Wall clock time and date at job start Tue Mar 31 2020 20:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47312 * 2 1 4 4 C 1.46507 * 120.00056 * 96.49214 * 3 2 1 5 5 C 1.53001 * 109.47226 * 270.00768 * 4 3 2 6 6 N 1.46898 * 109.46983 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99935 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47235 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00028 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00097 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99963 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99627 * 179.97438 * 11 10 8 14 14 N 1.31416 * 120.00464 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99590 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47222 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47119 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.47112 * 240.00090 * 15 13 11 19 19 C 1.34779 * 120.00299 * 276.49727 * 3 2 1 20 20 O 1.21571 * 119.99872 * 175.57697 * 19 3 2 21 21 C 1.47701 * 119.99854 * 355.58027 * 19 3 2 22 22 C 1.41503 * 126.52041 * 185.80895 * 21 19 3 23 23 C 1.35361 * 105.50470 * 179.83982 * 22 21 19 24 24 N 1.35027 * 107.23090 * 0.41163 * 23 22 21 25 25 C 1.46499 * 124.88572 * 179.72401 * 24 23 22 26 26 C 1.53006 * 109.46769 * 124.97833 * 25 24 23 27 27 N 1.28470 * 110.22809 * 359.72694 * 24 23 22 28 28 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46780 * 299.99686 * 1 2 3 30 30 H 1.09002 * 109.47123 * 59.99059 * 1 2 3 31 31 H 1.08995 * 109.46989 * 240.00863 * 2 1 3 32 32 H 1.08999 * 109.47215 * 120.00178 * 2 1 3 33 33 H 1.09000 * 109.46541 * 30.00319 * 4 3 2 34 34 H 1.08997 * 109.47348 * 150.00454 * 4 3 2 35 35 H 1.09003 * 109.46758 * 299.99746 * 5 4 3 36 36 H 1.08992 * 109.47529 * 59.99258 * 5 4 3 37 37 H 1.00904 * 111.00220 * 56.04487 * 6 5 4 38 38 H 1.09008 * 109.47221 * 300.00004 * 7 6 5 39 39 H 1.09000 * 109.47531 * 59.99990 * 7 6 5 40 40 H 0.96999 * 119.99777 * 359.97438 * 10 8 7 41 41 H 0.96993 * 119.99875 * 179.97438 * 14 13 11 42 42 H 1.08005 * 127.24234 * 359.97438 * 22 21 19 43 43 H 1.08005 * 126.38374 * 180.14055 * 23 22 21 44 44 H 1.08995 * 109.47255 * 244.97290 * 25 24 23 45 45 H 1.08999 * 109.47373 * 4.97869 * 25 24 23 46 46 H 1.08991 * 109.47245 * 60.00211 * 26 25 24 47 47 H 1.09004 * 109.47103 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.46796 * 299.99684 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3978 2.0240 1.2606 5 6 1.1786 2.7254 1.8627 6 7 1.5590 3.3694 3.1270 7 6 0.4108 4.0550 3.7349 8 6 0.8386 4.7026 5.0266 9 8 1.9870 4.6025 5.4039 10 7 -0.0550 5.3923 5.7631 11 6 0.3342 5.9810 6.9385 12 1 1.3569 5.8925 7.2740 13 6 -0.5870 6.6924 7.6974 14 7 -1.8314 6.8005 7.2888 15 14 -0.0566 7.4952 9.2986 16 1 1.3853 7.2281 9.5324 17 1 -0.2810 8.9608 9.2156 18 1 -0.8525 6.9354 10.4204 19 6 2.1185 2.0606 -1.1597 20 8 2.4467 3.2312 -1.1520 21 6 1.8295 1.3830 -2.4399 22 6 2.0001 1.9240 -3.7363 23 6 1.6131 0.9472 -4.5897 24 7 1.2264 -0.1080 -3.8412 25 6 0.7281 -1.3773 -4.3764 26 6 1.5657 -2.5299 -3.8187 27 7 1.3584 0.1615 -2.5920 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7638 1.2697 1.9572 34 1 3.1827 2.7567 1.0731 35 1 0.8126 3.4797 1.1660 36 1 0.3937 1.9928 2.0502 37 1 2.3295 4.0065 2.9909 38 1 0.0401 4.8189 3.0512 39 1 -0.3799 3.3319 3.9350 40 1 -0.9734 5.4720 5.4615 41 1 -2.4745 7.2968 7.8188 42 1 2.3647 2.9082 -3.9911 43 1 1.6097 1.0031 -5.6683 44 1 -0.3135 -1.5108 -4.0846 45 1 0.8024 -1.3673 -5.4639 46 1 1.4914 -2.5400 -2.7313 47 1 1.1952 -3.4744 -4.2173 48 1 2.6074 -2.3964 -4.1105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482955680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:36 Heat of formation + Delta-G solvation = 22.757815 kcal Electronic energy + Delta-G solvation = -28625.017510 eV Core-core repulsion = 24524.531902 eV Total energy + Delta-G solvation = -4100.485609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01797 -39.81300 -38.20363 -36.49520 -35.25636 -34.91092 -33.76966 -31.51160 -31.13602 -30.83157 -30.40472 -28.95698 -26.28442 -25.08354 -23.83138 -23.57109 -22.41879 -21.78383 -21.43240 -19.55023 -19.09061 -17.83199 -17.70966 -17.12891 -16.49592 -16.19211 -16.04809 -15.44273 -15.20406 -14.84557 -14.47939 -14.31868 -14.22005 -14.01561 -13.86177 -13.60524 -13.42726 -13.26242 -13.20852 -12.92968 -12.77396 -12.72048 -12.14666 -12.05133 -11.99267 -11.86437 -11.52499 -11.44989 -11.38254 -11.05358 -10.92547 -10.62707 -10.29864 -10.17924 -10.15167 -9.53254 -9.46416 -9.38904 -8.81587 -8.37196 -7.98810 -7.89710 -6.36250 -3.76834 1.32191 1.84053 2.02698 2.84098 3.20666 3.25344 3.30728 3.38558 3.84359 3.97827 4.18534 4.25975 4.29346 4.40046 4.51844 4.53619 4.73631 4.90723 4.98987 5.10482 5.13693 5.14971 5.25455 5.30123 5.32338 5.35904 5.38311 5.45972 5.49159 5.57570 5.66216 5.76386 5.86181 5.93819 6.01545 6.06658 6.10608 6.19517 6.32383 6.40722 6.52253 7.23918 7.27947 7.56981 7.60842 7.74406 8.08053 8.12599 8.67501 9.23677 9.60635 10.12304 10.81728 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.001737 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.892382 B =16115.904460 C =16312.499940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.598 5.598 4 C 0.119 3.881 5 C 0.045 3.955 6 N -0.667 5.667 7 C 0.052 3.948 8 C 0.443 3.557 9 O -0.582 6.582 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.600 3.400 20 O -0.530 6.530 21 C -0.014 4.014 22 C -0.179 4.179 23 C -0.020 4.020 24 N -0.286 5.286 25 C 0.116 3.884 26 C -0.168 4.168 27 N -0.251 5.251 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.270 0.730 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -20.217 -28.359 34.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.331 5.331 4 C -0.004 4.004 5 C -0.085 4.085 6 N -0.300 5.300 7 C -0.081 4.081 8 C 0.228 3.772 9 O -0.466 6.466 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.122 0.878 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.386 3.614 20 O -0.404 6.404 21 C -0.174 4.174 22 C -0.207 4.207 23 C -0.162 4.162 24 N -0.075 5.075 25 C -0.003 4.003 26 C -0.226 4.226 27 N -0.088 5.088 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.179 0.821 43 H 0.197 0.803 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.546 -21.183 -27.080 34.476 hybrid contribution -0.519 1.867 -0.533 2.010 sum 2.027 -19.316 -27.614 33.760 Atomic orbital electron populations 1.22115 0.95794 1.01879 1.02072 1.21910 0.94878 0.81636 1.03823 1.47811 1.64536 1.14551 1.06194 1.21469 0.97200 0.98272 0.83413 1.22318 0.97669 0.98203 0.90337 1.60045 1.08722 1.37371 1.23816 1.21653 0.93728 0.97210 0.95461 1.19812 0.86770 0.83941 0.86665 1.90518 1.19272 1.64184 1.72656 1.41870 1.11390 1.46281 1.20666 1.19766 0.97704 1.28077 0.97170 0.87843 1.25267 0.94991 0.97895 0.99910 1.69626 1.02815 1.42386 1.39601 0.85795 0.78940 0.78528 0.81040 1.19211 1.20810 1.20787 1.17006 0.77211 0.85339 0.81798 1.90816 1.47902 1.15166 1.86565 1.21938 1.07978 0.92257 0.95192 1.21784 1.07067 1.01275 0.90545 1.22867 1.05742 0.88424 0.99193 1.45802 1.45245 1.13038 1.03396 1.22004 0.99555 0.79557 0.99231 1.22083 1.00278 0.96965 1.03243 1.73670 1.18563 1.16648 0.99869 0.91903 0.92563 0.92582 0.88080 0.90538 0.89199 0.89754 0.95028 0.91017 0.83023 0.93831 0.89673 0.77466 0.91982 0.82113 0.80271 0.88822 0.87958 0.90682 0.90201 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.75 37.16 0.36 -1.10 16 2 C 0.10 0.94 5.75 -4.04 -0.02 0.92 16 3 N -0.60 -7.21 2.49 -174.85 -0.44 -7.65 16 4 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 5 C 0.05 0.66 6.01 -3.82 -0.02 0.64 16 6 N -0.67 -11.77 6.13 -115.06 -0.70 -12.48 16 7 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 8 C 0.44 10.97 7.82 -10.99 -0.09 10.89 16 9 O -0.58 -16.43 15.78 5.55 0.09 -16.34 16 10 N -0.57 -14.91 5.29 -10.97 -0.06 -14.97 16 11 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 12 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -25.21 13.05 55.50 0.72 -24.48 16 15 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.60 8.34 7.62 -12.39 -0.09 8.24 16 20 O -0.53 -9.10 16.55 5.30 0.09 -9.01 16 21 C -0.01 -0.16 6.66 -82.77 -0.55 -0.71 16 22 C -0.18 -1.73 10.81 -39.36 -0.43 -2.15 16 23 C -0.02 -0.13 11.40 -17.17 -0.20 -0.32 16 24 N -0.29 -1.91 3.41 -61.33 -0.21 -2.12 16 25 C 0.12 0.32 7.12 -4.04 -0.03 0.29 16 26 C -0.17 -0.44 10.02 37.16 0.37 -0.07 16 27 N -0.25 -2.32 7.02 33.42 0.23 -2.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 30 H 0.06 0.58 7.11 -51.93 -0.37 0.21 16 31 H 0.10 0.92 5.33 -51.93 -0.28 0.64 16 32 H 0.08 0.63 7.82 -51.93 -0.41 0.22 16 33 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 34 H 0.08 1.19 7.49 -51.93 -0.39 0.80 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.98 6.73 -51.93 -0.35 0.63 16 37 H 0.35 6.45 8.43 -39.29 -0.33 6.12 16 38 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.39 9.90 7.90 -40.82 -0.32 9.57 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 44 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.10 0.01 8.04 -51.93 -0.42 -0.41 16 46 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 47 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 48 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -36.02 400.65 -7.60 -43.62 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.35 Total: 12.06 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -0.99 Total: 10.87 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.45 Total: -63.78 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.18 Total: -25.35 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.02 -7.60 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482955680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.374 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds