Wall clock time and date at job start Tue Mar 31 2020 19:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47458 * 2 1 4 4 C 1.52998 * 109.47098 * 239.99571 * 2 1 3 5 5 C 1.52994 * 109.47420 * 175.00385 * 4 2 1 6 6 N 1.46496 * 109.47546 * 180.02562 * 5 4 2 7 7 C 1.36940 * 120.00473 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99221 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00406 * 179.97438 * 7 6 5 10 10 N 1.31612 * 119.99927 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99818 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47113 * 89.99678 * 11 9 7 13 13 H 1.48500 * 109.46986 * 210.00132 * 11 9 7 14 14 H 1.48504 * 109.46982 * 330.00013 * 11 9 7 15 15 N 1.46507 * 109.46677 * 120.00106 * 2 1 3 16 16 C 1.34782 * 119.99543 * 274.99115 * 15 2 1 17 17 O 1.21595 * 119.99969 * 0.02562 * 16 15 2 18 18 C 1.47517 * 119.99792 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77412 * 179.97438 * 18 16 15 20 20 N 1.34807 * 106.84342 * 180.02562 * 19 18 16 21 21 C 1.46507 * 126.59524 * 180.26460 * 20 19 18 22 22 C 1.53171 * 109.54224 * 34.53069 * 21 20 19 23 23 C 1.53108 * 109.15650 * 183.24262 * 22 21 20 24 24 O 1.42904 * 109.48567 * 57.47451 * 23 22 21 25 25 C 1.42903 * 114.09972 * 298.88988 * 24 23 22 26 26 C 1.53094 * 109.41687 * 61.15673 * 25 24 23 27 27 N 1.40215 * 106.81120 * 359.97438 * 20 19 18 28 28 N 1.28755 * 108.36492 * 0.02562 * 27 20 19 29 29 H 1.09003 * 109.47170 * 300.00640 * 1 2 3 30 30 H 1.09005 * 109.46747 * 59.99645 * 1 2 3 31 31 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47215 * 295.00351 * 4 2 1 33 33 H 1.09002 * 109.47379 * 55.00202 * 4 2 1 34 34 H 1.09002 * 109.47120 * 300.00608 * 5 4 2 35 35 H 1.09002 * 109.46993 * 59.99581 * 5 4 2 36 36 H 0.97000 * 119.99979 * 359.97438 * 6 5 4 37 37 H 0.97005 * 120.00089 * 180.02562 * 10 9 7 38 38 H 0.96993 * 120.00294 * 95.00293 * 15 2 1 39 39 H 1.08000 * 126.57450 * 359.97438 * 19 18 16 40 40 H 1.09002 * 109.54125 * 154.70904 * 21 20 19 41 41 H 1.09000 * 109.52047 * 303.05678 * 22 21 20 42 42 H 1.09000 * 109.52587 * 63.24680 * 22 21 20 43 43 H 1.08999 * 109.40208 * 297.49379 * 23 22 21 44 44 H 1.08996 * 109.48097 * 177.50249 * 23 22 21 45 45 H 1.09005 * 109.47987 * 301.17723 * 25 24 23 46 46 H 1.08998 * 109.48303 * 181.14155 * 25 24 23 47 47 H 1.09003 * 109.52301 * 182.48940 * 26 25 24 48 48 H 1.09003 * 109.57048 * 62.33042 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3037 -2.5100 7 6 5.3951 -1.3396 -2.7801 8 1 6.0935 -0.8595 -2.1108 9 6 5.8578 -1.9940 -3.9134 10 7 7.1477 -2.0289 -4.1726 11 14 4.6496 -2.8251 -5.0707 12 1 4.2144 -1.8578 -6.1100 13 1 5.3065 -3.9877 -5.7205 14 1 3.4676 -3.2904 -4.3016 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8576 1.1615 2.4118 18 6 2.6392 -0.7134 3.5616 19 6 2.8149 -0.1497 4.7933 20 7 3.2767 -1.1215 5.6054 21 6 3.6069 -0.9885 7.0266 22 6 2.6456 0.0057 7.6851 23 6 3.0485 0.1995 9.1494 24 8 4.4025 0.6517 9.2154 25 6 5.3503 -0.2608 8.6577 26 6 5.0413 -0.4714 7.1731 27 7 3.3738 -2.2858 4.8302 28 7 2.9907 -2.0088 3.6325 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1370 34 1 3.8532 0.4367 -1.3573 35 1 3.9994 -1.0730 -0.4258 36 1 3.4258 -1.7352 -3.1110 37 1 7.4710 -2.4859 -4.9648 38 1 2.2490 -1.6318 1.1527 39 1 2.6218 0.8778 5.0642 40 1 3.5177 -1.9594 7.5140 41 1 2.6978 0.9620 7.1647 42 1 1.6284 -0.3828 7.6341 43 1 2.9557 -0.7487 9.6790 44 1 2.3951 0.9395 9.6114 45 1 5.2877 -1.2150 9.1809 46 1 6.3551 0.1478 8.7654 47 1 5.7359 -1.2008 6.7564 48 1 5.1436 0.4745 6.6411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482892565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:33 Heat of formation + Delta-G solvation = -8.069768 kcal Electronic energy + Delta-G solvation = -28757.905045 eV Core-core repulsion = 24656.082652 eV Total energy + Delta-G solvation = -4101.822393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39421 -40.76252 -40.28845 -37.94148 -36.52317 -36.20244 -33.80605 -32.82786 -32.65211 -32.22815 -31.42450 -29.71416 -26.72385 -25.80204 -25.12148 -24.58784 -23.45895 -23.14415 -22.16461 -21.46805 -21.21228 -19.81165 -19.26704 -17.69320 -17.47006 -17.30583 -16.89727 -16.72514 -16.49999 -16.02491 -15.91855 -15.81132 -15.58768 -15.44700 -15.07913 -14.92860 -14.86059 -14.70707 -14.29944 -13.87176 -13.51238 -13.40857 -13.32108 -12.97634 -12.93870 -12.78237 -12.64158 -12.44964 -12.39798 -12.27982 -12.18802 -12.00512 -11.84369 -11.74223 -11.51897 -11.28970 -11.23554 -10.98810 -10.75515 -10.47154 -10.06499 -9.32148 -8.04207 -5.38957 0.05611 0.56068 0.92405 1.37966 1.43153 1.50470 2.09798 2.21340 2.48365 2.86987 3.08082 3.14068 3.26712 3.41511 3.44085 3.62081 3.73414 3.78369 3.84763 4.02055 4.08136 4.10079 4.13263 4.20704 4.26666 4.44276 4.51550 4.54972 4.58406 4.61860 4.67777 4.75738 4.75764 4.86988 4.87393 4.94317 5.00845 5.03299 5.18860 5.25059 5.34359 5.36084 5.52308 5.72662 6.16466 6.19415 6.39647 6.83646 7.06279 7.10556 7.80904 8.02840 9.17517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002170 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.203143 B =12900.801010 C =14100.077531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.155 3.845 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.048 0.952 9 C -0.068 4.068 10 N -0.985 5.985 11 Si 0.964 3.036 12 H -0.275 1.275 13 H -0.295 1.295 14 H -0.246 1.246 15 N -0.703 5.703 16 C 0.605 3.395 17 O -0.566 6.566 18 C -0.122 4.122 19 C 0.109 3.891 20 N -0.343 5.343 21 C 0.143 3.857 22 C -0.165 4.165 23 C 0.065 3.935 24 O -0.398 6.398 25 C 0.068 3.932 26 C -0.166 4.166 27 N -0.086 5.086 28 N -0.224 5.224 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.015 0.985 35 H 0.018 0.982 36 H 0.369 0.631 37 H 0.259 0.741 38 H 0.411 0.589 39 H 0.229 0.771 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 3.724 30.802 34.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.066 0.934 9 C -0.259 4.259 10 N -0.636 5.636 11 Si 0.790 3.210 12 H -0.201 1.201 13 H -0.222 1.222 14 H -0.171 1.171 15 N -0.353 5.353 16 C 0.390 3.610 17 O -0.445 6.445 18 C -0.262 4.262 19 C -0.049 4.049 20 N -0.127 5.127 21 C 0.043 3.957 22 C -0.204 4.204 23 C -0.012 4.012 24 O -0.317 6.317 25 C -0.009 4.009 26 C -0.205 4.205 27 N -0.065 5.065 28 N -0.097 5.097 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.203 0.797 37 H 0.068 0.932 38 H 0.247 0.753 39 H 0.245 0.755 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.242 3.275 30.978 34.680 hybrid contribution 0.088 -0.237 -1.159 1.186 sum -15.154 3.037 29.819 33.587 Atomic orbital electron populations 1.22088 0.92970 1.03014 1.02941 1.20979 0.95303 0.96658 0.82576 0.90372 1.21996 0.93932 1.02252 0.98051 1.20750 0.93833 0.94515 0.88054 1.42667 1.03512 1.66551 1.27569 1.19012 0.84019 1.28256 1.05874 0.93400 1.25636 0.97797 1.01990 1.00500 1.69907 1.14372 1.49847 1.29442 0.85285 0.78961 0.77897 0.78881 1.20080 1.22197 1.17066 1.45963 1.65576 1.14755 1.09028 1.16888 0.76742 0.85288 0.82071 1.90769 1.52819 1.15631 1.85272 1.21524 1.16206 0.91745 0.96678 1.23634 0.94548 0.97710 0.89037 1.50919 1.42871 1.07392 1.11533 1.22059 0.96819 1.03486 0.73344 1.22728 0.99686 0.99445 0.98511 1.22727 0.82999 1.02297 0.93167 1.87992 1.16799 1.46019 1.80844 1.22652 0.93869 0.94786 0.89589 1.22688 0.94556 1.02851 1.00382 1.81938 1.22528 1.05834 0.96237 1.74635 1.08798 1.13843 1.12469 0.92853 0.89760 0.91360 0.89959 0.88507 0.96666 0.96441 0.79724 0.93246 0.75310 0.75505 0.85452 0.89402 0.88201 0.90867 0.86233 0.90730 0.87050 0.89892 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.48 71.98 0.68 -2.36 16 2 C 0.15 3.79 2.57 44.99 0.12 3.90 16 3 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 4 C -0.12 -3.45 4.87 30.59 0.15 -3.30 16 5 C 0.15 6.11 6.15 86.38 0.53 6.64 16 6 N -0.76 -36.48 5.41 -343.47 -1.86 -38.34 16 7 C -0.24 -14.38 10.47 84.03 0.88 -13.50 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 9 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 10 N -0.99 -64.96 13.97 21.65 0.30 -64.66 16 11 Si 0.96 46.02 27.74 68.60 1.90 47.92 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.25 -10.43 6.52 99.48 0.65 -9.78 16 15 N -0.70 -18.88 4.53 -445.71 -2.02 -20.90 16 16 C 0.61 17.23 7.78 86.69 0.67 17.90 16 17 O -0.57 -18.07 16.53 -4.02 -0.07 -18.14 16 18 C -0.12 -3.13 6.99 40.81 0.29 -2.84 16 19 C 0.11 2.04 10.39 83.85 0.87 2.91 16 20 N -0.34 -5.93 3.55 -325.97 -1.16 -7.09 16 21 C 0.14 1.36 3.32 45.11 0.15 1.51 16 22 C -0.16 -0.88 5.14 30.69 0.16 -0.72 16 23 C 0.07 0.27 6.84 72.02 0.49 0.77 16 24 O -0.40 -3.78 10.77 -148.98 -1.60 -5.39 16 25 C 0.07 0.46 6.84 72.01 0.49 0.95 16 26 C -0.17 -1.57 5.75 30.69 0.18 -1.39 16 27 N -0.09 -2.15 13.78 37.02 0.51 -1.64 16 28 N -0.22 -6.31 12.04 -50.00 -0.60 -6.91 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.02 0.73 7.75 -2.39 -0.02 0.71 16 36 H 0.37 16.44 5.53 -92.71 -0.51 15.92 16 37 H 0.26 16.14 8.31 -92.70 -0.77 15.36 16 38 H 0.41 10.86 8.29 -92.71 -0.77 10.10 16 39 H 0.23 2.84 7.26 -2.91 -0.02 2.81 16 40 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.51 7.08 -2.39 -0.02 0.49 16 42 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 46 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -81.01 394.99 1.18 -79.84 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.36 Total: 28.52 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.13 Total: 6.78 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -4.82 Total: -139.54 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.67 Total: -23.53 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -81.01 1.18 -79.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482892565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.766 kcal (2) G-P(sol) polarization free energy of solvation -81.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds