Wall clock time and date at job start Tue Mar 31 2020 19:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47441 * 2 1 4 4 C 1.53009 * 109.46800 * 240.00460 * 2 1 3 5 5 N 1.46903 * 109.46702 * 185.18667 * 4 2 1 6 6 C 1.46902 * 110.99801 * 163.93748 * 5 4 2 7 7 C 1.46901 * 110.99812 * 287.88332 * 5 4 2 8 8 C 1.50703 * 109.47180 * 170.00338 * 7 5 4 9 9 O 1.21294 * 119.99430 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99996 * 180.02562 * 8 7 5 11 11 C 1.37101 * 119.99671 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00183 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99460 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00448 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99708 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.46956 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47341 * 119.99514 * 15 13 11 18 18 H 1.48496 * 109.46985 * 239.99943 * 15 13 11 19 19 N 1.46497 * 109.47556 * 120.00503 * 2 1 3 20 20 C 1.34782 * 119.99882 * 274.60486 * 19 2 1 21 21 O 1.21282 * 119.99635 * 359.97438 * 20 19 2 22 22 C 1.50696 * 119.99831 * 179.97438 * 20 19 2 23 23 C 1.53005 * 109.46882 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.46940 * 179.97438 * 23 22 20 25 25 C 1.34661 * 126.59686 * 275.04799 * 24 23 22 26 26 N 1.34127 * 108.02230 * 179.74534 * 25 24 23 27 27 C 1.30499 * 109.25703 * 0.37144 * 26 25 24 28 28 N 1.35045 * 108.69474 * 359.62483 * 27 26 25 29 29 H 0.97002 * 126.39209 * 180.24800 * 28 27 26 30 30 H 1.08995 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46574 * 299.99975 * 1 2 3 32 32 H 1.08997 * 109.47133 * 59.99674 * 1 2 3 33 33 H 1.08998 * 109.46908 * 305.17868 * 4 2 1 34 34 H 1.08993 * 109.47159 * 65.18095 * 4 2 1 35 35 H 1.08997 * 109.47112 * 54.89018 * 6 5 4 36 36 H 1.08999 * 109.47112 * 174.89039 * 6 5 4 37 37 H 1.09001 * 109.46950 * 294.89143 * 6 5 4 38 38 H 1.09003 * 109.47427 * 290.00623 * 7 5 4 39 39 H 1.09003 * 109.46613 * 50.00575 * 7 5 4 40 40 H 0.96998 * 120.00033 * 0.02562 * 10 8 7 41 41 H 0.96998 * 119.99889 * 180.02562 * 14 13 11 42 42 H 0.96997 * 120.00329 * 94.60196 * 19 2 1 43 43 H 1.08998 * 109.47421 * 60.00145 * 22 20 19 44 44 H 1.09003 * 109.47285 * 299.99821 * 22 20 19 45 45 H 1.09003 * 109.46749 * 60.00547 * 23 22 20 46 46 H 1.08992 * 109.47534 * 300.00640 * 23 22 20 47 47 H 1.08007 * 125.98846 * 359.92082 * 25 24 23 48 48 H 1.08001 * 125.65181 * 179.89970 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5036 -0.8306 -1.1884 6 6 3.9975 -1.8270 -2.1483 7 6 4.1388 0.4751 -1.4114 8 6 5.6104 0.3774 -1.1015 9 8 6.0835 -0.6765 -0.7317 10 7 6.4006 1.4609 -1.2352 11 6 7.7393 1.3720 -0.9527 12 1 8.1606 0.4337 -0.6234 13 6 8.5539 2.4893 -1.0901 14 7 8.0412 3.6312 -1.4902 15 14 10.3780 2.3681 -0.7059 16 1 10.7027 0.9838 -0.2774 17 1 11.1632 2.7081 -1.9195 18 1 10.7180 3.3161 0.3854 19 7 2.0184 -0.6907 1.1960 20 6 2.1548 -0.0165 2.3551 21 8 1.8735 1.1621 2.4077 22 6 2.6566 -0.7271 3.5856 23 6 2.7182 0.2586 4.7543 24 6 3.2195 -0.4522 5.9849 25 6 2.4813 -1.1644 6.8574 26 7 3.3024 -1.6370 7.8069 27 6 4.5202 -1.2380 7.5603 28 7 4.5130 -0.4986 6.4303 29 1 5.2811 -0.0790 6.0122 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6028 -1.7186 -1.2970 34 1 1.7544 -0.1566 -2.1368 35 1 3.6343 -1.5813 -3.1462 36 1 5.0875 -1.8234 -2.1473 37 1 3.6371 -2.8155 -1.8636 38 1 4.0055 0.7711 -2.4520 39 1 3.6790 1.2187 -0.7604 40 1 6.0221 2.3037 -1.5306 41 1 8.6099 4.4110 -1.5865 42 1 2.2437 -1.6332 1.1539 43 1 3.6529 -1.1256 3.3941 44 1 1.9799 -1.5445 3.8345 45 1 1.7220 0.6574 4.9460 46 1 3.3950 1.0758 4.5051 47 1 1.4153 -1.3289 6.8008 48 1 5.3903 -1.4655 8.1582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483346420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:47 Heat of formation + Delta-G solvation = -17.476076 kcal Electronic energy + Delta-G solvation = -29267.873941 eV Core-core repulsion = 25165.643660 eV Total energy + Delta-G solvation = -4102.230281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15038 -39.84711 -38.64307 -36.99064 -34.78754 -33.97042 -33.79581 -32.43192 -31.27900 -31.14421 -28.72815 -28.08144 -26.98184 -24.81705 -24.66249 -22.51963 -21.66123 -21.11176 -20.68750 -20.24070 -19.14065 -18.07266 -17.87600 -16.98244 -16.22785 -16.16484 -15.67328 -15.22705 -15.07361 -14.76305 -14.52899 -14.42518 -14.06287 -13.90374 -13.69165 -13.58207 -13.55248 -13.27067 -13.02601 -12.75016 -12.35097 -12.24594 -12.16402 -12.05794 -11.82235 -11.53102 -11.49266 -11.30525 -11.23239 -11.07395 -10.65425 -10.38299 -10.26270 -10.15857 -10.10652 -9.75410 -9.51960 -8.93147 -8.49986 -8.47439 -8.02218 -7.92730 -6.44916 -3.85958 1.89256 2.77560 2.98479 3.02600 3.12445 3.23141 3.29408 3.32185 3.86742 3.95003 4.19554 4.50345 4.66037 4.71174 4.85169 4.91151 5.04304 5.08543 5.16843 5.19045 5.26063 5.29330 5.39372 5.44027 5.47816 5.52777 5.60394 5.64004 5.65519 5.69006 5.89497 5.93794 5.94927 5.99948 6.09443 6.18686 6.25006 6.44601 6.59169 6.61666 7.19414 7.23066 7.29924 7.51543 7.65014 7.91740 8.02860 8.36715 8.58247 9.14592 9.51390 10.02807 10.72847 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003386 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.737642 B = 8267.401689 C =11112.153356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.515 5.515 6 C 0.024 3.976 7 C 0.043 3.957 8 C 0.446 3.554 9 O -0.579 6.579 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.900 5.900 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.705 5.705 20 C 0.517 3.483 21 O -0.549 6.549 22 C -0.135 4.135 23 C -0.029 4.029 24 C -0.016 4.016 25 C -0.028 4.028 26 N -0.497 5.497 27 C 0.180 3.820 28 N -0.565 5.565 29 H 0.422 0.578 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.013 0.987 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.403 0.597 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.168 0.832 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -7.821 6.751 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.124 4.124 7 C -0.089 4.089 8 C 0.231 3.769 9 O -0.464 6.464 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.755 3.245 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.355 5.355 20 C 0.303 3.697 21 O -0.427 6.427 22 C -0.175 4.175 23 C -0.068 4.068 24 C -0.132 4.132 25 C -0.176 4.176 26 N -0.216 5.216 27 C -0.104 4.104 28 N -0.168 5.168 29 H 0.260 0.740 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.238 0.762 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.185 0.815 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.413 -8.177 8.150 17.698 hybrid contribution 1.317 1.090 -1.804 2.486 sum -12.096 -7.087 6.346 15.389 Atomic orbital electron populations 1.22142 0.95191 1.02005 1.02602 1.20947 0.93170 0.97793 0.84166 0.89476 1.22492 0.89142 1.00816 0.96157 1.61561 1.03128 1.07302 1.51878 1.22516 1.03863 0.94509 0.91524 1.21918 0.95479 0.91575 0.99886 1.19695 0.87108 0.85257 0.84840 1.90475 1.75423 1.28902 1.51563 1.41883 1.08478 1.10661 1.59036 1.19723 0.82969 0.97985 1.42162 0.87925 1.25264 1.00580 0.94800 0.97294 1.69621 1.36761 1.00851 1.46918 0.85822 0.82110 0.78511 0.78021 1.19259 1.20729 1.20752 1.45753 1.66726 1.14043 1.09012 1.20514 0.77186 0.87264 0.84702 1.90697 1.50811 1.15858 1.85288 1.21637 1.03748 0.99505 0.92657 1.19756 1.02978 0.96209 0.87836 1.21347 0.84419 1.06725 1.00754 1.22089 0.99816 1.02005 0.93662 1.70268 1.00532 1.23997 1.26820 1.24959 0.98254 0.97382 0.89792 1.43380 1.09517 1.41520 1.22402 0.73985 0.92489 0.91847 0.91750 0.90296 0.93453 0.96797 0.88684 0.92144 0.93519 0.89504 0.77523 0.91896 0.76238 0.88717 0.88653 0.88741 0.90149 0.81486 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.49 37.16 0.35 -1.15 16 2 C 0.14 1.67 2.52 -67.93 -0.17 1.50 16 3 H 0.09 1.24 6.22 -51.93 -0.32 0.92 16 4 C 0.04 0.48 4.53 -3.82 -0.02 0.46 16 5 N -0.51 -7.74 4.17 -244.36 -1.02 -8.76 16 6 C 0.02 0.35 9.19 60.07 0.55 0.90 16 7 C 0.04 0.75 5.30 -4.97 -0.03 0.72 16 8 C 0.45 10.25 7.42 -10.99 -0.08 10.17 16 9 O -0.58 -14.95 13.96 5.54 0.08 -14.87 16 10 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 15 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 N -0.70 -8.17 4.79 -53.80 -0.26 -8.43 16 20 C 0.52 6.73 7.80 -10.98 -0.09 6.64 16 21 O -0.55 -9.05 15.64 5.56 0.09 -8.96 16 22 C -0.14 -1.38 5.68 -27.88 -0.16 -1.53 16 23 C -0.03 -0.30 5.06 -27.88 -0.14 -0.44 16 24 C -0.02 -0.17 6.49 -81.60 -0.53 -0.70 16 25 C -0.03 -0.32 11.79 -17.82 -0.21 -0.53 16 26 N -0.50 -6.21 11.25 -14.67 -0.16 -6.38 16 27 C 0.18 1.75 13.04 -90.37 -1.18 0.57 16 28 N -0.56 -5.28 6.15 -10.30 -0.06 -5.35 16 29 H 0.42 3.08 8.96 -40.82 -0.37 2.71 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.74 7.99 -51.93 -0.42 0.32 16 34 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 36 H 0.09 1.77 5.79 -51.93 -0.30 1.47 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 39 H 0.09 1.49 6.50 -51.93 -0.34 1.15 16 40 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.40 4.09 8.61 -40.82 -0.35 3.74 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 47 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 48 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -34.71 401.58 -9.00 -43.71 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -7.41 Total: 16.37 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.94 Total: 8.76 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.84 Total: -66.81 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.71 -9.00 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483346420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds