09002 * 109.46993 * 59.99581 * 5 4 2 36 36 H 0.97000 * 119.99979 * 359.97438 * 6 5 4 37 37 H 0.97005 * 120.00089 * 180.02562 * 10 9 7 38 38 H 0.96993 * 120.00294 * 95.00293 * 15 2 1 39 39 H 1.08000 * 126.57450 * 359.97438 * 19 18 16 40 40 H 1.09002 * 109.54125 * 154.70904 * 21 20 19 41 41 H 1.09000 * 109.52047 * 303.05678 * 22 21 20 42 42 H 1.09000 * 109.52587 * 63.24680 * 22 21 20 43 43 H 1.08999 * 109.40208 * 297.49379 * 23 22 21 44 44 H 1.08996 * 109.48097 * 177.50249 * 23 22 21 45 45 H 1.09005 * 109.47987 * 301.17723 * 25 24 23 46 46 H 1.08998 * 109.48303 * 181.14155 * 25 24 23 47 47 H 1.09003 * 109.52301 * 182.48940 * 26 25 24 48 48 H 1.09003 * 109.57048 * 62.33042 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3037 -2.5100 7 6 5.3951 -1.3396 -2.7801 8 1 6.0935 -0.8595 -2.1108 9 6 5.8578 -1.9940 -3.9134 10 7 7.1477 -2.0289 -4.1726 11 14 4.6496 -2.8251 -5.0707 12 1 4.2144 -1.8578 -6.1100 13 1 5.3065 -3.9877 -5.7205 14 1 3.4676 -3.2904 -4.3016 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8576 1.1615 2.4118 18 6 2.6392 -0.7134 3.5616 19 6 2.8149 -0.1497 4.7933 20 7 3.2767 -1.1215 5.6054 21 6 3.6069 -0.9885 7.0266 22 6 2.6456 0.0057 7.6851 23 6 3.0485 0.1995 9.1494 24 8 4.4025 0.6517 9.2154 25 6 5.3503 -0.2608 8.6577 26 6 5.0413 -0.4714 7.1731 27 7 3.3738 -2.2858 4.8302 28 7 2.9907 -2.0088 3.6325 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1370 34 1 3.8532 0.4367 -1.3573 35 1 3.9994 -1.0730 -0.4258 36 1 3.4258 -1.7352 -3.1110 37 1 7.4710 -2.4859 -4.9648 38 1 2.2490 -1.6318 1.1527 39 1 2.6218 0.8778 5.0642 40 1 3.5177 -1.9594 7.5140 41 1 2.6978 0.9620 7.1647 42 1 1.6284 -0.3828 7.6341 43 1 2.9557 -0.7487 9.6790 44 1 2.3951 0.9395 9.6114 45 1 5.2877 -1.2150 9.1809 46 1 6.3551 0.1478 8.7654 47 1 5.7359 -1.2008 6.7564 48 1 5.1436 0.4745 6.6411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482892565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:34 Heat of formation + Delta-G solvation = 20.119784 kcal Electronic energy + Delta-G solvation = -28756.682654 eV Core-core repulsion = 24656.082652 eV Total energy + Delta-G solvation = -4100.600002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54223 -40.06533 -39.49001 -36.58794 -35.93136 -34.46157 -32.26618 -32.03350 -31.81727 -31.26954 -30.34759 -28.23463 -26.15826 -24.64751 -24.23030 -23.54740 -22.76916 -21.46725 -21.00480 -20.69262 -20.40317 -18.59673 -17.54439 -17.01402 -16.83278 -16.42875 -16.16711 -15.94825 -15.52947 -15.14168 -14.91593 -14.59369 -14.46258 -14.29398 -14.16920 -13.96581 -13.57300 -13.28829 -13.20043 -12.63744 -12.56868 -12.51243 -12.29326 -12.19070 -12.01509 -11.87115 -11.65775 -11.47708 -11.20357 -11.12857 -10.85027 -10.70159 -10.61194 -10.47373 -10.41465 -10.10961 -10.10035 -9.55305 -9.53138 -9.00550 -8.83728 -7.18688 -5.72451 -3.07869 0.87339 1.56932 1.61059 3.11207 3.15596 3.25800 3.40563 3.43000 3.48069 3.58604 3.82222 3.96066 4.07366 4.15812 4.38932 4.40997 4.53860 4.62875 4.65511 4.73219 4.79627 4.85119 4.91301 4.96989 5.03202 5.18601 5.18796 5.27435 5.30707 5.38746 5.54433 5.56880 5.67384 5.68937 5.83951 5.97243 5.98810 6.04263 6.20021 6.25917 6.44672 6.51359 6.77839 6.81125 7.46459 7.77837 8.04387 8.18707 8.46505 9.25855 9.98061 10.18041 11.46119 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002170 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.203143 B =12900.801010 C =14100.077531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.703 5.703 16 C 0.606 3.394 17 O -0.543 6.543 18 C -0.098 4.098 19 C 0.093 3.907 20 N -0.358 5.358 21 C 0.151 3.849 22 C -0.171 4.171 23 C 0.067 3.933 24 O -0.378 6.378 25 C 0.066 3.934 26 C -0.170 4.170 27 N -0.063 5.063 28 N -0.199 5.199 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.410 0.590 39 H 0.202 0.798 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 4.044 29.874 32.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.194 4.194 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.353 5.353 16 C 0.390 3.610 17 O -0.420 6.420 18 C -0.237 4.237 19 C -0.064 4.064 20 N -0.143 5.143 21 C 0.049 3.951 22 C -0.210 4.210 23 C -0.011 4.011 24 O -0.296 6.296 25 C -0.012 4.012 26 C -0.209 4.209 27 N -0.043 5.043 28 N -0.073 5.073 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.218 0.782 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.519 3.604 30.000 32.707 hybrid contribution -0.856 -0.420 -1.033 1.406 sum -13.375 3.184 28.967 32.064 Atomic orbital electron populations 1.22171 0.95245 1.02124 1.02409 1.21012 0.93688 0.97785 0.83375 0.88938 1.22122 0.98126 1.00963 0.96578 1.20626 0.90168 0.96002 0.90237 1.42709 1.05314 1.66142 1.26089 1.19068 0.82271 1.29212 1.06656 0.89318 1.24687 0.95637 1.00733 0.98311 1.69706 1.11727 1.48375 1.28541 0.86510 0.80893 0.79423 0.81483 1.21106 1.21769 1.20329 1.45915 1.65740 1.14730 1.08952 1.16716 0.77171 0.85515 0.81610 1.90794 1.51601 1.14799 1.84818 1.21518 1.14543 0.91565 0.96054 1.23254 0.96282 0.96799 0.90016 1.50660 1.44507 1.08523 1.10594 1.21642 0.96078 1.02078 0.75262 1.22725 0.99797 1.00159 0.98334 1.22564 0.83838 1.01112 0.93543 1.88014 1.15688 1.45122 1.80774 1.22602 0.93777 0.94163 0.90611 1.22724 0.94975 1.03725 0.99462 1.82032 1.21766 1.04304 0.96175 1.74671 1.07910 1.13112 1.11593 0.92259 0.91418 0.92459 0.91267 0.90137 0.95523 0.95422 0.80713 0.93109 0.75433 0.78167 0.86676 0.89326 0.89162 0.92313 0.87507 0.92264 0.87531 0.89087 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.95 2.57 -67.93 -0.17 1.77 16 3 H 0.09 1.35 7.58 -51.94 -0.39 0.95 16 4 C -0.14 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.16 3.12 6.15 -4.05 -0.02 3.09 16 6 N -0.76 -18.53 5.41 -59.91 -0.32 -18.85 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.05 5.50 -17.44 -0.10 -0.04 16 10 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 11 Si 0.89 22.54 27.74 -169.99 -4.71 17.82 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 14 H -0.28 -6.59 6.52 56.52 0.37 -6.23 16 15 N -0.70 -9.57 4.53 -54.85 -0.25 -9.82 16 16 C 0.61 8.64 7.78 -12.48 -0.10 8.54 16 17 O -0.54 -8.72 16.53 5.28 0.09 -8.63 16 18 C -0.10 -1.26 6.99 -83.55 -0.58 -1.84 16 19 C 0.09 0.91 10.39 -16.84 -0.17 0.74 16 20 N -0.36 -3.25 3.55 -54.38 -0.19 -3.44 16 21 C 0.15 0.83 3.32 -67.74 -0.22 0.60 16 22 C -0.17 -0.64 5.14 -26.59 -0.14 -0.77 16 23 C 0.07 0.22 6.84 37.21 0.25 0.47 16 24 O -0.38 -2.12 10.77 -35.23 -0.38 -2.50 16 25 C 0.07 0.27 6.84 37.21 0.25 0.52 16 26 C -0.17 -0.88 5.75 -26.59 -0.15 -1.03 16 27 N -0.06 -0.79 13.78 60.35 0.83 0.04 16 28 N -0.20 -2.77 12.04 32.85 0.40 -2.38 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 38 H 0.41 5.47 8.29 -40.82 -0.34 5.13 16 39 H 0.20 1.41 7.26 -52.49 -0.38 1.03 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.35 7.08 -51.93 -0.37 -0.02 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -36.61 394.99 -6.53 -43.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.62 Total: 6.87 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.09 Total: 1.12 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 1.24 Total: -63.77 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.29 Total: -11.14 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.61 -6.53 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482892565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.258 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds