Wall clock time and date at job start Tue Mar 31 2020 19:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46903 * 2 1 4 4 C 1.53002 * 109.46977 * 119.99412 * 2 1 3 5 5 N 1.46500 * 109.46618 * 175.00195 * 4 2 1 6 6 C 1.46503 * 120.00132 * 270.00133 * 5 4 2 7 7 C 1.36939 * 120.00190 * 90.00430 * 5 4 2 8 8 H 1.08004 * 119.99754 * 340.44548 * 7 5 4 9 9 C 1.38805 * 120.00251 * 160.16277 * 7 5 4 10 10 N 1.31617 * 120.00050 * 344.50867 * 9 7 5 11 11 Si 1.86801 * 120.00021 * 164.49887 * 9 7 5 12 12 H 1.48502 * 109.46962 * 90.00562 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00421 * 11 9 7 14 14 H 1.48503 * 109.47416 * 330.00554 * 11 9 7 15 15 N 1.46487 * 109.47262 * 240.00116 * 2 1 3 16 16 C 1.34778 * 120.00479 * 84.99674 * 15 2 1 17 17 O 1.21283 * 119.99801 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00079 * 180.02562 * 16 15 2 19 19 N 1.46496 * 109.46758 * 180.02562 * 18 16 15 20 20 N 1.40318 * 126.32408 * 269.68725 * 19 18 16 21 21 C 1.28868 * 108.11961 * 180.08459 * 20 19 18 22 22 N 1.38014 * 108.81813 * 1.12350 * 21 20 19 23 23 C 1.34304 * 108.33044 * 358.31534 * 22 21 20 24 24 O 1.21810 * 126.32519 * 181.52830 * 23 22 21 25 25 C 1.46718 * 124.16747 * 177.45674 * 22 21 20 26 26 C 1.53289 * 108.64876 * 19.60134 * 25 22 21 27 27 C 1.53224 * 109.37359 * 308.15014 * 26 25 22 28 28 C 1.51110 * 127.47278 * 181.73933 * 21 20 19 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47401 * 300.00238 * 1 2 3 31 31 H 1.08995 * 109.47378 * 60.00126 * 1 2 3 32 32 H 1.09001 * 109.46919 * 55.00925 * 4 2 1 33 33 H 1.08991 * 109.47393 * 295.00038 * 4 2 1 34 34 H 1.09001 * 109.47084 * 264.86777 * 6 5 4 35 35 H 1.08995 * 109.46838 * 24.86829 * 6 5 4 36 36 H 1.08999 * 109.46901 * 144.87342 * 6 5 4 37 37 H 0.97007 * 119.99828 * 179.97438 * 10 9 7 38 38 H 0.97004 * 119.99999 * 264.99984 * 15 2 1 39 39 H 1.08998 * 109.46586 * 299.99512 * 18 16 15 40 40 H 1.08994 * 109.47188 * 60.00073 * 18 16 15 41 41 H 1.08996 * 109.61131 * 139.35348 * 25 22 21 42 42 H 1.09003 * 109.60862 * 259.69297 * 25 22 21 43 43 H 1.09005 * 109.48829 * 68.12008 * 26 25 22 44 44 H 1.09004 * 109.48676 * 188.17190 * 26 25 22 45 45 H 1.08998 * 109.54407 * 190.53624 * 27 26 25 46 46 H 1.09006 * 109.54179 * 310.80191 * 27 26 25 47 47 H 1.09003 * 109.75401 * 78.00121 * 28 21 20 48 48 H 1.09009 * 109.78800 * 317.29543 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.2798 0.1651 1.7240 8 1 3.8624 1.1459 1.8978 9 6 5.6051 -0.0923 2.0468 10 7 6.0321 -1.3343 2.1333 11 14 6.7826 1.3240 2.3581 12 1 6.7598 1.6789 3.7999 13 1 8.1576 0.9191 1.9698 14 1 6.3667 2.4999 1.5521 15 7 2.0183 -0.6905 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6489 -0.7289 -3.5877 19 7 2.6988 0.2126 -4.7089 20 7 1.6672 0.4701 -5.6247 21 6 2.0870 1.3541 -6.4631 22 7 3.3904 1.6819 -6.1492 23 6 3.7486 0.9891 -5.0558 24 8 4.8217 1.0495 -4.4828 25 6 4.2133 2.6191 -6.9219 26 6 3.2882 3.5007 -7.7685 27 6 2.3308 2.6115 -8.5688 28 6 1.3189 1.9735 -7.6076 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 4.3655 -2.7320 1.3247 35 1 3.4375 -2.4268 -0.1632 36 1 5.0403 -1.6837 0.0543 37 1 6.9583 -1.5142 2.3585 38 1 2.2490 -1.6317 -1.1525 39 1 3.6480 -1.1213 -3.3985 40 1 1.9760 -1.5507 -3.8325 41 1 4.7925 3.2438 -6.2420 42 1 4.8883 2.0628 -7.5724 43 1 2.7138 4.1576 -7.1152 44 1 3.8857 4.1015 -8.4542 45 1 1.8025 3.2157 -9.3062 46 1 2.8968 1.8291 -9.0745 47 1 0.6414 2.7373 -7.2259 48 1 0.7498 1.2040 -8.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483402394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:37 Heat of formation + Delta-G solvation = 34.824389 kcal Electronic energy + Delta-G solvation = -30325.868754 eV Core-core repulsion = 26225.906392 eV Total energy + Delta-G solvation = -4099.962363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56515 -39.39507 -37.74162 -36.87077 -36.33746 -34.05849 -33.59596 -32.63962 -31.32493 -30.32812 -29.05289 -27.74718 -26.17738 -25.58826 -24.65086 -22.87514 -22.29913 -21.52268 -20.37333 -20.00704 -19.95509 -17.39017 -17.35288 -16.78355 -16.42740 -16.06973 -15.82075 -15.26351 -14.99895 -14.71864 -14.67818 -14.55247 -14.49979 -13.68606 -13.64209 -13.57086 -13.23906 -13.03269 -12.86634 -12.44338 -12.20739 -12.02511 -11.99123 -11.80994 -11.54213 -11.43009 -11.41772 -11.36426 -11.28663 -10.77561 -10.61667 -10.58844 -10.31172 -10.16091 -10.12806 -9.96681 -9.80601 -9.40587 -8.63744 -8.44259 -8.39929 -6.74082 -5.68961 -3.11549 1.67169 1.90585 2.77053 2.88923 3.01645 3.43885 3.51006 3.56391 3.66445 4.01723 4.17676 4.26334 4.38208 4.56285 4.71991 4.88831 4.95174 5.01780 5.10775 5.18336 5.26632 5.30096 5.34108 5.35579 5.41190 5.50410 5.56837 5.65390 5.69565 5.80452 5.87160 5.96832 6.10218 6.12736 6.20157 6.46111 6.50513 6.54404 6.61927 6.81725 7.07840 7.36165 7.65146 7.69487 7.85610 7.94667 8.14882 8.41116 8.64506 9.26830 9.90203 10.36093 11.36306 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003169 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.238087 B = 8834.252371 C =10051.446492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 H 0.083 0.917 4 C 0.144 3.856 5 N -0.599 5.599 6 C 0.167 3.833 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.909 5.909 11 Si 0.901 3.099 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.700 5.700 16 C 0.498 3.502 17 O -0.537 6.537 18 C 0.142 3.858 19 N -0.436 5.436 20 N -0.269 5.269 21 C 0.272 3.728 22 N -0.557 5.557 23 C 0.655 3.345 24 O -0.545 6.545 25 C 0.131 3.869 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.030 0.970 35 H -0.008 1.008 36 H 0.044 0.956 37 H 0.252 0.748 38 H 0.397 0.603 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 3.038 -23.184 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.101 0.899 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.554 5.554 11 Si 0.731 3.269 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 N -0.352 5.352 16 C 0.281 3.719 17 O -0.414 6.414 18 C 0.017 3.983 19 N -0.255 5.255 20 N -0.091 5.091 21 C -0.007 4.007 22 N -0.287 5.287 23 C 0.355 3.645 24 O -0.417 6.417 25 C 0.009 3.991 26 C -0.175 4.175 27 C -0.162 4.162 28 C -0.078 4.078 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.010 0.990 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.233 0.767 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.120 0.880 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.236 3.202 -22.376 25.243 hybrid contribution 1.531 0.690 0.220 1.693 sum -9.706 3.892 -22.156 24.500 Atomic orbital electron populations 1.22113 0.96484 1.01284 1.01727 1.21932 0.92093 0.98936 0.85984 0.89923 1.21043 0.85855 0.97538 0.94050 1.43843 0.99079 1.22793 1.66373 1.20829 0.94199 0.88948 0.93773 1.19149 0.92756 0.90479 1.35711 0.91467 1.24893 0.98429 0.96102 1.00154 1.70074 1.15687 1.17020 1.52621 0.86307 0.80687 0.82133 0.77780 1.21494 1.21562 1.20552 1.45937 1.66233 1.13928 1.09099 1.20700 0.78389 0.87858 0.84924 1.90680 1.50027 1.15729 1.84932 1.21255 1.05389 0.89760 0.81916 1.48240 1.10610 1.40045 1.26633 1.76665 1.12904 1.17612 1.01891 1.24189 0.84339 0.94452 0.97671 1.46016 1.13314 1.41986 1.27366 1.16476 0.85199 0.81329 0.81505 1.91132 1.22662 1.69689 1.58266 1.21763 0.92712 0.90426 0.94181 1.21982 0.98388 0.98035 0.99093 1.21713 0.97182 0.99679 0.97597 1.20464 0.96567 1.00471 0.90282 0.92969 0.91969 0.92996 0.94026 0.91902 0.95139 0.98989 0.93763 0.93831 0.76672 0.85804 0.86153 0.89021 0.90093 0.90354 0.88953 0.89505 0.90730 0.88025 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.18 2.88 -67.94 -0.20 1.98 16 3 H 0.08 1.84 7.58 -51.92 -0.39 1.45 16 4 C 0.14 2.85 5.29 -4.04 -0.02 2.83 16 5 N -0.60 -14.87 2.78 -181.12 -0.50 -15.37 16 6 C 0.17 3.98 8.52 59.85 0.51 4.49 16 7 C -0.25 -7.12 9.67 -15.06 -0.15 -7.26 16 8 H 0.07 1.90 7.88 -52.48 -0.41 1.49 16 9 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 10 N -0.91 -26.98 10.67 55.49 0.59 -26.39 16 11 Si 0.90 23.16 29.58 -169.99 -5.03 18.13 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 15 N -0.70 -12.13 4.52 -53.81 -0.24 -12.38 16 16 C 0.50 9.26 7.86 -10.98 -0.09 9.18 16 17 O -0.54 -12.20 16.09 5.55 0.09 -12.11 16 18 C 0.14 2.15 6.87 -5.19 -0.04 2.12 16 19 N -0.44 -7.29 3.12 -66.41 -0.21 -7.50 16 20 N -0.27 -3.90 12.51 33.12 0.41 -3.49 16 21 C 0.27 3.18 7.73 -153.76 -1.19 1.99 16 22 N -0.56 -7.46 3.13 -117.56 -0.37 -7.83 16 23 C 0.66 11.90 8.64 -87.05 -0.75 11.14 16 24 O -0.55 -12.01 17.82 5.09 0.09 -11.92 16 25 C 0.13 1.19 6.88 -3.77 -0.03 1.17 16 26 C -0.14 -0.73 5.94 -26.47 -0.16 -0.88 16 27 C -0.12 -0.50 5.96 -26.38 -0.16 -0.66 16 28 C -0.04 -0.23 6.32 -27.44 -0.17 -0.40 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 34 H 0.03 0.79 7.41 -51.93 -0.38 0.40 16 35 H -0.01 -0.16 5.76 -51.93 -0.30 -0.46 16 36 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.40 6.08 6.20 -40.82 -0.25 5.83 16 39 H 0.12 1.81 8.12 -51.93 -0.42 1.39 16 40 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.46 8.14 -51.92 -0.42 0.03 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -39.68 390.84 -9.02 -48.70 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.58 Total: 0.60 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: -2.16 Total: 23.66 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.32 Total: -72.95 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.18 Total: -24.03 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.68 -9.02 -48.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483402394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.525 kcal (2) G-P(sol) polarization free energy of solvation -39.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds