Wall clock time and date at job start Tue Mar 31 2020 20:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 C 1.53006 * 109.47148 * 120.00098 * 2 1 3 5 5 N 1.46893 * 109.47231 * 174.99747 * 4 2 1 6 6 C 1.46905 * 111.00119 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47023 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00354 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99590 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99630 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00298 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47195 * 89.99746 * 14 12 10 16 16 H 1.48498 * 109.47145 * 209.99606 * 14 12 10 17 17 H 1.48497 * 109.47021 * 329.99955 * 14 12 10 18 18 N 1.46504 * 109.47278 * 239.99668 * 2 1 3 19 19 C 1.34776 * 119.99735 * 84.99938 * 18 2 1 20 20 O 1.21282 * 119.99940 * 0.02562 * 19 18 2 21 21 C 1.50698 * 120.00035 * 179.97438 * 19 18 2 22 22 C 1.53006 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.39874 * 126.03496 * 90.02506 * 23 22 21 25 25 N 1.30837 * 108.20178 * 179.97438 * 24 23 22 26 26 N 1.40086 * 108.20579 * 0.02562 * 25 24 23 27 27 C 1.46498 * 126.04154 * 180.02562 * 26 25 24 28 28 C 1.34953 * 107.92341 * 359.75843 * 26 25 24 29 29 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 300.00177 * 1 2 3 31 31 H 1.08997 * 109.46609 * 59.99750 * 1 2 3 32 32 H 1.08995 * 109.47124 * 295.00165 * 4 2 1 33 33 H 1.08996 * 109.46977 * 54.99716 * 4 2 1 34 34 H 1.00907 * 111.00506 * 56.04644 * 5 4 2 35 35 H 1.09002 * 109.46756 * 299.99965 * 6 5 4 36 36 H 1.08999 * 109.47015 * 60.00235 * 6 5 4 37 37 H 0.97000 * 120.00214 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00766 * 180.02562 * 13 12 10 39 39 H 0.96998 * 120.00303 * 265.00112 * 18 2 1 40 40 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 41 41 H 1.08993 * 109.47304 * 300.00054 * 21 19 18 42 42 H 1.09001 * 109.46801 * 300.00442 * 22 21 19 43 43 H 1.09001 * 109.46998 * 60.00038 * 22 21 19 44 44 H 1.08003 * 125.89914 * 0.02562 * 24 23 22 45 45 H 1.08995 * 109.47479 * 89.97421 * 27 26 25 46 46 H 1.08996 * 109.47176 * 209.97724 * 27 26 25 47 47 H 1.09000 * 109.46865 * 329.97247 * 27 26 25 48 48 H 1.08002 * 126.12775 * 180.24011 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1904 6 6 4.0304 -1.5150 2.3768 7 6 5.5317 -1.6035 2.2813 8 8 6.1067 -1.1394 1.3194 9 7 6.2355 -2.1993 3.2643 10 6 7.6013 -2.2803 3.1772 11 1 8.1134 -1.8663 2.3211 12 6 8.3269 -2.8941 4.1909 13 7 7.7041 -3.3964 5.2333 14 14 10.1879 -3.0038 4.0727 15 1 10.7956 -1.8045 4.7031 16 1 10.6575 -4.2244 4.7762 17 1 10.5901 -3.0699 2.6447 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8591 1.1585 -2.4115 21 6 2.6500 -0.7286 -3.5874 22 6 2.7019 0.2546 -4.7586 23 6 3.2043 -0.4558 -5.9890 24 6 2.4161 -1.1161 -6.9373 25 7 3.2076 -1.6063 -7.8566 26 7 4.5264 -1.2734 -7.5216 27 6 5.7254 -1.6278 -8.2851 28 6 4.4969 -0.5633 -6.3743 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9281 0.0825 1.0824 35 1 3.7559 -0.9571 3.2721 36 1 3.6096 -2.5190 2.4309 37 1 5.7756 -2.5708 4.0334 38 1 8.2105 -3.8246 5.9411 39 1 2.2491 -1.6318 -1.1526 40 1 1.9778 -1.5509 -3.8325 41 1 3.6493 -1.1203 -3.3978 42 1 1.7028 0.6468 -4.9482 43 1 3.3744 1.0767 -4.5132 44 1 1.3400 -1.2052 -6.9150 45 1 5.9387 -0.8437 -9.0114 46 1 6.5709 -1.7333 -7.6054 47 1 5.5586 -2.5704 -8.8064 48 1 5.3520 -0.1558 -5.8555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483297094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:51 Heat of formation + Delta-G solvation = -5.277689 kcal Electronic energy + Delta-G solvation = -27935.358282 eV Core-core repulsion = 23833.656963 eV Total energy + Delta-G solvation = -4101.701319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39665 -39.75527 -38.32387 -36.70783 -34.50874 -34.23138 -33.64021 -32.78072 -31.29133 -31.04828 -29.44723 -27.59810 -27.08488 -25.07525 -24.21513 -23.18842 -21.30752 -21.30131 -20.41030 -20.03955 -19.25026 -17.91857 -17.33860 -16.75740 -16.56049 -15.85744 -15.64770 -15.50635 -15.08893 -14.66706 -14.59645 -14.51984 -14.07195 -13.97281 -13.68411 -13.48161 -13.36538 -13.21456 -13.04883 -12.77977 -12.57797 -12.56942 -12.13062 -12.03694 -11.98039 -11.77016 -11.54727 -11.49768 -11.20360 -11.06262 -10.91523 -10.65927 -10.41802 -10.24439 -9.75015 -9.63423 -9.53468 -8.96128 -8.55150 -8.49632 -8.11649 -7.98728 -6.44283 -3.85162 1.67764 2.30522 2.57105 2.78211 3.15646 3.24472 3.30028 3.31683 3.88121 4.04865 4.26796 4.29037 4.65279 4.75222 4.82315 4.83947 4.88924 5.04682 5.06894 5.08499 5.12431 5.14797 5.21843 5.30146 5.38780 5.45853 5.49088 5.58863 5.59851 5.64420 5.70190 5.76507 5.92852 5.95719 6.07791 6.09737 6.15239 6.23300 6.45778 6.59462 6.78506 7.13846 7.48034 7.52582 7.58498 7.65774 8.03594 8.36687 8.58553 9.15321 9.51659 10.03025 10.73426 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.002235 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.558385 B =12525.173451 C =15404.910041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.709 5.709 19 C 0.515 3.485 20 O -0.552 6.552 21 C -0.135 4.135 22 C -0.022 4.022 23 C -0.235 4.235 24 C 0.052 3.948 25 N -0.302 5.302 26 N -0.379 5.379 27 C 0.101 3.899 28 C 0.059 3.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.405 0.595 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.182 0.818 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 2.893 -17.310 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.103 0.897 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.360 5.360 19 C 0.302 3.698 20 O -0.431 6.431 21 C -0.175 4.175 22 C -0.061 4.061 23 C -0.247 4.247 24 C -0.134 4.134 25 N -0.123 5.123 26 N -0.161 5.161 27 C -0.040 4.040 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.240 0.760 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.199 0.801 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.129 2.662 -19.385 23.021 hybrid contribution 0.726 0.211 2.132 2.262 sum -11.403 2.873 -17.253 20.880 Atomic orbital electron populations 1.22133 0.95128 1.02135 1.02533 1.20911 0.93491 0.97474 0.84203 0.89690 1.22314 0.89487 1.00670 0.95772 1.60070 1.03078 1.26881 1.39846 1.21680 0.95283 0.99866 0.91409 1.19806 0.88019 0.84571 0.85030 1.90526 1.71123 1.51863 1.33172 1.41872 1.07413 1.50951 1.19828 1.19695 0.81511 1.35153 1.06516 0.87952 1.25263 1.00700 0.96765 0.95236 1.69605 1.36709 1.38655 1.09339 0.85858 0.82199 0.77648 0.78593 1.20419 1.20915 1.19409 1.45876 1.66740 1.14434 1.08964 1.20705 0.77044 0.87261 0.84770 1.90674 1.50825 1.16157 1.85399 1.21681 1.03432 0.99698 0.92707 1.19561 1.02133 0.95849 0.88541 1.20127 0.92200 1.10600 1.01763 1.23814 1.00019 0.97180 0.92397 1.77333 0.87031 1.24018 1.23955 1.48461 1.06089 1.42187 1.19345 1.21857 0.83183 1.02464 0.96496 1.22438 0.99441 0.97440 0.89371 0.92386 0.91757 0.91892 0.94010 0.90514 0.82995 0.93868 0.89611 0.77471 0.91861 0.75996 0.89179 0.88717 0.90599 0.90663 0.80132 0.90847 0.89308 0.89359 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.58 2.82 -67.92 -0.19 1.39 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 5 N -0.67 -9.97 5.85 -115.06 -0.67 -10.64 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 8 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 11 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 14 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 N -0.71 -7.83 4.80 -53.80 -0.26 -8.08 16 19 C 0.52 6.28 7.79 -10.99 -0.09 6.20 16 20 O -0.55 -8.55 15.64 5.56 0.09 -8.46 16 21 C -0.13 -1.29 5.68 -27.88 -0.16 -1.45 16 22 C -0.02 -0.21 4.99 -27.88 -0.14 -0.35 16 23 C -0.24 -2.31 5.35 -105.05 -0.56 -2.87 16 24 C 0.05 0.52 11.96 -17.36 -0.21 0.31 16 25 N -0.30 -3.48 12.58 30.63 0.39 -3.10 16 26 N -0.38 -3.67 4.01 -68.17 -0.27 -3.94 16 27 C 0.10 0.58 11.47 59.85 0.69 1.26 16 28 C 0.06 0.55 11.40 -17.22 -0.20 0.35 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.35 5.77 8.43 -39.29 -0.33 5.44 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.41 4.07 8.60 -40.82 -0.35 3.72 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.18 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 411.23 15.07 6.20 6.20 Total: -1.00 -35.04 411.23 -7.35 -42.39 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -7.67 Total: 15.71 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.88 Total: 7.17 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.15 Total: -63.41 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.17 Total: -23.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.04 -7.35 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483297094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds