Wall clock time and date at job start Tue Mar 31 2020 19:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46905 * 2 1 4 4 C 1.52996 * 109.47032 * 120.00089 * 2 1 3 5 5 N 1.46895 * 109.47289 * 175.16368 * 4 2 1 6 6 C 1.46901 * 111.00316 * 198.92841 * 5 4 2 7 7 C 1.46897 * 111.00055 * 74.97111 * 5 4 2 8 8 C 1.50706 * 109.47242 * 190.00093 * 7 5 4 9 9 O 1.21298 * 119.99940 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00411 * 180.02562 * 8 7 5 11 11 C 1.37092 * 120.00126 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00381 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99793 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00098 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99650 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47258 * 90.00080 * 15 13 11 17 17 H 1.48499 * 109.46891 * 210.00146 * 15 13 11 18 18 H 1.48501 * 109.47217 * 329.99838 * 15 13 11 19 19 N 1.46502 * 109.46705 * 239.99725 * 2 1 3 20 20 C 1.34783 * 119.99843 * 82.99608 * 19 2 1 21 21 O 1.21280 * 119.99596 * 359.97438 * 20 19 2 22 22 C 1.50692 * 119.99914 * 179.97438 * 20 19 2 23 23 C 1.52999 * 109.47208 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.47186 * 179.97438 * 23 22 20 25 25 C 1.34666 * 126.59048 * 274.95567 * 24 23 22 26 26 N 1.34135 * 108.01736 * 180.02562 * 25 24 23 27 27 C 1.30499 * 109.25782 * 0.02562 * 26 25 24 28 28 N 1.35045 * 108.69928 * 359.97438 * 27 26 25 29 29 H 0.97003 * 126.39839 * 179.73488 * 28 27 26 30 30 H 1.08992 * 109.47418 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47274 * 300.00409 * 1 2 3 32 32 H 1.09001 * 109.47098 * 59.99856 * 1 2 3 33 33 H 1.09004 * 109.47302 * 295.16780 * 4 2 1 34 34 H 1.09002 * 109.47424 * 55.16287 * 4 2 1 35 35 H 1.09002 * 109.47239 * 54.11566 * 6 5 4 36 36 H 1.08993 * 109.47521 * 174.11766 * 6 5 4 37 37 H 1.09000 * 109.47210 * 294.12301 * 6 5 4 38 38 H 1.08995 * 109.47283 * 310.00172 * 7 5 4 39 39 H 1.09001 * 109.47009 * 70.00763 * 7 5 4 40 40 H 0.97007 * 119.99423 * 359.97438 * 10 8 7 41 41 H 0.96994 * 119.99873 * 180.02562 * 14 13 11 42 42 H 0.96992 * 119.99994 * 262.98892 * 19 2 1 43 43 H 1.09002 * 109.47311 * 59.99700 * 22 20 19 44 44 H 1.08996 * 109.47316 * 299.99950 * 22 20 19 45 45 H 1.09009 * 109.46978 * 60.00460 * 23 22 20 46 46 H 1.08996 * 109.47140 * 300.00301 * 23 22 20 47 47 H 1.07993 * 125.99407 * 0.08181 * 25 24 23 48 48 H 1.07998 * 125.64906 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5043 -0.8232 1.1923 6 6 3.9952 -1.8667 2.1023 7 6 4.1340 0.4709 1.4867 8 6 5.6078 0.3934 1.1817 9 8 6.0865 -0.6383 0.7601 10 7 6.3941 1.4704 1.3775 11 6 7.7347 1.4000 1.0995 12 1 8.1608 0.4814 0.7241 13 6 8.5452 2.5106 1.3008 14 7 8.0267 3.6282 1.7582 15 14 10.3717 2.4149 0.9214 16 1 10.6053 2.8101 -0.4908 17 1 11.1131 3.3340 1.8218 18 1 10.8488 1.0244 1.1317 19 7 2.0183 -0.6907 -1.1962 20 6 2.1087 -0.0288 -2.3668 21 8 1.7853 1.1384 -2.4299 22 6 2.6114 -0.7391 -3.5971 23 6 2.6148 0.2308 -4.7804 24 6 3.1182 -0.4793 -6.0106 25 6 4.4048 -0.6429 -6.3730 26 7 4.4270 -1.3264 -7.5270 27 6 3.2031 -1.5921 -7.8935 28 7 2.3554 -1.0812 -6.9747 29 1 1.3868 -1.1282 -6.9962 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7491 -0.1599 2.1371 34 1 1.6076 -1.7209 1.2936 35 1 3.4878 -2.8066 1.8848 36 1 5.0690 -1.9932 1.9646 37 1 3.7929 -1.5748 3.1328 38 1 3.6761 1.2459 0.8723 39 1 3.9933 0.7120 2.5404 40 1 6.0112 2.2955 1.7144 41 1 8.5924 4.4035 1.8983 42 1 2.2766 -1.6242 -1.1457 43 1 1.9591 -1.5831 -3.8214 44 1 3.6245 -1.1000 -3.4198 45 1 3.2670 1.0751 -4.5563 46 1 1.6016 0.5914 -4.9575 47 1 5.2675 -0.2870 -5.8295 48 1 2.9157 -2.1312 -8.7841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483346429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:48 Heat of formation + Delta-G solvation = -43.278444 kcal Electronic energy + Delta-G solvation = -29177.322383 eV Core-core repulsion = 25073.973228 eV Total energy + Delta-G solvation = -4103.349156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95272 -40.90618 -40.24759 -38.29698 -36.13217 -35.52699 -34.88971 -33.26983 -33.26233 -32.07715 -29.63664 -29.50792 -27.94878 -26.60032 -25.62362 -23.68427 -22.47353 -22.09017 -21.61874 -21.23466 -20.83191 -19.84222 -18.88443 -18.06884 -17.65847 -17.25347 -16.71567 -16.59940 -16.42712 -16.03631 -15.80794 -15.45506 -15.31887 -15.24238 -15.04544 -14.82019 -14.40638 -14.25823 -14.10157 -13.78623 -13.61525 -13.41228 -13.26743 -13.13335 -13.03534 -12.88942 -12.79533 -12.61868 -12.45118 -12.36605 -12.16939 -12.12352 -11.68886 -11.43471 -10.98030 -10.93681 -10.80191 -10.25804 -9.99608 -9.91069 -9.33518 -9.19105 -8.46009 -5.94457 1.08499 1.37632 1.41023 1.53576 1.75664 2.06526 2.17042 2.24033 2.28371 2.44617 2.80846 3.21011 3.38550 3.70169 3.84246 3.93841 4.00246 4.07988 4.14987 4.21864 4.33061 4.35587 4.44741 4.51120 4.52326 4.59584 4.61358 4.67050 4.69336 4.73098 4.80403 4.82502 4.86129 5.08644 5.10855 5.25048 5.31981 5.34211 5.41370 5.65439 5.76502 5.88900 6.07557 6.23046 6.60524 6.60928 6.70831 7.13800 7.14305 7.39798 7.57392 8.12858 8.71698 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.003217 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.359314 B = 8702.684501 C =11412.738035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.054 0.946 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.028 3.972 7 C 0.058 3.942 8 C 0.444 3.556 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.329 4.329 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.923 5.923 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.270 1.270 19 N -0.699 5.699 20 C 0.510 3.490 21 O -0.589 6.589 22 C -0.126 4.126 23 C -0.019 4.019 24 C -0.013 4.013 25 C -0.054 4.054 26 N -0.542 5.542 27 C 0.192 3.808 28 N -0.554 5.554 29 H 0.436 0.564 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.412 0.588 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.158 0.842 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -10.858 -8.589 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.072 0.928 4 C -0.079 4.079 5 N -0.253 5.253 6 C -0.120 4.120 7 C -0.073 4.073 8 C 0.231 3.769 9 O -0.494 6.494 10 N -0.215 5.215 11 C -0.459 4.459 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.564 5.564 15 Si 0.815 3.185 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.349 5.349 20 C 0.298 3.702 21 O -0.470 6.470 22 C -0.166 4.166 23 C -0.058 4.058 24 C -0.129 4.129 25 C -0.201 4.201 26 N -0.261 5.261 27 C -0.092 4.092 28 N -0.159 5.159 29 H 0.278 0.722 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.248 0.752 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.175 0.825 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -19.807 -10.918 -9.728 24.620 hybrid contribution -0.011 0.909 1.343 1.622 sum -19.817 -10.009 -8.385 23.732 Atomic orbital electron populations 1.22035 0.93130 1.03228 1.02453 1.20970 0.94659 0.96152 0.84404 0.92793 1.22568 0.86282 1.02772 0.96298 1.61479 1.05629 1.04400 1.53772 1.22443 1.01813 0.94803 0.92945 1.21729 0.91355 0.93666 1.00575 1.20722 0.89321 0.83937 0.82928 1.90451 1.76573 1.31351 1.51076 1.41967 1.08052 1.12889 1.58604 1.19645 0.84452 0.99202 1.42592 0.90198 1.26038 1.04585 0.94244 0.96542 1.69678 1.38352 1.02680 1.45711 0.84950 0.76920 0.78298 0.78335 1.19865 1.19546 1.19514 1.45787 1.65519 1.15564 1.08036 1.20976 0.76771 0.86711 0.85764 1.90675 1.51801 1.18228 1.86307 1.21591 1.04092 0.99657 0.91222 1.19608 1.02523 0.96078 0.87616 1.21146 0.91786 1.04802 0.95211 1.22251 0.96472 1.05084 0.96311 1.70247 1.23759 1.18071 1.14067 1.25740 0.84244 1.01688 0.97548 1.43223 1.11157 1.42821 1.18690 0.72245 0.90433 0.90360 0.93598 0.91804 0.87298 0.89218 0.92826 0.95500 0.89094 0.91604 0.77353 0.91396 0.75209 0.86344 0.88769 0.90834 0.89604 0.82467 0.73631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.46 71.98 0.68 -1.73 16 2 C 0.14 3.08 2.55 44.99 0.11 3.19 16 3 H 0.05 1.53 6.41 -2.39 -0.02 1.51 16 4 C 0.05 0.93 4.54 86.30 0.39 1.32 16 5 N -0.53 -15.13 4.16 -927.07 -3.86 -18.99 16 6 C 0.03 0.77 9.17 127.69 1.17 1.94 16 7 C 0.06 2.02 5.28 85.56 0.45 2.48 16 8 C 0.44 21.23 7.52 87.66 0.66 21.89 16 9 O -0.61 -32.93 13.88 -3.08 -0.04 -32.97 16 10 N -0.58 -30.41 5.29 -306.98 -1.62 -32.03 16 11 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 14 N -0.92 -51.26 13.05 21.67 0.28 -50.98 16 15 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 N -0.70 -15.26 4.83 -442.53 -2.14 -17.39 16 20 C 0.51 13.03 7.77 87.65 0.68 13.71 16 21 O -0.59 -19.64 15.66 -3.03 -0.05 -19.69 16 22 C -0.13 -2.44 5.68 29.85 0.17 -2.27 16 23 C -0.02 -0.39 5.06 29.85 0.15 -0.24 16 24 C -0.01 -0.26 6.49 40.95 0.27 0.00 16 25 C -0.05 -1.42 11.79 83.52 0.98 -0.44 16 26 N -0.54 -14.02 11.25 -200.31 -2.25 -16.27 16 27 C 0.19 3.05 13.04 180.26 2.35 5.41 16 28 N -0.55 -7.48 6.15 -186.49 -1.15 -8.63 16 29 H 0.44 2.51 8.96 -92.71 -0.83 1.68 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.06 1.09 8.01 -2.38 -0.02 1.07 16 34 H 0.11 1.50 7.81 -2.39 -0.02 1.48 16 35 H 0.09 1.91 7.94 -2.39 -0.02 1.89 16 36 H 0.05 2.01 5.92 -2.39 -0.01 1.99 16 37 H 0.03 0.68 8.13 -2.39 -0.02 0.66 16 38 H 0.09 3.12 6.66 -2.39 -0.02 3.11 16 39 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 40 H 0.39 19.99 7.90 -92.70 -0.73 19.26 16 41 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.41 7.53 8.58 -92.71 -0.80 6.74 16 43 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 1.88 8.10 -2.38 -0.02 1.86 16 46 H 0.09 1.58 8.10 -2.39 -0.02 1.57 16 47 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 48 H 0.25 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -81.03 401.59 -0.80 -81.83 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -1.35 Total: 42.36 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 9.35 Total: 26.69 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -10.73 Total: -144.29 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.09 Total: -52.66 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.03 -0.80 -81.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483346429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.553 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds