Wall clock time and date at job start Tue Mar 31 2020 20:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 N 1.46501 * 109.47306 * 119.99764 * 2 1 3 5 5 C 1.34257 * 125.75897 * 275.00785 * 4 2 1 6 6 C 1.38037 * 107.42081 * 179.97438 * 5 4 2 7 7 C 1.47428 * 126.41638 * 179.97438 * 6 5 4 8 8 O 1.21599 * 119.99989 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99972 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47285 * 324.99710 * 10 9 7 12 12 C 1.53001 * 109.47376 * 84.99687 * 10 9 7 13 13 C 1.53005 * 109.47158 * 204.99803 * 10 9 7 14 14 N 1.46898 * 109.47053 * 55.00065 * 13 10 9 15 15 C 1.46899 * 111.00026 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47075 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99887 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99986 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99395 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00319 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00121 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46924 * 120.00287 * 23 21 19 26 26 H 1.48506 * 109.47011 * 239.99981 * 23 21 19 27 27 C 1.41295 * 107.17157 * 359.97438 * 6 5 4 28 28 N 1.30444 * 108.01985 * 0.02562 * 27 6 5 29 29 H 1.09004 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99915 * 1 2 3 31 31 H 1.08997 * 109.46917 * 59.99909 * 1 2 3 32 32 H 1.09000 * 109.47473 * 240.00085 * 2 1 3 33 33 H 1.08998 * 109.47678 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46915 * 300.00361 * 3 2 1 35 35 H 1.09008 * 109.47059 * 59.99657 * 3 2 1 36 36 H 1.08002 * 126.28642 * 359.97438 * 5 4 2 37 37 H 0.96996 * 120.00557 * 359.97438 * 9 7 6 38 38 H 1.09008 * 109.46973 * 60.00325 * 12 10 9 39 39 H 1.09001 * 109.47030 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.46920 * 300.00323 * 12 10 9 41 41 H 1.09001 * 109.46834 * 174.99543 * 13 10 9 42 42 H 1.08994 * 109.46954 * 295.00039 * 13 10 9 43 43 H 1.00895 * 111.00437 * 56.04390 * 14 13 10 44 44 H 1.09001 * 109.47028 * 299.99223 * 15 14 13 45 45 H 1.08996 * 109.47508 * 60.00009 * 15 14 13 46 46 H 0.97001 * 119.99918 * 359.97438 * 18 16 15 47 47 H 0.96994 * 120.00343 * 180.02562 * 22 21 19 48 48 H 1.08002 * 125.98990 * 179.73424 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1902 -0.1363 2.4069 6 6 2.6622 -1.1224 3.2496 7 6 2.9939 -0.9683 4.6778 8 8 2.8584 0.1115 5.2203 9 7 3.4472 -2.0241 5.3821 10 6 3.7763 -1.8711 6.8015 11 1 4.1939 -0.8788 6.9727 12 6 2.5083 -2.0424 7.6404 13 6 4.8018 -2.9326 7.2046 14 7 5.9709 -2.8450 6.3196 15 6 6.9787 -3.8520 6.6774 16 6 8.1607 -3.7313 5.7504 17 8 8.1631 -2.8895 4.8772 18 7 9.2147 -4.5594 5.8909 19 6 10.2899 -4.4500 5.0472 20 1 10.2919 -3.7004 4.2697 21 6 11.3767 -5.3034 5.1925 22 7 11.3739 -6.2158 6.1382 23 14 12.8412 -5.1548 4.0425 24 1 12.5987 -4.0577 3.0716 25 1 14.0625 -4.8551 4.8325 26 1 13.0269 -6.4330 3.3097 27 6 2.7680 -2.3073 2.4872 28 7 2.3835 -2.0395 1.2698 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.9951 0.8922 2.6725 37 1 3.5550 -2.8856 4.9495 38 1 2.0907 -3.0346 7.4692 39 1 2.7532 -1.9289 8.6964 40 1 1.7777 -1.2862 7.3531 41 1 5.1131 -2.7639 8.2355 42 1 4.3536 -3.9223 7.1176 43 1 6.3661 -1.9167 6.3333 44 1 7.3053 -3.6902 7.7047 45 1 6.5454 -4.8480 6.5865 46 1 9.2126 -5.2329 6.5890 47 1 12.1327 -6.8113 6.2399 48 1 3.1118 -3.2655 2.8478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483282581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:33 Heat of formation + Delta-G solvation = -31.213636 kcal Electronic energy + Delta-G solvation = -28511.756650 eV Core-core repulsion = 24408.930664 eV Total energy + Delta-G solvation = -4102.825986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.42212 -40.43343 -40.03398 -37.68053 -36.72104 -36.00619 -35.03424 -33.24622 -32.36564 -31.45039 -30.53400 -28.91793 -28.26014 -26.69176 -25.17567 -24.39226 -23.30364 -22.08919 -21.11217 -21.01121 -20.85851 -19.89178 -18.94252 -17.89000 -17.37290 -16.91304 -16.53141 -16.44715 -16.29510 -16.05316 -15.93048 -15.58444 -15.23905 -15.13873 -14.96383 -14.81683 -14.45029 -14.06044 -13.88721 -13.77708 -13.53576 -13.31991 -13.18402 -13.10218 -13.06177 -12.94109 -12.76569 -12.66750 -12.40669 -12.39413 -12.30590 -12.12307 -11.93412 -11.78433 -11.50432 -10.83786 -10.57850 -10.33188 -10.02976 -9.99798 -9.58216 -9.29816 -8.46160 -5.94321 0.56788 1.19348 1.36328 1.36606 1.41507 1.55503 2.08014 2.29251 2.40190 2.57223 2.94165 3.21529 3.41860 3.56403 3.75884 3.83684 3.87863 3.94264 4.05489 4.17213 4.23653 4.36551 4.37592 4.44159 4.56171 4.60389 4.63160 4.68035 4.70536 4.73625 4.77987 4.81944 4.85687 4.89252 5.11925 5.14516 5.18570 5.33799 5.41881 5.43289 5.68112 5.90355 5.91675 6.12429 6.36066 6.53411 6.61927 6.76330 7.14435 7.41574 7.58679 8.14690 8.71425 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002343 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.558331 B =11948.947690 C =13955.590529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.352 5.352 5 C 0.129 3.871 6 C -0.314 4.314 7 C 0.595 3.405 8 O -0.597 6.597 9 N -0.697 5.697 10 C 0.147 3.853 11 H 0.063 0.937 12 C -0.151 4.151 13 C 0.055 3.945 14 N -0.679 5.679 15 C 0.067 3.933 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.084 3.916 28 N -0.325 5.325 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.339 0.661 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.894 8.640 -4.040 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 C -0.222 4.222 4 N -0.131 5.131 5 C -0.024 4.024 6 C -0.329 4.329 7 C 0.384 3.616 8 O -0.480 6.480 9 N -0.346 5.346 10 C 0.042 3.958 11 H 0.082 0.918 12 C -0.210 4.210 13 C -0.075 4.075 14 N -0.311 5.311 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.104 4.104 28 N -0.145 5.145 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.246 0.754 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.157 0.843 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -24.357 8.977 -5.989 26.640 hybrid contribution 1.644 -0.103 1.272 2.081 sum -22.713 8.874 -4.717 24.837 Atomic orbital electron populations 1.22213 0.91840 1.02921 1.04608 1.21779 0.96141 0.93636 0.84385 1.22257 1.01795 0.92653 1.05486 1.49107 1.47866 1.06990 1.09148 1.23116 0.94668 0.99948 0.84627 1.20326 1.21227 0.95648 0.95714 1.17397 0.75688 0.83488 0.85035 1.90701 1.57205 1.27797 1.72313 1.45569 1.65480 1.12786 1.10792 1.20960 0.95325 0.99042 0.80443 0.91846 1.22055 0.96215 1.02537 1.00189 1.22385 0.89963 1.00186 0.94916 1.60051 1.08053 1.08155 1.54796 1.21543 0.90376 0.98708 0.95944 1.20987 0.85342 0.83436 0.87770 1.90509 1.82170 1.39510 1.38866 1.41937 1.15703 1.32231 1.31325 1.19655 0.96042 1.17664 1.12712 0.90629 1.26001 1.01262 0.95096 0.98939 1.69667 1.33102 1.20245 1.33054 0.84907 0.77485 0.78260 0.77902 1.20021 1.19587 1.19541 1.24373 0.96386 0.99591 0.90009 1.77121 1.22145 0.94221 1.21001 0.92908 0.91702 0.87603 0.87527 0.92585 0.87091 0.90758 0.78295 0.75412 0.90807 0.89965 0.93560 0.92018 0.88370 0.84298 0.91521 0.87126 0.76910 0.91331 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.52 71.98 0.69 -0.80 16 2 C 0.14 1.82 3.91 44.99 0.18 2.00 16 3 C -0.16 -1.48 8.82 71.98 0.64 -0.84 16 4 N -0.35 -7.33 3.50 -325.76 -1.14 -8.47 16 5 C 0.13 2.87 10.39 84.27 0.88 3.75 16 6 C -0.31 -8.14 6.13 -20.15 -0.12 -8.26 16 7 C 0.60 17.07 7.78 86.66 0.67 17.74 16 8 O -0.60 -20.66 16.56 -4.03 -0.07 -20.72 16 9 N -0.70 -16.67 4.79 -445.79 -2.14 -18.81 16 10 C 0.15 3.21 2.81 44.99 0.13 3.34 16 11 H 0.06 1.70 7.58 -2.38 -0.02 1.68 16 12 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 13 C 0.05 1.10 5.24 86.31 0.45 1.55 16 14 N -0.68 -20.03 5.85 -517.93 -3.03 -23.06 16 15 C 0.07 2.14 6.17 85.56 0.53 2.67 16 16 C 0.44 20.55 7.82 87.66 0.69 21.23 16 17 O -0.62 -34.83 15.78 -3.05 -0.05 -34.88 16 18 N -0.57 -29.30 5.29 -306.99 -1.62 -30.92 16 19 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 22 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 23 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.08 2.04 11.50 85.65 0.99 3.02 16 28 N -0.33 -8.33 12.50 -56.27 -0.70 -9.03 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.60 7.13 -2.38 -0.02 0.59 16 36 H 0.20 3.55 7.23 -2.91 -0.02 3.53 16 37 H 0.41 8.71 7.56 -92.71 -0.70 8.01 16 38 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.34 11.47 8.43 -89.70 -0.76 10.71 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.21 3.96 7.50 -2.91 -0.02 3.93 16 Total: -1.00 -78.11 407.59 0.04 -78.07 By element: Atomic # 1 Polarization: 47.79 SS G_CDS: -1.19 Total: 46.60 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 7.66 Total: 25.13 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -8.35 Total: -139.56 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.11 Total: -55.60 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -78.11 0.04 -78.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483282581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.858 kcal (2) G-P(sol) polarization free energy of solvation -78.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds