Wall clock time and date at job start Tue Mar 31 2020 20:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 N 1.46501 * 109.47306 * 119.99764 * 2 1 3 5 5 C 1.34257 * 125.75897 * 275.00785 * 4 2 1 6 6 C 1.38037 * 107.42081 * 179.97438 * 5 4 2 7 7 C 1.47428 * 126.41638 * 179.97438 * 6 5 4 8 8 O 1.21599 * 119.99989 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99972 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47285 * 324.99710 * 10 9 7 12 12 C 1.53001 * 109.47376 * 84.99687 * 10 9 7 13 13 C 1.53005 * 109.47158 * 204.99803 * 10 9 7 14 14 N 1.46898 * 109.47053 * 55.00065 * 13 10 9 15 15 C 1.46899 * 111.00026 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47075 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99887 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99986 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99395 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00319 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00121 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46924 * 120.00287 * 23 21 19 26 26 H 1.48506 * 109.47011 * 239.99981 * 23 21 19 27 27 C 1.41295 * 107.17157 * 359.97438 * 6 5 4 28 28 N 1.30444 * 108.01985 * 0.02562 * 27 6 5 29 29 H 1.09004 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99915 * 1 2 3 31 31 H 1.08997 * 109.46917 * 59.99909 * 1 2 3 32 32 H 1.09000 * 109.47473 * 240.00085 * 2 1 3 33 33 H 1.08998 * 109.47678 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46915 * 300.00361 * 3 2 1 35 35 H 1.09008 * 109.47059 * 59.99657 * 3 2 1 36 36 H 1.08002 * 126.28642 * 359.97438 * 5 4 2 37 37 H 0.96996 * 120.00557 * 359.97438 * 9 7 6 38 38 H 1.09008 * 109.46973 * 60.00325 * 12 10 9 39 39 H 1.09001 * 109.47030 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.46920 * 300.00323 * 12 10 9 41 41 H 1.09001 * 109.46834 * 174.99543 * 13 10 9 42 42 H 1.08994 * 109.46954 * 295.00039 * 13 10 9 43 43 H 1.00895 * 111.00437 * 56.04390 * 14 13 10 44 44 H 1.09001 * 109.47028 * 299.99223 * 15 14 13 45 45 H 1.08996 * 109.47508 * 60.00009 * 15 14 13 46 46 H 0.97001 * 119.99918 * 359.97438 * 18 16 15 47 47 H 0.96994 * 120.00343 * 180.02562 * 22 21 19 48 48 H 1.08002 * 125.98990 * 179.73424 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1902 -0.1363 2.4069 6 6 2.6622 -1.1224 3.2496 7 6 2.9939 -0.9683 4.6778 8 8 2.8584 0.1115 5.2203 9 7 3.4472 -2.0241 5.3821 10 6 3.7763 -1.8711 6.8015 11 1 4.1939 -0.8788 6.9727 12 6 2.5083 -2.0424 7.6404 13 6 4.8018 -2.9326 7.2046 14 7 5.9709 -2.8450 6.3196 15 6 6.9787 -3.8520 6.6774 16 6 8.1607 -3.7313 5.7504 17 8 8.1631 -2.8895 4.8772 18 7 9.2147 -4.5594 5.8909 19 6 10.2899 -4.4500 5.0472 20 1 10.2919 -3.7004 4.2697 21 6 11.3767 -5.3034 5.1925 22 7 11.3739 -6.2158 6.1382 23 14 12.8412 -5.1548 4.0425 24 1 12.5987 -4.0577 3.0716 25 1 14.0625 -4.8551 4.8325 26 1 13.0269 -6.4330 3.3097 27 6 2.7680 -2.3073 2.4872 28 7 2.3835 -2.0395 1.2698 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.9951 0.8922 2.6725 37 1 3.5550 -2.8856 4.9495 38 1 2.0907 -3.0346 7.4692 39 1 2.7532 -1.9289 8.6964 40 1 1.7777 -1.2862 7.3531 41 1 5.1131 -2.7639 8.2355 42 1 4.3536 -3.9223 7.1176 43 1 6.3661 -1.9167 6.3333 44 1 7.3053 -3.6902 7.7047 45 1 6.5454 -4.8480 6.5865 46 1 9.2126 -5.2329 6.5890 47 1 12.1327 -6.8113 6.2399 48 1 3.1118 -3.2655 2.8478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483282581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:34 Heat of formation + Delta-G solvation = -3.821416 kcal Electronic energy + Delta-G solvation = -28510.568834 eV Core-core repulsion = 24408.930664 eV Total energy + Delta-G solvation = -4101.638170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54852 -39.35226 -38.24993 -36.53680 -36.06719 -34.21990 -33.59590 -31.44375 -31.16037 -30.60661 -29.66936 -27.82615 -27.55237 -25.05619 -24.19881 -23.15621 -22.42824 -21.17951 -20.15869 -20.04764 -19.21332 -18.08528 -17.84329 -16.55697 -16.14689 -15.75987 -15.67265 -15.21003 -15.08252 -14.77269 -14.54394 -14.43025 -14.23410 -13.88291 -13.80900 -13.48722 -13.27881 -13.22171 -12.99075 -12.75786 -12.62023 -12.53371 -12.35327 -11.94477 -11.88259 -11.74700 -11.69873 -11.51203 -11.46011 -11.11280 -11.04312 -10.86810 -10.33321 -10.21232 -9.73999 -9.71953 -9.50586 -9.01071 -8.67664 -8.44983 -8.06427 -7.94470 -6.40617 -3.81215 1.46805 2.10178 2.15102 3.17290 3.27775 3.35102 3.36158 3.59179 3.92628 4.03412 4.09764 4.32373 4.36416 4.53500 4.56089 4.65788 4.84728 4.96590 5.02310 5.09977 5.12881 5.16411 5.18094 5.25890 5.27673 5.35556 5.36677 5.50468 5.58258 5.59358 5.62197 5.63527 5.71824 5.80717 5.97512 6.00702 6.12712 6.27752 6.32015 6.65087 6.68448 7.19101 7.43392 7.56744 7.63962 7.75358 8.08072 8.44942 8.62787 9.19593 9.55944 10.07554 10.77249 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002343 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.558331 B =11948.947690 C =13955.590529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.126 3.874 6 C -0.289 4.289 7 C 0.599 3.401 8 O -0.562 6.562 9 N -0.703 5.703 10 C 0.148 3.852 11 H 0.086 0.914 12 C -0.161 4.161 13 C 0.048 3.952 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.086 3.914 28 N -0.298 5.298 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.183 0.817 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.077 9.086 -4.278 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.137 5.137 5 C -0.026 4.026 6 C -0.304 4.304 7 C 0.387 3.613 8 O -0.442 6.442 9 N -0.353 5.353 10 C 0.042 3.958 11 H 0.104 0.896 12 C -0.219 4.219 13 C -0.082 4.082 14 N -0.299 5.299 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.101 4.101 28 N -0.117 5.117 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.200 0.800 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.171 0.829 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.520 9.476 -6.242 26.114 hybrid contribution 1.449 -0.286 1.380 2.021 sum -22.071 9.190 -4.862 24.397 Atomic orbital electron populations 1.22249 0.93320 1.03470 1.03285 1.21386 0.94983 0.92958 0.85698 1.22250 1.02792 0.93718 1.03917 1.48757 1.48909 1.07623 1.08411 1.22812 0.95706 0.99433 0.84615 1.20253 1.19518 0.94669 0.95970 1.17174 0.76002 0.83664 0.84500 1.90733 1.55388 1.26531 1.71537 1.45558 1.66383 1.12969 1.10406 1.20908 0.94288 1.00037 0.80541 0.89581 1.22142 0.97863 1.02250 0.99695 1.22318 0.91840 0.99272 0.94803 1.60047 1.07602 1.09273 1.52970 1.21678 0.92630 0.97016 0.96884 1.19822 0.84495 0.85210 0.87869 1.90538 1.81144 1.38030 1.36779 1.41873 1.15522 1.31470 1.31320 1.19745 0.94046 1.17045 1.11846 0.87914 1.25256 0.99310 0.95799 0.97657 1.69616 1.32212 1.20129 1.32427 0.85809 0.80526 0.78265 0.79807 1.19230 1.20793 1.20744 1.24106 0.96734 0.99055 0.90251 1.77185 1.21215 0.92742 1.20586 0.91467 0.91740 0.90251 0.87536 0.91085 0.89698 0.91279 0.79997 0.76114 0.92355 0.91723 0.91886 0.93944 0.90465 0.82939 0.93887 0.89588 0.77492 0.91958 0.79286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.15 1.05 3.91 -67.93 -0.27 0.78 16 3 C -0.17 -0.87 8.82 37.16 0.33 -0.55 16 4 N -0.36 -3.75 3.50 -54.32 -0.19 -3.94 16 5 C 0.13 1.39 10.39 -16.56 -0.17 1.22 16 6 C -0.29 -3.69 6.13 -105.07 -0.64 -4.33 16 7 C 0.60 8.43 7.78 -12.52 -0.10 8.34 16 8 O -0.56 -9.46 16.56 5.28 0.09 -9.37 16 9 N -0.70 -8.53 4.79 -54.88 -0.26 -8.79 16 10 C 0.15 1.69 2.81 -67.93 -0.19 1.49 16 11 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 13 C 0.05 0.54 5.24 -3.82 -0.02 0.52 16 14 N -0.67 -10.27 5.85 -115.06 -0.67 -10.94 16 15 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 16 C 0.44 10.33 7.82 -10.99 -0.09 10.25 16 17 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 18 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.09 1.04 11.50 -16.98 -0.20 0.85 16 28 N -0.30 -3.79 12.50 30.86 0.39 -3.41 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.33 7.13 -51.92 -0.37 -0.04 16 36 H 0.18 1.65 7.23 -52.49 -0.38 1.27 16 37 H 0.40 4.44 7.56 -40.82 -0.31 4.13 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.35 5.97 8.43 -39.29 -0.33 5.64 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.19 1.83 7.50 -52.49 -0.39 1.44 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -35.26 407.59 -7.19 -42.45 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.51 Total: 15.95 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -0.91 Total: 9.69 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.07 Total: -65.31 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.17 Total: -25.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.26 -7.19 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483282581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.630 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds