Wall clock time and date at job start Tue Mar 31 2020 20:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 C 1.53006 * 109.47148 * 120.00098 * 2 1 3 5 5 N 1.46893 * 109.47231 * 174.99747 * 4 2 1 6 6 C 1.46905 * 111.00119 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47023 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00354 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99590 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99630 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00298 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47195 * 89.99746 * 14 12 10 16 16 H 1.48498 * 109.47145 * 209.99606 * 14 12 10 17 17 H 1.48497 * 109.47021 * 329.99955 * 14 12 10 18 18 N 1.46504 * 109.47278 * 239.99668 * 2 1 3 19 19 C 1.34776 * 119.99735 * 84.99938 * 18 2 1 20 20 O 1.21282 * 119.99940 * 0.02562 * 19 18 2 21 21 C 1.50698 * 120.00035 * 179.97438 * 19 18 2 22 22 C 1.53006 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.39874 * 126.03496 * 90.02506 * 23 22 21 25 25 N 1.30837 * 108.20178 * 179.97438 * 24 23 22 26 26 N 1.40086 * 108.20579 * 0.02562 * 25 24 23 27 27 C 1.46498 * 126.04154 * 180.02562 * 26 25 24 28 28 C 1.34953 * 107.92341 * 359.75843 * 26 25 24 29 29 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 300.00177 * 1 2 3 31 31 H 1.08997 * 109.46609 * 59.99750 * 1 2 3 32 32 H 1.08995 * 109.47124 * 295.00165 * 4 2 1 33 33 H 1.08996 * 109.46977 * 54.99716 * 4 2 1 34 34 H 1.00907 * 111.00506 * 56.04644 * 5 4 2 35 35 H 1.09002 * 109.46756 * 299.99965 * 6 5 4 36 36 H 1.08999 * 109.47015 * 60.00235 * 6 5 4 37 37 H 0.97000 * 120.00214 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00766 * 180.02562 * 13 12 10 39 39 H 0.96998 * 120.00303 * 265.00112 * 18 2 1 40 40 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 41 41 H 1.08993 * 109.47304 * 300.00054 * 21 19 18 42 42 H 1.09001 * 109.46801 * 300.00442 * 22 21 19 43 43 H 1.09001 * 109.46998 * 60.00038 * 22 21 19 44 44 H 1.08003 * 125.89914 * 0.02562 * 24 23 22 45 45 H 1.08995 * 109.47479 * 89.97421 * 27 26 25 46 46 H 1.08996 * 109.47176 * 209.97724 * 27 26 25 47 47 H 1.09000 * 109.46865 * 329.97247 * 27 26 25 48 48 H 1.08002 * 126.12775 * 180.24011 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1904 6 6 4.0304 -1.5150 2.3768 7 6 5.5317 -1.6035 2.2813 8 8 6.1067 -1.1394 1.3194 9 7 6.2355 -2.1993 3.2643 10 6 7.6013 -2.2803 3.1772 11 1 8.1134 -1.8663 2.3211 12 6 8.3269 -2.8941 4.1909 13 7 7.7041 -3.3964 5.2333 14 14 10.1879 -3.0038 4.0727 15 1 10.7956 -1.8045 4.7031 16 1 10.6575 -4.2244 4.7762 17 1 10.5901 -3.0699 2.6447 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8591 1.1585 -2.4115 21 6 2.6500 -0.7286 -3.5874 22 6 2.7019 0.2546 -4.7586 23 6 3.2043 -0.4558 -5.9890 24 6 2.4161 -1.1161 -6.9373 25 7 3.2076 -1.6063 -7.8566 26 7 4.5264 -1.2734 -7.5216 27 6 5.7254 -1.6278 -8.2851 28 6 4.4969 -0.5633 -6.3743 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9281 0.0825 1.0824 35 1 3.7559 -0.9571 3.2721 36 1 3.6096 -2.5190 2.4309 37 1 5.7756 -2.5708 4.0334 38 1 8.2105 -3.8246 5.9411 39 1 2.2491 -1.6318 -1.1526 40 1 1.9778 -1.5509 -3.8325 41 1 3.6493 -1.1203 -3.3978 42 1 1.7028 0.6468 -4.9482 43 1 3.3744 1.0767 -4.5132 44 1 1.3400 -1.2052 -6.9150 45 1 5.9387 -0.8437 -9.0114 46 1 6.5709 -1.7333 -7.6054 47 1 5.5586 -2.5704 -8.8064 48 1 5.3520 -0.1558 -5.8555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483297094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:50 Heat of formation + Delta-G solvation = -32.131269 kcal Electronic energy + Delta-G solvation = -27936.522741 eV Core-core repulsion = 23833.656963 eV Total energy + Delta-G solvation = -4102.865778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11161 -40.73099 -40.09273 -37.80438 -36.01729 -35.24543 -35.00794 -33.49879 -33.24159 -32.00506 -30.18892 -28.93089 -27.71094 -26.68437 -25.11979 -24.42373 -22.18845 -21.99218 -21.30677 -21.00963 -20.83169 -19.88854 -18.22357 -17.94672 -17.38292 -17.29608 -16.55480 -16.43752 -16.35452 -16.18778 -15.96668 -15.38232 -15.24474 -15.18072 -14.82318 -14.71360 -14.31819 -14.09331 -13.89598 -13.65030 -13.56621 -13.49480 -13.27577 -13.07551 -12.99225 -12.87892 -12.79946 -12.77168 -12.61076 -12.40758 -12.12018 -11.99143 -11.79722 -11.49638 -11.43032 -10.74879 -10.35475 -10.33347 -10.00201 -9.88974 -9.33106 -9.26879 -8.45909 -5.94295 0.96422 1.38326 1.42287 1.54695 1.71272 1.81031 1.84181 2.07526 2.29429 2.44920 2.93029 3.21761 3.54569 3.67934 3.85916 3.99104 4.03527 4.20900 4.27977 4.32434 4.36225 4.40970 4.42538 4.43968 4.54704 4.61366 4.65721 4.68655 4.69481 4.78315 4.79843 4.83910 4.88169 4.96828 5.12697 5.30891 5.32307 5.39155 5.41735 5.68962 5.75320 5.89167 6.10852 6.14894 6.34354 6.61540 6.75343 6.75590 7.14026 7.44500 7.58279 8.13714 8.71401 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.002235 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.558385 B =12525.173451 C =15404.910041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.677 5.677 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.273 1.273 18 N -0.704 5.704 19 C 0.511 3.489 20 O -0.590 6.590 21 C -0.126 4.126 22 C -0.012 4.012 23 C -0.247 4.247 24 C 0.047 3.953 25 N -0.336 5.336 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.056 3.944 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.412 0.588 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.200 0.800 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 1.973 -16.809 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.308 5.308 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.355 5.355 19 C 0.299 3.701 20 O -0.471 6.471 21 C -0.166 4.166 22 C -0.051 4.051 23 C -0.259 4.259 24 C -0.138 4.138 25 N -0.158 5.158 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.091 4.091 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.248 0.752 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.217 0.783 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.109 0.891 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.605 1.705 -18.868 22.755 hybrid contribution 0.846 0.527 1.952 2.192 sum -11.758 2.232 -16.916 20.722 Atomic orbital electron populations 1.22045 0.93360 1.03123 1.02482 1.20916 0.94745 0.96204 0.84184 0.92096 1.22374 0.86818 1.02056 0.96241 1.60077 1.05348 1.26212 1.39206 1.21544 0.90289 1.01822 0.93009 1.20942 0.90680 0.82374 0.83514 1.90497 1.72846 1.53021 1.34574 1.41945 1.06824 1.51787 1.20624 1.19641 0.83130 1.36817 1.06591 0.90418 1.26015 1.04798 0.95896 0.94599 1.69661 1.38218 1.38616 1.09623 0.84953 0.77045 0.78138 0.78374 1.19763 1.19578 1.19741 1.45901 1.66112 1.14681 1.08789 1.21145 0.76445 0.86874 0.85643 1.90656 1.52632 1.17823 1.86023 1.21649 1.03728 0.99832 0.91379 1.19415 1.01527 0.95463 0.88731 1.20171 0.92613 1.11208 1.01887 1.24178 1.01000 0.96670 0.91992 1.77273 0.88160 1.25358 1.25055 1.48788 1.06376 1.41825 1.19591 1.22152 0.82494 1.02988 0.97094 1.22836 1.00039 0.96902 0.89304 0.90807 0.90333 0.93448 0.92393 0.88533 0.84277 0.91664 0.87246 0.76955 0.91336 0.75219 0.87155 0.88621 0.91013 0.92016 0.78298 0.89656 0.87277 0.89137 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.48 71.98 0.68 -1.78 16 2 C 0.14 2.97 2.82 44.99 0.13 3.10 16 3 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 4 C 0.05 1.05 5.24 86.31 0.45 1.50 16 5 N -0.68 -19.14 5.85 -517.94 -3.03 -22.17 16 6 C 0.07 2.05 6.17 85.55 0.53 2.58 16 7 C 0.44 20.01 7.82 87.65 0.69 20.70 16 8 O -0.62 -33.61 15.78 -3.06 -0.05 -33.66 16 9 N -0.57 -28.70 5.29 -306.97 -1.62 -30.32 16 10 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 13 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 14 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 N -0.70 -14.80 4.80 -442.51 -2.12 -16.92 16 19 C 0.51 12.33 7.79 87.66 0.68 13.01 16 20 O -0.59 -18.62 15.64 -3.04 -0.05 -18.67 16 21 C -0.13 -2.33 5.68 29.85 0.17 -2.16 16 22 C -0.01 -0.24 4.99 29.85 0.15 -0.09 16 23 C -0.25 -4.75 5.35 -20.14 -0.11 -4.86 16 24 C 0.05 0.92 11.96 85.24 1.02 1.94 16 25 N -0.34 -7.64 12.58 -57.02 -0.72 -8.36 16 26 N -0.38 -7.14 4.01 -369.58 -1.48 -8.63 16 27 C 0.09 0.95 11.47 127.77 1.47 2.42 16 28 C 0.06 1.00 11.40 83.54 0.95 1.95 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.34 11.00 8.43 -89.69 -0.76 10.24 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.41 7.57 8.60 -92.71 -0.80 6.77 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.75 411.23 0.03 -76.72 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -1.29 Total: 45.95 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 8.09 Total: 20.32 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -8.70 Total: -135.03 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.10 Total: -52.32 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -76.75 0.03 -76.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483297094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.585 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds