Wall clock time and date at job start Tue Mar 31 2020 19:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99493 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47680 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46990 * 120.00387 * 11 9 7 14 14 H 1.48500 * 109.47072 * 239.99786 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21591 * 120.00299 * 359.97438 * 16 15 2 18 18 C 1.47527 * 119.99746 * 180.02562 * 16 15 2 19 19 C 1.36593 * 125.77299 * 179.71649 * 18 16 15 20 20 N 1.34810 * 106.84167 * 179.89751 * 19 18 16 21 21 C 1.46498 * 126.59600 * 180.10751 * 20 19 18 22 22 C 1.53180 * 109.54395 * 35.09742 * 21 20 19 23 23 C 1.53101 * 109.15740 * 183.24223 * 22 21 20 24 24 O 1.42898 * 109.49248 * 57.47413 * 23 22 21 25 25 C 1.42906 * 114.09518 * 298.88961 * 24 23 22 26 26 C 1.53094 * 109.41375 * 61.15724 * 25 24 23 27 27 N 1.40206 * 106.81147 * 0.35741 * 20 19 18 28 28 N 1.28761 * 108.36624 * 359.77381 * 27 20 19 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 35 35 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 36 36 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 37 37 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 38 38 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 39 39 H 1.08004 * 126.57716 * 0.03758 * 19 18 16 40 40 H 1.09000 * 109.54808 * 155.27327 * 21 20 19 41 41 H 1.09005 * 109.52302 * 303.05765 * 22 21 20 42 42 H 1.09002 * 109.52276 * 63.24784 * 22 21 20 43 43 H 1.09005 * 109.40513 * 297.49037 * 23 22 21 44 44 H 1.09008 * 109.48416 * 177.50592 * 23 22 21 45 45 H 1.08994 * 109.48362 * 301.17178 * 25 24 23 46 46 H 1.09005 * 109.48043 * 181.13526 * 25 24 23 47 47 H 1.09004 * 109.52182 * 182.48545 * 26 25 24 48 48 H 1.08996 * 109.57610 * 62.32722 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 5.0066 -2.5802 4.7285 11 14 7.6886 -2.0445 4.2809 12 1 8.4270 -1.3166 3.2179 13 1 7.9475 -1.3996 5.5933 14 1 8.1465 -3.4565 4.3244 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8575 1.1614 -2.4118 18 6 2.6384 -0.7138 -3.5617 19 6 2.8084 -0.1516 -4.7949 20 7 3.2731 -1.1227 -5.6063 21 6 3.6063 -0.9890 -7.0266 22 6 4.1941 0.4014 -7.2863 23 6 4.4638 0.5610 -8.7849 24 8 3.2507 0.3566 -9.5121 25 6 2.6822 -0.9438 -9.3447 26 6 2.3389 -1.1630 -7.8690 27 7 3.3706 -2.2868 -4.8309 28 7 2.9890 -2.0094 -3.6328 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4261 35 1 3.8531 0.4370 1.3574 36 1 3.4258 -1.7358 3.1107 37 1 5.3298 -3.0372 5.5207 38 1 2.2491 -1.6318 -1.1525 39 1 2.6107 0.8747 -5.0671 40 1 4.3354 -1.7506 -7.3033 41 1 3.4850 1.1631 -6.9620 42 1 5.1269 0.5117 -6.7332 43 1 5.2046 -0.1739 -9.0999 44 1 4.8408 1.5647 -8.9817 45 1 3.3997 -1.6984 -9.6670 46 1 1.7757 -1.0242 -9.9446 47 1 1.9460 -2.1705 -7.7321 48 1 1.5907 -0.4347 -7.5560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482892578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:35 Heat of formation + Delta-G solvation = -10.810330 kcal Electronic energy + Delta-G solvation = -28696.208818 eV Core-core repulsion = 24594.267586 eV Total energy + Delta-G solvation = -4101.941233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39183 -40.75743 -40.28399 -37.85968 -36.51824 -36.10730 -33.67025 -32.73451 -32.57156 -32.21875 -31.33449 -29.40822 -26.71887 -25.93962 -25.17360 -24.60405 -23.45403 -23.22806 -22.09356 -21.45918 -21.20776 -19.52465 -19.04747 -17.67836 -17.43464 -17.31689 -16.94925 -16.69496 -16.53062 -15.93159 -15.89614 -15.76538 -15.47826 -15.40210 -15.17619 -14.92069 -14.83584 -14.77303 -14.25411 -13.60600 -13.49983 -13.40433 -13.10544 -12.91744 -12.89851 -12.77843 -12.62435 -12.45332 -12.37648 -12.27685 -12.23685 -12.00438 -11.93185 -11.64122 -11.51372 -11.28348 -11.22905 -10.96629 -10.75261 -10.46775 -10.06008 -9.01854 -7.97240 -5.26199 0.06122 0.56432 0.92730 1.45475 1.46564 1.56760 2.10432 2.21154 2.54072 2.87183 3.08052 3.14248 3.36084 3.42314 3.56565 3.68512 3.73800 3.78929 3.85469 4.06603 4.08541 4.14373 4.16735 4.20860 4.38417 4.45202 4.52750 4.56839 4.59067 4.64831 4.68380 4.75947 4.77492 4.87213 4.87753 4.94471 5.00485 5.03512 5.21443 5.27828 5.34380 5.36492 5.46900 5.52828 6.16448 6.25532 6.40383 6.84092 7.10684 7.31781 8.06925 8.31600 9.26294 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002140 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.183788 B =13078.498400 C =14365.370099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.247 4.247 8 H 0.070 0.930 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.269 1.269 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.702 5.702 16 C 0.605 3.395 17 O -0.566 6.566 18 C -0.121 4.121 19 C 0.109 3.891 20 N -0.343 5.343 21 C 0.142 3.858 22 C -0.167 4.167 23 C 0.066 3.934 24 O -0.397 6.397 25 C 0.067 3.933 26 C -0.162 4.162 27 N -0.086 5.086 28 N -0.225 5.225 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.016 0.984 35 H 0.012 0.988 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.410 0.590 39 H 0.229 0.771 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 5.853 -32.694 34.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.158 4.158 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.088 0.912 9 C -0.268 4.268 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.352 5.352 16 C 0.390 3.610 17 O -0.445 6.445 18 C -0.261 4.261 19 C -0.049 4.049 20 N -0.127 5.127 21 C 0.042 3.958 22 C -0.206 4.206 23 C -0.011 4.011 24 O -0.316 6.316 25 C -0.010 4.010 26 C -0.201 4.201 27 N -0.065 5.065 28 N -0.098 5.098 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.208 0.792 37 H 0.061 0.939 38 H 0.246 0.754 39 H 0.245 0.755 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.105 0.895 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.405 5.367 -32.897 34.144 hybrid contribution 0.784 -0.090 1.071 1.330 sum -6.621 5.277 -31.826 32.933 Atomic orbital electron populations 1.22090 0.93196 1.02902 1.02887 1.20950 0.95152 0.96599 0.82568 0.90258 1.21917 0.94555 1.01682 0.97638 1.20756 0.93589 0.94319 0.88609 1.42557 1.04518 1.65292 1.26436 1.19626 0.85285 1.27676 1.05316 0.91218 1.25580 1.02155 1.01200 0.97830 1.69810 1.34512 1.41883 1.15536 0.85070 0.80004 0.77078 0.77585 1.19390 1.21682 1.21758 1.45959 1.65503 1.14731 1.09023 1.16895 0.76758 0.85303 0.82022 1.90766 1.52846 1.15638 1.85259 1.21505 1.16220 0.91737 0.96616 1.23627 0.94443 0.97781 0.89013 1.50915 1.42843 1.07484 1.11446 1.22061 0.99557 1.01614 0.72583 1.22734 1.03434 0.94158 1.00255 1.22694 0.86506 1.04383 0.87502 1.87989 1.40515 1.33554 1.69505 1.22684 1.00262 0.84908 0.93193 1.22670 0.96230 1.04369 0.96817 1.81939 1.22604 1.05812 0.96156 1.74648 1.08915 1.13787 1.12447 0.91571 0.89967 0.92655 0.89443 0.90733 0.96622 0.97023 0.79187 0.93875 0.75373 0.75467 0.85720 0.89223 0.88769 0.91038 0.86385 0.90944 0.86701 0.89510 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.77 16 2 C 0.15 4.19 2.57 44.99 0.12 4.31 16 3 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 4 C -0.12 -3.79 4.87 30.59 0.15 -3.64 16 5 C 0.15 6.43 6.15 86.38 0.53 6.96 16 6 N -0.75 -39.29 5.60 -343.44 -1.92 -41.21 16 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 10 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 11 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 14 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 15 N -0.70 -19.85 4.53 -445.71 -2.02 -21.86 16 16 C 0.61 17.61 7.78 86.69 0.67 18.29 16 17 O -0.57 -18.36 16.53 -4.00 -0.07 -18.43 16 18 C -0.12 -3.13 6.99 40.82 0.29 -2.85 16 19 C 0.11 2.04 10.40 83.85 0.87 2.91 16 20 N -0.34 -5.88 3.55 -325.97 -1.16 -7.04 16 21 C 0.14 1.32 3.31 45.11 0.15 1.47 16 22 C -0.17 -1.03 5.15 30.69 0.16 -0.87 16 23 C 0.07 0.31 6.84 72.02 0.49 0.80 16 24 O -0.40 -3.50 10.77 -148.98 -1.60 -5.11 16 25 C 0.07 0.35 6.84 72.01 0.49 0.84 16 26 C -0.16 -1.21 5.75 30.69 0.18 -1.03 16 27 N -0.09 -2.14 13.78 37.02 0.51 -1.63 16 28 N -0.22 -6.38 12.04 -49.99 -0.60 -6.98 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.38 20.65 7.67 -92.71 -0.71 19.94 16 37 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.41 11.56 8.29 -92.71 -0.77 10.79 16 39 H 0.23 2.81 7.27 -2.91 -0.02 2.79 16 40 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.55 7.09 -2.38 -0.02 0.53 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -76.24 398.13 1.04 -75.20 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.50 Total: 30.64 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.09 Total: 6.89 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -4.91 Total: -138.61 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -1.67 Total: -23.54 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.24 1.04 -75.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482892578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.390 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds