Wall clock time and date at job start Tue Mar 31 2020 20:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47312 * 2 1 4 4 C 1.46507 * 120.00056 * 96.49214 * 3 2 1 5 5 C 1.53001 * 109.47226 * 270.00768 * 4 3 2 6 6 N 1.46898 * 109.46983 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99935 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47235 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00028 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00097 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99963 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99627 * 179.97438 * 11 10 8 14 14 N 1.31416 * 120.00464 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99590 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47222 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47119 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.47112 * 240.00090 * 15 13 11 19 19 C 1.34779 * 120.00299 * 276.49727 * 3 2 1 20 20 O 1.21571 * 119.99872 * 175.57697 * 19 3 2 21 21 C 1.47701 * 119.99854 * 355.58027 * 19 3 2 22 22 C 1.41503 * 126.52041 * 185.80895 * 21 19 3 23 23 C 1.35361 * 105.50470 * 179.83982 * 22 21 19 24 24 N 1.35027 * 107.23090 * 0.41163 * 23 22 21 25 25 C 1.46499 * 124.88572 * 179.72401 * 24 23 22 26 26 C 1.53006 * 109.46769 * 124.97833 * 25 24 23 27 27 N 1.28470 * 110.22809 * 359.72694 * 24 23 22 28 28 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46780 * 299.99686 * 1 2 3 30 30 H 1.09002 * 109.47123 * 59.99059 * 1 2 3 31 31 H 1.08995 * 109.46989 * 240.00863 * 2 1 3 32 32 H 1.08999 * 109.47215 * 120.00178 * 2 1 3 33 33 H 1.09000 * 109.46541 * 30.00319 * 4 3 2 34 34 H 1.08997 * 109.47348 * 150.00454 * 4 3 2 35 35 H 1.09003 * 109.46758 * 299.99746 * 5 4 3 36 36 H 1.08992 * 109.47529 * 59.99258 * 5 4 3 37 37 H 1.00904 * 111.00220 * 56.04487 * 6 5 4 38 38 H 1.09008 * 109.47221 * 300.00004 * 7 6 5 39 39 H 1.09000 * 109.47531 * 59.99990 * 7 6 5 40 40 H 0.96999 * 119.99777 * 359.97438 * 10 8 7 41 41 H 0.96993 * 119.99875 * 179.97438 * 14 13 11 42 42 H 1.08005 * 127.24234 * 359.97438 * 22 21 19 43 43 H 1.08005 * 126.38374 * 180.14055 * 23 22 21 44 44 H 1.08995 * 109.47255 * 244.97290 * 25 24 23 45 45 H 1.08999 * 109.47373 * 4.97869 * 25 24 23 46 46 H 1.08991 * 109.47245 * 60.00211 * 26 25 24 47 47 H 1.09004 * 109.47103 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.46796 * 299.99684 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3978 2.0240 1.2606 5 6 1.1786 2.7254 1.8627 6 7 1.5590 3.3694 3.1270 7 6 0.4108 4.0550 3.7349 8 6 0.8386 4.7026 5.0266 9 8 1.9870 4.6025 5.4039 10 7 -0.0550 5.3923 5.7631 11 6 0.3342 5.9810 6.9385 12 1 1.3569 5.8925 7.2740 13 6 -0.5870 6.6924 7.6974 14 7 -1.8314 6.8005 7.2888 15 14 -0.0566 7.4952 9.2986 16 1 1.3853 7.2281 9.5324 17 1 -0.2810 8.9608 9.2156 18 1 -0.8525 6.9354 10.4204 19 6 2.1185 2.0606 -1.1597 20 8 2.4467 3.2312 -1.1520 21 6 1.8295 1.3830 -2.4399 22 6 2.0001 1.9240 -3.7363 23 6 1.6131 0.9472 -4.5897 24 7 1.2264 -0.1080 -3.8412 25 6 0.7281 -1.3773 -4.3764 26 6 1.5657 -2.5299 -3.8187 27 7 1.3584 0.1615 -2.5920 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7638 1.2697 1.9572 34 1 3.1827 2.7567 1.0731 35 1 0.8126 3.4797 1.1660 36 1 0.3937 1.9928 2.0502 37 1 2.3295 4.0065 2.9909 38 1 0.0401 4.8189 3.0512 39 1 -0.3799 3.3319 3.9350 40 1 -0.9734 5.4720 5.4615 41 1 -2.4745 7.2968 7.8188 42 1 2.3647 2.9082 -3.9911 43 1 1.6097 1.0031 -5.6683 44 1 -0.3135 -1.5108 -4.0846 45 1 0.8024 -1.3673 -5.4639 46 1 1.4914 -2.5400 -2.7313 47 1 1.1952 -3.4744 -4.2173 48 1 2.6074 -2.3964 -4.1105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482955680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:35 Heat of formation + Delta-G solvation = -3.760708 kcal Electronic energy + Delta-G solvation = -28626.167440 eV Core-core repulsion = 24524.531902 eV Total energy + Delta-G solvation = -4101.635538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63388 -40.83141 -40.15526 -37.67042 -36.52878 -35.82838 -35.38607 -33.30232 -32.36073 -31.52898 -30.99732 -30.10150 -27.82192 -26.23046 -25.24107 -24.26168 -23.37480 -22.63869 -22.04136 -21.15833 -20.26135 -19.90059 -18.38673 -17.92570 -17.90079 -17.28562 -17.07024 -16.83096 -16.49620 -16.07830 -15.87611 -15.48135 -15.27360 -15.10298 -14.91882 -14.86405 -14.49864 -14.35098 -14.13611 -13.86007 -13.75497 -13.51444 -13.27375 -13.24373 -12.96673 -12.91136 -12.89397 -12.60789 -12.41484 -12.37792 -12.20177 -12.11136 -11.92841 -11.52849 -11.48195 -11.14675 -10.41318 -10.16473 -10.06155 -10.03368 -9.73541 -9.45777 -8.47765 -5.96964 0.53126 1.21996 1.36432 1.41527 1.53369 1.56591 1.94847 2.02115 2.29162 2.32521 2.94704 3.18878 3.27468 3.51538 3.75906 3.98020 4.00260 4.07813 4.10341 4.17108 4.25908 4.28654 4.41249 4.41850 4.44436 4.49610 4.53775 4.63416 4.73494 4.76568 4.79800 4.82011 4.86548 4.93509 4.98926 5.06462 5.25837 5.33713 5.40161 5.44054 5.54888 5.81298 5.96037 6.04054 6.26200 6.30874 6.57971 6.86924 7.10705 7.12330 7.53366 8.08427 8.70006 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.001737 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.892382 B =16115.904460 C =16312.499940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.595 5.595 4 C 0.124 3.876 5 C 0.057 3.943 6 N -0.673 5.673 7 C 0.066 3.934 8 C 0.439 3.561 9 O -0.621 6.621 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.593 3.407 20 O -0.578 6.578 21 C -0.049 4.049 22 C -0.209 4.209 23 C 0.002 3.998 24 N -0.278 5.278 25 C 0.107 3.893 26 C -0.165 4.165 27 N -0.251 5.251 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.017 0.983 36 H 0.086 0.914 37 H 0.344 0.656 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.154 0.846 43 H 0.224 0.776 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -22.242 -29.860 37.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.001 3.999 5 C -0.073 4.073 6 N -0.305 5.305 7 C -0.067 4.067 8 C 0.226 3.774 9 O -0.507 6.507 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.381 3.619 20 O -0.456 6.456 21 C -0.207 4.207 22 C -0.238 4.238 23 C -0.141 4.141 24 N -0.067 5.067 25 C -0.011 4.011 26 C -0.223 4.223 27 N -0.088 5.088 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.172 0.828 43 H 0.241 0.759 44 H 0.122 0.878 45 H 0.156 0.844 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.322 -23.259 -28.596 36.885 hybrid contribution -0.187 2.375 -0.182 2.389 sum 1.135 -20.885 -28.779 35.576 Atomic orbital electron populations 1.22040 0.95314 1.02896 1.00809 1.22093 0.95162 0.80118 1.04873 1.47897 1.63965 1.15369 1.05366 1.21355 0.96066 0.98362 0.84158 1.22284 0.98644 0.97821 0.88579 1.60073 1.08083 1.36969 1.25415 1.21529 0.94547 0.97904 0.92719 1.20754 0.85952 0.82854 0.87812 1.90486 1.20921 1.65333 1.73990 1.41929 1.11820 1.46673 1.20532 1.19740 0.97267 1.30426 0.99005 0.90204 1.26092 0.94862 0.97616 1.02805 1.69685 1.03438 1.42311 1.40738 0.84829 0.78260 0.77936 0.77029 1.19754 1.19589 1.19425 1.17453 0.76428 0.84997 0.83013 1.90770 1.50253 1.17188 1.87382 1.21725 1.10651 0.93600 0.94678 1.21954 1.08852 1.02244 0.90705 1.23411 1.03030 0.86948 1.00678 1.46298 1.43556 1.14197 1.02696 1.22465 0.99831 0.77583 1.01205 1.22068 0.99942 0.98075 1.02223 1.73581 1.18299 1.15480 1.01487 0.89704 0.93513 0.94024 0.87571 0.88926 0.87603 0.91470 0.96450 0.89611 0.83787 0.92280 0.87440 0.76981 0.91252 0.82780 0.75946 0.87792 0.84413 0.92395 0.87974 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.75 71.98 0.70 -1.87 16 2 C 0.10 1.76 5.75 86.38 0.50 2.26 16 3 N -0.59 -14.54 2.49 -825.38 -2.05 -16.60 16 4 C 0.12 3.25 5.67 86.38 0.49 3.74 16 5 C 0.06 1.65 6.01 86.30 0.52 2.17 16 6 N -0.67 -23.85 6.13 -517.94 -3.17 -27.02 16 7 C 0.07 2.49 6.17 85.56 0.53 3.02 16 8 C 0.44 22.13 7.82 87.66 0.69 22.82 16 9 O -0.62 -36.02 15.78 -3.06 -0.05 -36.07 16 10 N -0.57 -30.74 5.29 -306.99 -1.62 -32.36 16 11 C -0.33 -19.68 9.68 84.04 0.81 -18.86 16 12 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -50.99 13.05 21.66 0.28 -50.70 16 15 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 C 0.59 17.28 7.62 86.74 0.66 17.94 16 20 O -0.58 -21.27 16.55 -3.94 -0.07 -21.33 16 21 C -0.05 -1.15 6.66 42.45 0.28 -0.87 16 22 C -0.21 -4.04 10.81 22.41 0.24 -3.80 16 23 C 0.00 0.02 11.40 83.54 0.95 0.98 16 24 N -0.28 -3.06 3.41 -347.95 -1.19 -4.24 16 25 C 0.11 0.21 7.12 86.38 0.61 0.82 16 26 C -0.17 -0.44 10.02 71.98 0.72 0.28 16 27 N -0.25 -4.38 7.02 -48.18 -0.34 -4.72 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.87 6.73 -2.38 -0.02 0.86 16 30 H 0.04 0.83 7.11 -2.39 -0.02 0.81 16 31 H 0.11 1.83 5.33 -2.39 -0.01 1.81 16 32 H 0.09 1.35 7.82 -2.39 -0.02 1.33 16 33 H 0.11 2.43 7.85 -2.39 -0.02 2.41 16 34 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 35 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 2.25 6.73 -2.39 -0.02 2.24 16 37 H 0.34 13.01 8.43 -89.69 -0.76 12.26 16 38 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.40 20.22 7.90 -92.71 -0.73 19.49 16 41 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.22 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.14 -0.65 8.04 -2.39 -0.02 -0.67 16 46 H 0.06 0.37 8.08 -2.39 -0.02 0.35 16 47 H 0.10 -0.17 8.14 -2.39 -0.02 -0.18 16 48 H 0.05 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -81.08 400.65 1.50 -79.58 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.50 Total: 39.10 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 8.18 Total: 28.31 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -8.09 Total: -135.65 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -0.11 Total: -57.40 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -81.08 1.50 -79.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482955680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.821 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds