Wall clock time and date at job start Tue Mar 31 2020 19:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47441 * 2 1 4 4 C 1.53009 * 109.46800 * 240.00460 * 2 1 3 5 5 N 1.46903 * 109.46702 * 185.18667 * 4 2 1 6 6 C 1.46902 * 110.99801 * 163.93748 * 5 4 2 7 7 C 1.46901 * 110.99812 * 287.88332 * 5 4 2 8 8 C 1.50703 * 109.47180 * 170.00338 * 7 5 4 9 9 O 1.21294 * 119.99430 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99996 * 180.02562 * 8 7 5 11 11 C 1.37101 * 119.99671 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00183 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99460 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00448 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99708 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.46956 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47341 * 119.99514 * 15 13 11 18 18 H 1.48496 * 109.46985 * 239.99943 * 15 13 11 19 19 N 1.46497 * 109.47556 * 120.00503 * 2 1 3 20 20 C 1.34782 * 119.99882 * 274.60486 * 19 2 1 21 21 O 1.21282 * 119.99635 * 359.97438 * 20 19 2 22 22 C 1.50696 * 119.99831 * 179.97438 * 20 19 2 23 23 C 1.53005 * 109.46882 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.46940 * 179.97438 * 23 22 20 25 25 C 1.34661 * 126.59686 * 275.04799 * 24 23 22 26 26 N 1.34127 * 108.02230 * 179.74534 * 25 24 23 27 27 C 1.30499 * 109.25703 * 0.37144 * 26 25 24 28 28 N 1.35045 * 108.69474 * 359.62483 * 27 26 25 29 29 H 0.97002 * 126.39209 * 180.24800 * 28 27 26 30 30 H 1.08995 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46574 * 299.99975 * 1 2 3 32 32 H 1.08997 * 109.47133 * 59.99674 * 1 2 3 33 33 H 1.08998 * 109.46908 * 305.17868 * 4 2 1 34 34 H 1.08993 * 109.47159 * 65.18095 * 4 2 1 35 35 H 1.08997 * 109.47112 * 54.89018 * 6 5 4 36 36 H 1.08999 * 109.47112 * 174.89039 * 6 5 4 37 37 H 1.09001 * 109.46950 * 294.89143 * 6 5 4 38 38 H 1.09003 * 109.47427 * 290.00623 * 7 5 4 39 39 H 1.09003 * 109.46613 * 50.00575 * 7 5 4 40 40 H 0.96998 * 120.00033 * 0.02562 * 10 8 7 41 41 H 0.96998 * 119.99889 * 180.02562 * 14 13 11 42 42 H 0.96997 * 120.00329 * 94.60196 * 19 2 1 43 43 H 1.08998 * 109.47421 * 60.00145 * 22 20 19 44 44 H 1.09003 * 109.47285 * 299.99821 * 22 20 19 45 45 H 1.09003 * 109.46749 * 60.00547 * 23 22 20 46 46 H 1.08992 * 109.47534 * 300.00640 * 23 22 20 47 47 H 1.08007 * 125.98846 * 359.92082 * 25 24 23 48 48 H 1.08001 * 125.65181 * 179.89970 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5036 -0.8306 -1.1884 6 6 3.9975 -1.8270 -2.1483 7 6 4.1388 0.4751 -1.4114 8 6 5.6104 0.3774 -1.1015 9 8 6.0835 -0.6765 -0.7317 10 7 6.4006 1.4609 -1.2352 11 6 7.7393 1.3720 -0.9527 12 1 8.1606 0.4337 -0.6234 13 6 8.5539 2.4893 -1.0901 14 7 8.0412 3.6312 -1.4902 15 14 10.3780 2.3681 -0.7059 16 1 10.7027 0.9838 -0.2774 17 1 11.1632 2.7081 -1.9195 18 1 10.7180 3.3161 0.3854 19 7 2.0184 -0.6907 1.1960 20 6 2.1548 -0.0165 2.3551 21 8 1.8735 1.1621 2.4077 22 6 2.6566 -0.7271 3.5856 23 6 2.7182 0.2586 4.7543 24 6 3.2195 -0.4522 5.9849 25 6 2.4813 -1.1644 6.8574 26 7 3.3024 -1.6370 7.8069 27 6 4.5202 -1.2380 7.5603 28 7 4.5130 -0.4986 6.4303 29 1 5.2811 -0.0790 6.0122 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6028 -1.7186 -1.2970 34 1 1.7544 -0.1566 -2.1368 35 1 3.6343 -1.5813 -3.1462 36 1 5.0875 -1.8234 -2.1473 37 1 3.6371 -2.8155 -1.8636 38 1 4.0055 0.7711 -2.4520 39 1 3.6790 1.2187 -0.7604 40 1 6.0221 2.3037 -1.5306 41 1 8.6099 4.4110 -1.5865 42 1 2.2437 -1.6332 1.1539 43 1 3.6529 -1.1256 3.3941 44 1 1.9799 -1.5445 3.8345 45 1 1.7220 0.6574 4.9460 46 1 3.3950 1.0758 4.5051 47 1 1.4153 -1.3289 6.8008 48 1 5.3903 -1.4655 8.1582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483346420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:46 Heat of formation + Delta-G solvation = -43.415870 kcal Electronic energy + Delta-G solvation = -29268.998775 eV Core-core repulsion = 25165.643660 eV Total energy + Delta-G solvation = -4103.355115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.94315 -40.91998 -40.26488 -38.30667 -36.14499 -35.53104 -34.87898 -33.28565 -33.24348 -32.07893 -29.64627 -29.50273 -27.95742 -26.61450 -25.61515 -23.69184 -22.46382 -22.08008 -21.62183 -21.24161 -20.83014 -19.85293 -18.88351 -18.08630 -17.66734 -17.24273 -16.73664 -16.61318 -16.43883 -16.03211 -15.80070 -15.44497 -15.36729 -15.23018 -15.05533 -14.79882 -14.43391 -14.21915 -14.10369 -13.79896 -13.62767 -13.42587 -13.27391 -13.13022 -13.04941 -12.90425 -12.78640 -12.67023 -12.45304 -12.36467 -12.16523 -12.13025 -11.68037 -11.45396 -11.00339 -10.94300 -10.80355 -10.27157 -10.01167 -9.91317 -9.30949 -9.20725 -8.47583 -5.96419 1.10450 1.34768 1.39784 1.53855 1.76031 2.04384 2.18031 2.24638 2.26883 2.44307 2.79941 3.19251 3.37246 3.70097 3.82848 3.93511 4.02516 4.07830 4.14224 4.20451 4.32880 4.33723 4.43435 4.50529 4.52450 4.58719 4.63154 4.66086 4.68609 4.73492 4.80682 4.82751 4.86557 5.08965 5.10627 5.21734 5.32611 5.37028 5.39563 5.65200 5.80078 5.87636 6.06177 6.21164 6.53289 6.58888 6.70418 7.11810 7.12735 7.39714 7.55385 8.10473 8.70250 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003386 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.737642 B = 8267.401689 C =11112.153356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.056 0.944 4 C 0.049 3.951 5 N -0.528 5.528 6 C 0.029 3.971 7 C 0.057 3.943 8 C 0.445 3.555 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.329 4.329 12 H 0.081 0.919 13 C -0.015 4.015 14 N -0.923 5.923 15 Si 0.992 3.008 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.699 5.699 20 C 0.510 3.490 21 O -0.589 6.589 22 C -0.125 4.125 23 C -0.020 4.020 24 C -0.022 4.022 25 C -0.041 4.041 26 N -0.535 5.535 27 C 0.186 3.814 28 N -0.563 5.563 29 H 0.431 0.569 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.412 0.588 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.179 0.821 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -8.874 6.446 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.074 0.926 4 C -0.079 4.079 5 N -0.252 5.252 6 C -0.119 4.119 7 C -0.074 4.074 8 C 0.232 3.768 9 O -0.494 6.494 10 N -0.215 5.215 11 C -0.459 4.459 12 H 0.099 0.901 13 C -0.214 4.214 14 N -0.564 5.564 15 Si 0.816 3.184 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.198 1.198 19 N -0.349 5.349 20 C 0.298 3.702 21 O -0.470 6.470 22 C -0.165 4.165 23 C -0.059 4.059 24 C -0.139 4.139 25 C -0.188 4.188 26 N -0.255 5.255 27 C -0.098 4.098 28 N -0.167 5.167 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.248 0.752 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.197 0.803 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.120 -9.249 7.814 18.600 hybrid contribution 1.489 1.363 -1.714 2.648 sum -12.631 -7.885 6.101 16.092 Atomic orbital electron populations 1.22045 0.93122 1.03285 1.02468 1.20983 0.94708 0.96229 0.84365 0.92565 1.22569 0.86299 1.02727 0.96300 1.61512 1.05436 1.05831 1.52410 1.22411 1.01177 0.95718 0.92612 1.21715 0.91448 0.93423 1.00842 1.20683 0.89207 0.84064 0.82851 1.90453 1.76741 1.29892 1.52348 1.41983 1.08186 1.11351 1.59992 1.19686 0.84521 0.97701 1.43962 0.90127 1.26054 1.04592 0.94165 0.96626 1.69691 1.38276 1.01319 1.47124 0.84879 0.76936 0.78335 0.78245 1.19533 1.19655 1.19773 1.45775 1.65971 1.14406 1.08742 1.20984 0.76629 0.86885 0.85710 1.90677 1.52756 1.17639 1.85977 1.21596 1.03929 0.99732 0.91274 1.19623 1.02526 0.95727 0.88031 1.21303 0.84937 1.06907 1.00712 1.22377 1.00584 1.02179 0.93672 1.70268 1.01792 1.25551 1.27873 1.25658 0.98598 0.95996 0.89561 1.43432 1.09516 1.41371 1.22400 0.72964 0.90421 0.93580 0.90329 0.87342 0.91886 0.94984 0.93015 0.89676 0.91745 0.89179 0.77391 0.91398 0.75194 0.89056 0.86080 0.88731 0.91916 0.80337 0.74352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.49 71.98 0.68 -1.78 16 2 C 0.14 3.06 2.52 45.00 0.11 3.17 16 3 H 0.06 1.58 6.22 -2.39 -0.01 1.57 16 4 C 0.05 0.94 4.53 86.31 0.39 1.33 16 5 N -0.53 -14.93 4.17 -927.02 -3.87 -18.80 16 6 C 0.03 0.79 9.19 127.69 1.17 1.96 16 7 C 0.06 1.96 5.30 85.56 0.45 2.42 16 8 C 0.44 20.84 7.42 87.66 0.65 21.49 16 9 O -0.61 -32.17 13.96 -3.07 -0.04 -32.22 16 10 N -0.58 -29.79 5.29 -306.98 -1.62 -31.41 16 11 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 15 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 19 N -0.70 -15.32 4.79 -442.52 -2.12 -17.44 16 20 C 0.51 13.18 7.80 87.65 0.68 13.86 16 21 O -0.59 -19.89 15.64 -3.04 -0.05 -19.94 16 22 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 23 C -0.02 -0.42 5.06 29.85 0.15 -0.27 16 24 C -0.02 -0.46 6.49 40.95 0.27 -0.19 16 25 C -0.04 -0.90 11.79 83.52 0.98 0.08 16 26 N -0.54 -12.96 11.25 -200.31 -2.25 -15.21 16 27 C 0.19 3.37 13.04 180.26 2.35 5.73 16 28 N -0.56 -10.11 6.15 -186.50 -1.15 -11.26 16 29 H 0.43 6.02 8.96 -92.71 -0.83 5.19 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.52 7.99 -2.39 -0.02 1.50 16 34 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 35 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 36 H 0.05 1.91 5.79 -2.39 -0.01 1.90 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 39 H 0.09 3.08 6.50 -2.39 -0.02 3.06 16 40 H 0.39 19.66 7.90 -92.71 -0.73 18.93 16 41 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.41 7.53 8.61 -92.71 -0.80 6.73 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 46 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 48 H 0.24 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -77.17 401.58 -0.80 -77.97 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -1.36 Total: 46.18 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 9.35 Total: 27.39 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -10.73 Total: -144.08 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.09 Total: -52.15 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.17 -0.80 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483346420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.550 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds